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Aliases for CTB-99A3.1 Gene

Subcategory (RNA class) for CTB-99A3.1 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTB-99A3.1 Gene

  • Uncharacterized CTB-99A3.1 3
  • AC008728.1 5

External Ids for CTB-99A3.1 Gene

Previous GeneCards Identifiers for CTB-99A3.1 Gene

  • GC05U902239

Summaries for CTB-99A3.1 Gene

GeneCards Summary for CTB-99A3.1 Gene

CTB-99A3.1 (Uncharacterized CTB-99A3.1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTB-99A3.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTB-99A3.1 Gene

Genomics for CTB-99A3.1 Gene

Regulatory Elements for CTB-99A3.1 Gene

Enhancers for CTB-99A3.1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H146532 0.7 ENCODE 12.3 -29.9 -29916 0 SMARCA5 CTCF ZNF654 MAZ TRIM22 ELF1 REST RAD21 GATA3 SCRT2 CTB-99A3.1 GPR151
GH05H146690 0.4 dbSUPER 10 +127.5 127526 1 RCOR1 MAFK CTB-99A3.1 PPP2R2B KRT8P48 RN7SL791P
GH05H146565 0.7 Ensembl 0.7 +2.8 2840 0 CTCF CEBPG ZNF644 RAD21 YY1 SMC3 ZNF143 RCOR1 CREM ZBTB10 CTB-99A3.1 GC05M146581
GH05H146560 0.6 Ensembl ENCODE 0.7 -2.5 -2471 1 JUND PPP2R2B LARS CTB-99A3.1 GPR151
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTB-99A3.1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTB-99A3.1 Gene

Chromosome:
5
Start:
146,563,161 bp from pter
End:
146,621,829 bp from pter
Size:
58,669 bases
Orientation:
Plus strand

Genomic View for CTB-99A3.1 Gene

Genes around CTB-99A3.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTB-99A3.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTB-99A3.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTB-99A3.1 Gene

Proteins for CTB-99A3.1 Gene

Post-translational modifications for CTB-99A3.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTB-99A3.1 Gene

Domains & Families for CTB-99A3.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTB-99A3.1 Gene

Function for CTB-99A3.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTB-99A3.1 Gene

Localization for CTB-99A3.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTB-99A3.1 Gene

Pathways & Interactions for CTB-99A3.1 Gene

SuperPathways for CTB-99A3.1 Gene

No Data Available

Interacting Proteins for CTB-99A3.1 Gene

Gene Ontology (GO) - Biological Process for CTB-99A3.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTB-99A3.1 Gene

Drugs & Compounds for CTB-99A3.1 Gene

No Compound Related Data Available

Transcripts for CTB-99A3.1 Gene

mRNA/cDNA for CTB-99A3.1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTB-99A3.1 Gene

No ASD Table

Relevant External Links for CTB-99A3.1 Gene

GeneLoc Exon Structure for
CTB-99A3.1

Expression for CTB-99A3.1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTB-99A3.1 Gene

Orthologs for CTB-99A3.1 Gene

Evolution for CTB-99A3.1 Gene

ENSEMBL:
Gene Tree for CTB-99A3.1 (if available)
TreeFam:
Gene Tree for CTB-99A3.1 (if available)

No data available for Orthologs for CTB-99A3.1 Gene

Paralogs for CTB-99A3.1 Gene

No data available for Paralogs for CTB-99A3.1 Gene

Variants for CTB-99A3.1 Gene

Sequence variations from dbSNP and Humsavar for CTB-99A3.1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000023041 -- 146,588,767(+) ACAGT(C/T)CATTT intron-variant
rs1000036710 -- 146,570,724(+) GTCCC(C/T)AAAAC intron-variant
rs1000134660 -- 146,564,096(+) ACTAA(A/C)CTATC intron-variant
rs1000272443 -- 146,587,604(+) CATCT(G/T)TGATG intron-variant
rs1000354645 -- 146,588,417(+) CTTCT(-/AATA)AATAC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CTB-99A3.1 Gene

Disorders for CTB-99A3.1 Gene

No disorders were found for CTB-99A3.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CTB-99A3.1 Gene

Publications for CTB-99A3.1 Gene

No publications were found for CTB-99A3.1 Gene.

Products for CTB-99A3.1 Gene

Sources for CTB-99A3.1 Gene

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