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Aliases for CTBP1-AS Gene

Subcategory (RNA class) for CTBP1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CTBP1-AS Gene

  • CTBP1 Antisense RNA 2 3 5
  • Prostate Cancer Associated Transcript 10 2 3
  • PCAT10 3

External Ids for CTBP1-AS Gene

Summaries for CTBP1-AS Gene

GeneCards Summary for CTBP1-AS Gene

CTBP1-AS (CTBP1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTBP1-AS Gene

Genomics for CTBP1-AS Gene

Regulatory Elements for CTBP1-AS Gene

Enhancers for CTBP1-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F001207 1.1 ENCODE 0.8 -0.7 -709 4.2 HDGF PKNOX1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 SLC30A9 FOS CRIPAK CTBP1-AS2 UVSSA RNF212 CTBP1-AS LOC100130872 SPON2
GH04F001212 1.1 Ensembl ENCODE 0.4 +5.9 5912 8.0 HDGF PKNOX1 TBL1XR1 BMI1 RAD21 ZEB1 EGR1 SCRT2 ZNF207 ETV6 CTBP1-AS2 CRIPAK UVSSA MAEA CTBP1 LOC105374344 RNF212 CTBP1-AS
GH04F001240 1.3 Ensembl ENCODE 0.3 +35.9 35903 10.5 PKNOX1 ATF1 CREB3L1 WRNIP1 SIN3A YY1 GLIS2 ELK1 ZNF143 ZNF207 MAEA CTBP1-AS2 UVSSA CRIPAK CTBP1-AS
GH04F001232 0.7 ENCODE 0.3 +23.7 23655 3.0 CTCF RFX1 SAP130 BMI1 REST MNT RAD21 RARA NR2F2 POLR2A CRIPAK MAEA CTBP1-AS2 CTBP1-AS
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTBP1-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for CTBP1-AS Gene

Chromosome:
4
Start:
1,210,120 bp from pter
End:
1,218,591 bp from pter
Size:
8,472 bases
Orientation:
Plus strand

Genomic View for CTBP1-AS Gene

Genes around CTBP1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTBP1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTBP1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTBP1-AS Gene

Proteins for CTBP1-AS Gene

Post-translational modifications for CTBP1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTBP1-AS Gene

Domains & Families for CTBP1-AS Gene

Gene Families for CTBP1-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CTBP1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTBP1-AS Gene

Function for CTBP1-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTBP1-AS Gene

Localization for CTBP1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTBP1-AS Gene

Pathways & Interactions for CTBP1-AS Gene

SuperPathways for CTBP1-AS Gene

No Data Available

Interacting Proteins for CTBP1-AS Gene

Gene Ontology (GO) - Biological Process for CTBP1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTBP1-AS Gene

Transcripts for CTBP1-AS Gene

mRNA/cDNA for CTBP1-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTBP1-AS Gene

No ASD Table

Relevant External Links for CTBP1-AS Gene

GeneLoc Exon Structure for
CTBP1-AS
ECgene alternative splicing isoforms for
CTBP1-AS

Expression for CTBP1-AS Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CTBP1-AS Gene

Orthologs for CTBP1-AS Gene

Evolution for CTBP1-AS Gene

ENSEMBL:
Gene Tree for CTBP1-AS (if available)
TreeFam:
Gene Tree for CTBP1-AS (if available)

No data available for Orthologs for CTBP1-AS Gene

Paralogs for CTBP1-AS Gene

No data available for Paralogs for CTBP1-AS Gene

Variants for CTBP1-AS Gene

Sequence variations from dbSNP and Humsavar for CTBP1-AS Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs869320802 Pathogenic 1,213,028(-) CAGGC(C/T)GGATC intron-variant, reference, missense
rs1009901 -- 1,217,250(-) CTTCT(C/G)ACTGG intron-variant, nc-transcript-variant
rs1045466 -- 1,212,203(-) GGCAG(A/C)GGGCC nc-transcript-variant, utr-variant-3-prime
rs1045469 -- 1,212,161(-) GGCAT(C/G)TGTGT nc-transcript-variant, utr-variant-3-prime
rs1045470 -- 1,212,104(-) GAGGG(C/G)GCAGC nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CTBP1-AS Gene

Variant ID Type Subtype PubMed ID
dgv636n27 CNV loss 19166990
dgv8890n54 CNV loss 21841781
dgv8891n54 CNV loss 21841781
esv3569245 CNV loss 25503493
nsv508988 CNV insertion 20534489
nsv593278 CNV loss 21841781
nsv593281 CNV loss 21841781
nsv822425 CNV loss 20364138
nsv822430 CNV loss 20364138
nsv829835 CNV gain 17160897
nsv950331 CNV deletion 24416366

Relevant External Links for CTBP1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTBP1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTBP1-AS Gene

Disorders for CTBP1-AS Gene

Relevant External Links for CTBP1-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTBP1-AS

No disorders were found for CTBP1-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTBP1-AS Gene

Publications for CTBP1-AS Gene

  1. Androgen Receptor Coregulator CTBP1-AS Is Associated With Polycystic Ovary Syndrome in Chinese Women: A Preliminary Study. (PMID: 25552498) Liu Z. … Qu Q. (Reprod Sci 2014) 2 3 64
  2. Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer. (PMID: 23644382) Takayama K. … Inoue S. (EMBO J. 2013) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CTBP1-AS Gene

Sources for CTBP1-AS Gene

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