Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CTBP1-AS2 Gene

Subcategory (RNA class) for CTBP1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CTBP1-AS2 Gene

  • CTBP1 Antisense RNA 2 (Head To Head) 2 3 5
  • CTBP1 Antisense RNA 1 (Head To Head) 2 3
  • CTBP1 Antisense RNA 1 (Non-Protein Coding) 3
  • Chromosome 4 Open Reading Frame 42 2
  • CTBP1-AS1 3
  • C4orf42 3

External Ids for CTBP1-AS2 Gene

Previous HGNC Symbols for CTBP1-AS2 Gene

  • C4orf42
  • CTBP1-AS1

Summaries for CTBP1-AS2 Gene

GeneCards Summary for CTBP1-AS2 Gene

CTBP1-AS2 (CTBP1 Antisense RNA 2 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTBP1-AS2 Gene

Genomics for CTBP1-AS2 Gene

Regulatory Elements for CTBP1-AS2 Gene

Enhancers for CTBP1-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F001512 1.2 Ensembl ENCODE 32.5 +263.8 263764 1.6 ZNF76 YBX1 NFXL1 RAD21 GLIS2 ZNF302 ZNF416 ZNF207 ZNF548 RCOR1 HAUS3 MIR943 CTBP1-AS2 CRIPAK ENSG00000272588 LOC100129917 IDUA PDE6B ENSG00000270195 GC04M001514
GH04F001240 1.3 Ensembl ENCODE 24.9 -3.3 -3278 10.5 PKNOX1 ATF1 CREB3L1 WRNIP1 SIN3A YY1 GLIS2 ELK1 ZNF143 ZNF207 MAEA CTBP1-AS2 UVSSA CRIPAK CTBP1-AS
GH04F001197 1.1 ENCODE 28.9 -47.2 -47246 8.6 HDGF PKNOX1 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 FOS SP5 CRIPAK CTBP1-AS2 UVSSA CTBP1 MAEA ENSG00000273179 RNF212 LOC101928548 LOC100130872 SPON2
GH04F001212 1.1 Ensembl ENCODE 28.3 -33.3 -33269 8.0 HDGF PKNOX1 TBL1XR1 BMI1 RAD21 ZEB1 EGR1 SCRT2 ZNF207 ETV6 CTBP1-AS2 CRIPAK UVSSA MAEA CTBP1 LOC105374344 RNF212 CTBP1-AS
GH04F001191 1.1 Ensembl ENCODE 24.6 -55.5 -55540 5.0 PKNOX1 RAD21 YY1 GLIS2 CBX5 ZNF207 FOS USF2 REST TBX21 CTBP1-AS2 CRIPAK UVSSA CTBP1 MAEA RNF212 SLC26A1 FGFRL1 LOC101928548 ENSG00000273179
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTBP1-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for CTBP1-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001428722 -700 3201 PKNOX1 ATF1 CREB3L1 ZFP64 SIN3A YY1 GLIS2 ELK1 ZNF143 ZNF207
ENSR00001856925 1200 201 HMG20B KLF1 TFE3 ZBTB40 SMARCA4 POLR2A ZBTB48 NBN

Genomic Location for CTBP1-AS2 Gene

Chromosome:
4
Start:
1,249,300 bp from pter
End:
1,288,291 bp from pter
Size:
38,992 bases
Orientation:
Plus strand

Genomic View for CTBP1-AS2 Gene

Genes around CTBP1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTBP1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTBP1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTBP1-AS2 Gene

Proteins for CTBP1-AS2 Gene

Post-translational modifications for CTBP1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTBP1-AS2 Gene

Domains & Families for CTBP1-AS2 Gene

Suggested Antigen Peptide Sequences for CTBP1-AS2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for CTBP1-AS2 Gene

Function for CTBP1-AS2 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTBP1-AS2 Gene

Localization for CTBP1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTBP1-AS2 Gene

Pathways & Interactions for CTBP1-AS2 Gene

SuperPathways for CTBP1-AS2 Gene

No Data Available

Interacting Proteins for CTBP1-AS2 Gene

Gene Ontology (GO) - Biological Process for CTBP1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTBP1-AS2 Gene

Transcripts for CTBP1-AS2 Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTBP1-AS2 Gene

No ASD Table

Relevant External Links for CTBP1-AS2 Gene

GeneLoc Exon Structure for
CTBP1-AS2
ECgene alternative splicing isoforms for
CTBP1-AS2

Expression for CTBP1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CTBP1-AS2 Gene

genes like me logo Genes that share expression patterns with CTBP1-AS2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CTBP1-AS2 Gene

Orthologs for CTBP1-AS2 Gene

Evolution for CTBP1-AS2 Gene

ENSEMBL:
Gene Tree for CTBP1-AS2 (if available)
TreeFam:
Gene Tree for CTBP1-AS2 (if available)

No data available for Orthologs for CTBP1-AS2 Gene

Paralogs for CTBP1-AS2 Gene

No data available for Paralogs for CTBP1-AS2 Gene

Variants for CTBP1-AS2 Gene

Sequence variations from dbSNP and Humsavar for CTBP1-AS2 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs111409520 -- 1,248,717(+) GCGGC(C/G)CGCGC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs111887780 -- 1,248,295(+) CCCTC(A/C)CGCGT intron-variant, upstream-variant-2KB
rs112011861 -- 1,247,769(+) GGAGG(-/C)GGGGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs112187671 -- 1,251,103(+) GTGTT(C/T)GTCTG nc-transcript-variant, upstream-variant-2KB
rs112223170 -- 1,250,819(+) CCCGC(A/G/T)TGGAC nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CTBP1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv2704n106 CNV deletion 24896259
dgv636n27 CNV loss 19166990
dgv8891n54 CNV loss 21841781
dgv8892n54 CNV loss 21841781
dgv8893n54 CNV gain 21841781
dgv8894n54 CNV loss 21841781
esv27609 CNV loss 19812545
nsv508988 CNV insertion 20534489
nsv593278 CNV loss 21841781
nsv593281 CNV loss 21841781
nsv593282 CNV gain 21841781
nsv593286 CNV gain 21841781
nsv593287 CNV gain 21841781
nsv593290 CNV loss 21841781
nsv593291 CNV gain+loss 21841781
nsv593293 CNV loss 21841781
nsv593297 CNV loss 21841781
nsv593298 CNV loss 21841781
nsv822425 CNV loss 20364138
nsv822433 CNV gain 20364138
nsv829835 CNV gain 17160897

Relevant External Links for CTBP1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTBP1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTBP1-AS2 Gene

Disorders for CTBP1-AS2 Gene

Relevant External Links for CTBP1-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTBP1-AS2

No disorders were found for CTBP1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTBP1-AS2 Gene

Publications for CTBP1-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations. (PMID: 22456796) Imamura M. … Kadowaki T. (Hum. Mol. Genet. 2012) 3 64
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CTBP1-AS2 Gene

Sources for CTBP1-AS2 Gene

Content
Loading form....