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Aliases for CTBP1-AS2 Gene

Subcategory (RNA class) for CTBP1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CTBP1-AS2 Gene

  • CTBP1 Antisense RNA 2 (Head To Head) 2 3 5
  • CTBP1 Antisense RNA 1 (Head To Head) 2 3
  • CTBP1 Antisense RNA 1 (Non-Protein Coding) 3
  • Chromosome 4 Open Reading Frame 42 2
  • CTBP1-AS1 3
  • C4orf42 3

External Ids for CTBP1-AS2 Gene

Previous HGNC Symbols for CTBP1-AS2 Gene

  • C4orf42
  • CTBP1-AS1

Summaries for CTBP1-AS2 Gene

GeneCards Summary for CTBP1-AS2 Gene

CTBP1-AS2 (CTBP1 Antisense RNA 2 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CTBP1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTBP1-AS2 Gene

Genomics for CTBP1-AS2 Gene

Regulatory Elements for CTBP1-AS2 Gene

Enhancers for CTBP1-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H001240 1.5 Ensembl ENCODE dbSUPER 32.9 -3.3 -3278 10 HDGF PKNOX1 ATF1 ARNT SIN3A YY1 ZNF766 GLIS2 ELK1 ZNF143 CTBP1-AS2 MAEA UVSSA CRIPAK NELFA ZNF141 PCGF3 HAUS3 ENSG00000270195 LOC100129917
GH04H001197 1.6 Ensembl ENCODE dbSUPER 28.9 -44.7 -44651 13 HDGF PKNOX1 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 FOS SP5 CRIPAK CTBP1-AS2 UVSSA CTBP1 MAEA RNF212 ENSG00000273179 LOC100130872 SPON2 LOC101928548
GH04H001212 1.4 Ensembl ENCODE dbSUPER 28.4 -33.3 -33269 7 HDGF PKNOX1 TBL1XR1 BMI1 BATF ZNF207 ATF7 ETV6 RUNX3 IKZF2 CTBP1-AS2 CRIPAK UVSSA MAEA CTBP1 LOC105374344 RNF212 CTBP1-AS
GH04H001191 1.3 Ensembl ENCODE dbSUPER 24.6 -55.5 -55540 4 RAD21 YY1 GLIS2 FOS ATF7 USF2 REST NR2F2 ZFP69B NFIC CRIPAK CTBP1-AS2 UVSSA NELFA CTBP1 MAEA GAK SLBP RNF212 SLC26A1
GH04H001351 1.1 ENCODE dbSUPER 24.4 +102.9 102864 0 RB1 ARID4B RAD21 CBX5 SCRT2 ZNF143 RCOR1 RUNX3 CREM THAP11 CRIPAK CTBP1-AS2 UVSSA MAEA CTBP1 ENSG00000254094
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTBP1-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for CTBP1-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164799 -600 2601 HDGF ATF1 ARNT ZFP64 SIN3A YY1 ZNF766 GLIS2 ELK1 ZNF143

Genomic Location for CTBP1-AS2 Gene

Chromosome:
4
Start:
1,249,300 bp from pter
End:
1,288,291 bp from pter
Size:
38,992 bases
Orientation:
Plus strand

Genomic View for CTBP1-AS2 Gene

Genes around CTBP1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTBP1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTBP1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTBP1-AS2 Gene

Proteins for CTBP1-AS2 Gene

Post-translational modifications for CTBP1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTBP1-AS2 Gene

Domains & Families for CTBP1-AS2 Gene

Suggested Antigen Peptide Sequences for CTBP1-AS2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for CTBP1-AS2 Gene

Function for CTBP1-AS2 Gene

Phenotypes From GWAS Catalog for CTBP1-AS2 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CTBP1-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTBP1-AS2 Gene

Localization for CTBP1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTBP1-AS2 Gene

Pathways & Interactions for CTBP1-AS2 Gene

SuperPathways for CTBP1-AS2 Gene

No Data Available

Interacting Proteins for CTBP1-AS2 Gene

Gene Ontology (GO) - Biological Process for CTBP1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTBP1-AS2 Gene

Drugs & Compounds for CTBP1-AS2 Gene

No Compound Related Data Available

Transcripts for CTBP1-AS2 Gene

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CTBP1-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CTBP1-AS2 Gene

No ASD Table

Relevant External Links for CTBP1-AS2 Gene

GeneLoc Exon Structure for
CTBP1-AS2
ECgene alternative splicing isoforms for
CTBP1-AS2

Expression for CTBP1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTBP1-AS2 Gene

genes like me logo Genes that share expression patterns with CTBP1-AS2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTBP1-AS2 Gene

Orthologs for CTBP1-AS2 Gene

Evolution for CTBP1-AS2 Gene

ENSEMBL:
Gene Tree for CTBP1-AS2 (if available)
TreeFam:
Gene Tree for CTBP1-AS2 (if available)

No data available for Orthologs for CTBP1-AS2 Gene

Paralogs for CTBP1-AS2 Gene

No data available for Paralogs for CTBP1-AS2 Gene

Variants for CTBP1-AS2 Gene

Sequence variations from dbSNP and Humsavar for CTBP1-AS2 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000248071 -- 1,249,984(+) GCAGA(C/T)TCTCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000365735 -- 1,248,861(+) CGGCA(-/CCCGCCCCGC)CCCGC intron-variant, upstream-variant-2KB
rs1000723951 -- 1,250,172(+) AATTT(C/T)GCTGT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000819786 -- 1,248,715(+) CAGCG(A/G)CCCGC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001488921 -- 1,248,685(+) GGAGA(A/G)CAGAC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for CTBP1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv2704n106 CNV deletion 24896259
dgv636n27 CNV loss 19166990
dgv8891n54 CNV loss 21841781
dgv8892n54 CNV loss 21841781
dgv8893n54 CNV gain 21841781
dgv8894n54 CNV loss 21841781
esv27609 CNV loss 19812545
nsv508988 CNV insertion 20534489
nsv593278 CNV loss 21841781
nsv593281 CNV loss 21841781
nsv593282 CNV gain 21841781
nsv593286 CNV gain 21841781
nsv593287 CNV gain 21841781
nsv593290 CNV loss 21841781
nsv593291 CNV gain+loss 21841781
nsv593293 CNV loss 21841781
nsv593297 CNV loss 21841781
nsv593298 CNV loss 21841781
nsv822425 CNV loss 20364138
nsv822433 CNV gain 20364138
nsv829835 CNV gain 17160897

Relevant External Links for CTBP1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTBP1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTBP1-AS2 Gene

Disorders for CTBP1-AS2 Gene

Relevant External Links for CTBP1-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTBP1-AS2

No disorders were found for CTBP1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTBP1-AS2 Gene

Publications for CTBP1-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60
  3. A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations. (PMID: 22456796) Imamura M … Kadowaki T (Human molecular genetics 2012) 3 60
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual JF … Vidal M (Nature 2005) 3 60
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for CTBP1-AS2 Gene

Sources for CTBP1-AS2 Gene

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