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Aliases for CTC-338M12.4 Gene

Subcategory (RNA class) for CTC-338M12.4 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for CTC-338M12.4 Gene

  • Uncharacterized LOC101928649 3

External Ids for CTC-338M12.4 Gene

Previous GeneCards Identifiers for CTC-338M12.4 Gene

  • GC05U901998

Summaries for CTC-338M12.4 Gene

GeneCards Summary for CTC-338M12.4 Gene

CTC-338M12.4 (Uncharacterized LOC101928649) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTC-338M12.4 Gene

Genomics for CTC-338M12.4 Gene

Regulatory Elements for CTC-338M12.4 Gene


Promoters for CTC-338M12.4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000191740 477 2001 CREB3L1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 FOS

Genomic Location for CTC-338M12.4 Gene

Chromosome:
5
Start:
181,246,541 bp from pter
End:
181,257,586 bp from pter
Size:
11,046 bases
Orientation:
Plus strand

Genomic View for CTC-338M12.4 Gene

Genes around CTC-338M12.4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTC-338M12.4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTC-338M12.4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTC-338M12.4 Gene

Proteins for CTC-338M12.4 Gene

Post-translational modifications for CTC-338M12.4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTC-338M12.4 Gene

Domains & Families for CTC-338M12.4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTC-338M12.4 Gene

Function for CTC-338M12.4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTC-338M12.4 Gene

Localization for CTC-338M12.4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTC-338M12.4 Gene

Pathways & Interactions for CTC-338M12.4 Gene

SuperPathways for CTC-338M12.4 Gene

No Data Available

Interacting Proteins for CTC-338M12.4 Gene

Gene Ontology (GO) - Biological Process for CTC-338M12.4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTC-338M12.4 Gene

Drugs & Compounds for CTC-338M12.4 Gene

No Compound Related Data Available

Transcripts for CTC-338M12.4 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CTC-338M12.4 Gene

No ASD Table

Relevant External Links for CTC-338M12.4 Gene

GeneLoc Exon Structure for
CTC-338M12.4

No data available for mRNA/cDNA for CTC-338M12.4 Gene

Expression for CTC-338M12.4 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTC-338M12.4 Gene

Orthologs for CTC-338M12.4 Gene

No data available for Orthologs and Evolution for CTC-338M12.4 Gene

Paralogs for CTC-338M12.4 Gene

No data available for Paralogs for CTC-338M12.4 Gene

Variants for CTC-338M12.4 Gene

Sequence variations from dbSNP and Humsavar for CTC-338M12.4 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000001198 -- 181,248,435(+) TGGCC(A/G)GCCTC intron-variant
rs1000040355 -- 181,251,469(+) CAAAC(-/AAAA)AAACC intron-variant
rs1000159879 -- 181,246,376(+) ACAGG(C/G)AGTCC upstream-variant-2KB
rs1000258615 -- 181,250,261(+) CCGGG(C/T)GCGGT intron-variant
rs1000279735 -- 181,251,216(+) TTGAA(C/G)CTGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CTC-338M12.4 Gene

Variant ID Type Subtype PubMed ID
dgv1155e214 CNV gain 21293372
dgv1156e214 CNV loss 21293372
dgv3244n106 CNV deletion 24896259
esv2671569 CNV deletion 23128226
esv3567123 CNV deletion 23714750
esv3570633 CNV loss 25503493
esv3570634 CNV loss 25503493
esv3607830 CNV loss 21293372
esv3607831 CNV loss 21293372
nsv1019099 CNV loss 25217958
nsv1028730 CNV gain 25217958
nsv428133 CNV gain 18775914
nsv462591 CNV loss 19166990
nsv513286 CNV loss 21212237
nsv517697 CNV loss 19592680
nsv600731 CNV loss 21841781
nsv830567 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for CTC-338M12.4 Gene

Disorders for CTC-338M12.4 Gene

Relevant External Links for CTC-338M12.4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTC-338M12.4

No disorders were found for CTC-338M12.4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTC-338M12.4 Gene

Publications for CTC-338M12.4 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for CTC-338M12.4 Gene

Sources for CTC-338M12.4 Gene

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