CTBS Gene
protein-coding GIFtS : 52
GCID: GC01 M085018
chitobiase, di-N-acetyl- (Previous symbol: CTB )
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Aliasesfor CTBS gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Chitobiase, Di-N-Acetyl- 1 2 CTB1 2 3 5 Di-N-Acetylchitobiase1 EC 3.2.1.-3
Export aliases for CTBS gene to outside databases Previous GC identifers: GC01P085516 GC01M084156 GC01M084307 GC01M084442 GC01M084732 GC01M083128
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Summariesfor CTBS gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CTBS : Chitobiase is a lysosomal glycosidase involved in degradation of asparagine-linked oligosaccharides on glycoproteins (Aronson and Kuranda, 1989 (PubMed 2531691)).(supplied by OMIM, Nov 2010) UniProtKB/Swiss-Prot: DIAC_HUMAN, Q01459 Function : Involved in the degradation of asparagine-linked glycoproteins. Hydrolyze of N-acetyl-beta-D-glucosamine(1-4)N-acetylglucosamine chitobiose core from the reducing end of the bond, it requires prior cleavage by glycosylasparaginase Gene Wiki entry for CTBS
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Genomic Viewsfor CTBS gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_032977.9 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CTBS gene promoter: ER-alpha LHX3b/Lhx3b p300 AP-4 LUN-1 Evi-1 PPAR-alpha LHX3a/Lhx3a NF-kappaB1 RSRFC4 Other transcription factors Search SABiosciences Chromatin IP Primers for CTBS Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CTBS
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p22 Ensembl cytogenetic band: 1p22.3 HGNC cytogenetic band: 1p22 CTBS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M085018: view genomic region
(about GC identifiers )
Start:
85,018,804 bp from pter
End:
85,040,163 bp from pter
Size:
21,360 bases
Orientation:
minus strand
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Proteinsfor CTBS gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: DIAC_HUMAN, Q01459 (See
protein sequence )Recommended Name: Di-N-acetylchitobiase precursor Size : 385 amino acids; 43760 Da
Subcellular location : Lysosome
Secondary accessions : Q5VX50Explore the universe of human proteins at neXtProt for CTBS: NX_Q01459 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q01459 CTBS Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_004379.1 ENSEMBL proteins: ENSP00000359664 ENSP00000452177 ENSP00000359659 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005764 lysosome
IEA --
CTBS for ontologies About GeneDecksing CTBS Antibody Products: Assay Products for CTBS:
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Protein
Domains / Familiesfor CTBS gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CTBS for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q01459 ProtoNet protein and cluster: Q01459
1 Blocks protein family : IPB001579 Glycoside hydrolase UniProtKB/Swiss-Prot: DIAC_HUMAN, Q01459 Similarity : Belongs to the glycosyl hydrolase 18 family
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Functionfor CTBS gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: DIAC_HUMAN, Q01459 Function : Involved in the degradation of asparagine-linked glycoproteins. Hydrolyze of N-acetyl-beta-D-glucosamine(1-4)N-acetylglucosamine chitobiose core from the reducing end of the bond, it requires prior cleavage by glycosylasparaginase
Genatlas biochemistry entry for CTBS : lysosomal chitobiase,involved in degradation of asparagine-linked glycoproteins Enzyme Number (IUBMB): EC 3.2.1.- 1 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CTBS (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CTBSOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CTBS (NM_004388 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CTBS Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CTBS
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CTBS
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0004568 chitinase activity
IEA -- GO:0043169 cation binding
IEA --
CTBS for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for CTBS :Animal Models: Mouse knock-out Ctbs tm1Tbec for CTBS 7 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ctbs) :
CTBS for phenotypes About GeneDecksing
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Pathways & Interactionsfor CTBS gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CTBS STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for CTBS (Q01459 3 ENSP00000359664 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006032 chitin catabolic process
IEA -- GO:0009313 oligosaccharide catabolic process
IEA --
CTBS for ontologies About GeneDecksing
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Drugs & Compoundsfor CTBS gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CTBS 2 HMDB Compounds for CTBS About this table Search CenterWatch for drugs/clinical trials and news about CTBS / DIAC
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Transcriptsfor CTBS gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CTBS gene: NM_004388.2 Unigene Cluster for CTBS:
Chitobiase, di-N-acetyl- Hs.513557 [show with all ESTs ] Unigene Representative Sequence: NM_004388 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000477677 (uc001dkb.2 ) ENST00000370630 (uc001dkc.3 uc001dka.2 )ENST00000465118 ENST00000370625 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CTBS (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CTBSOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CTBS (NM_004388 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CTBS Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CTBS
Additional cDNA sequence: AK075423.1 AK298703.1 AK314640.1 BC024007.2 BC065191.1 BC096752.1 BC126333.1 BC126335.1 M95767.1
8 DOTS entries : DT.95172057 DT.410826
DT.95297552 DT.92443352 DT.121427673 DT.100782215 DT.121427721 DT.97795709 24/423 AceView cDNA sequences (see all 423 ):
BF589956 AI360028 AI803051 BG008942 AI346848 CB133657 AI927528 AI911433 F36740 BF109470 CK818850 CB121330 AI922298 AI626058 BX956979 BQ232618 CR590327 BM784623 AW340694 BM922137 CD108724 CB241216 BT006823 H15938 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for CTBS About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c SP1 :   -                   SP2 :                     SP3 :   -     -               SP4 :       -              
ECgene alternative splicing isoforms for CTBS
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Expression for CTBS gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CTBS expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GAAAGTGGAG
About this image CTBS expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See CTBS Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CTBS SOURCE GeneReport for Unigene cluster: Hs.513557 SABiosciences Custom PCR Arrays for CTBS Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CTBSBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CTBS QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CTBS QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CTBS In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CTBS
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Orthologsfor CTBS gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for CTBS gene from 5/19 species (see all 19 ) About this table
ENSEMBL Gene Tree for CTBS (if available)TreeFam Gene Tree for CTBS (if available)
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Paralogsfor CTBS gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor CTBS gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CTBS (85018804 - 85040163 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CTBS: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CTBS
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Disorders
/ Diseasesfor CTBS gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CTBS for disorders About GeneDecksing
OMIM gene information: 600873
OMIM disorders : --3 diseases for CTBS : About MalaCards pre-eclampsia spontaneous abortion eclampsia Export disorders for CTBS gene to outside databases
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Publicationsfor CTBS gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CTBS gene, integrated from 9 sources (see all 14 ): (articles sorted by number of sources associating them with CTBS) Utopia : connect your pdf to the dynamic world of online information
Lysosomal chitobiase (CTB) and the G-protein gamma 5 subunit (GNG5) genes co-localize to human chromosome 1p22. (PubMed id 7606925) 1 , 3, 9 Ahmad W....Aronson N.N. (1995) Structure of the human gene for lysosomal di-N-acetylchitobiase. (PubMed id 10336991) 1 , 2 Liu B.... Aronson N.N. Jr. (1999) Characterization of the cDNA and genomic sequence of a G protein gamma subunit (gamma 5). (PubMed id 1549114) 1 , 3 Fisher K.J. and Aronson N.N. (1992) Cloning and expression of the cDNA sequence encoding the lysosomal glycosidase di-N-acetylchitobiase. (PubMed id 1527079) 1 , 2 Fisher K.J. and Aronson N.N. Jr. (1992) Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. (PubMed id 19159218) 2 Chen R.... Zou H. (2009) Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201) 1 Abdelmohsen K....Gorospe M. (2009) Optimum substrate size and specific anomer requirements for the reducing-end glycoside hydrolase di-N-acetylchitobiase. (PubMed id 16794344) 1 Aronson N.N. and Halloran B.A. (2006) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 2 Gregory S.G.... Bentley D.R. (2006) A novel dynamin-associating molecule, formin-binding protein 17, induces tubular membrane invaginations and participates in endocytosis. (PubMed id 15252009) 1 Kamioka Y....Mochizuki N. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004)
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External Searches for CTBS gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CTBS gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CTBS gene
(According to HUGE )
About This Section --
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Specialized Databases showing CTBS gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CTBS Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for CTBS gene: Search GeneIP for patents involving CTBS GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CTBS gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for CTBS OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CTBS OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CTBS OriGene Protein Over-expression Lysate for CTBS Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CTBS OriGene 3'-UTR Clone for CTBS OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CTBS OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CTBS Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for CTBS OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CTBS OriGene Custom Protein Services for CTBS OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CTBS QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CTBS QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CTBS QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CTBS QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CTBS QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CTBS
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CTBS Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CTBS
Search ThermoFisher Antibodies for CTBS
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CTBS
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Aliases for CTBS
Databases for CTBS
Disorders / Diseases for CTBS
Domains / Families for CTBS
Drugs / Compounds for CTBS
Expression for CTBS
Function for CTBS
Genomic Views for CTBS
Intellectual Property for CTBS
Orthologs for CTBS
Paralogs for CTBS
Pathways / Interactions for CTBS
Products for CTBS
Proteins for CTBS
Publications for CTBS
Search Box for CTBS
Summaries for CTBS
Transcripts for CTBS
Variants for CTBS
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