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Aliases for CTB-49A3.2 Gene

Subcategory (RNA class) for CTB-49A3.2 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTB-49A3.2 Gene

  • Uncharacterized CTB-49A3.2 3

External Ids for CTB-49A3.2 Gene

Previous GeneCards Identifiers for CTB-49A3.2 Gene

  • GC05U902492

Summaries for CTB-49A3.2 Gene

GeneCards Summary for CTB-49A3.2 Gene

CTB-49A3.2 (Uncharacterized CTB-49A3.2) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTB-49A3.2 Gene

Genomics for CTB-49A3.2 Gene

Regulatory Elements for CTB-49A3.2 Gene

Enhancers for CTB-49A3.2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G133216 0.7 FANTOM5 10.7 +55.7 55722 0.1 L3MBTL2 NR4A1 ZNF175 CEBPB CEBPG ZNF518A ZNF589 ATF3 TRIM24 ZNF584 ENSG00000249478 CTB-49A3.2 RPL6P15
GH05G133170 0.6 ENCODE 0.4 +10.5 10466 0.2 SOX13 CTCF KLF1 CBX3 SP5 TRIM22 DNMT1 FOXA1 ENSG00000249478 MIR1289-2 RPL6P15 CTB-49A3.2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTB-49A3.2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTB-49A3.2 Gene

Chromosome:
5
Start:
133,160,438 bp from pter
End:
133,225,143 bp from pter
Size:
64,706 bases
Orientation:
Plus strand

Genomic View for CTB-49A3.2 Gene

Genes around CTB-49A3.2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTB-49A3.2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTB-49A3.2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTB-49A3.2 Gene

Proteins for CTB-49A3.2 Gene

Post-translational modifications for CTB-49A3.2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTB-49A3.2 Gene

Domains & Families for CTB-49A3.2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTB-49A3.2 Gene

Function for CTB-49A3.2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTB-49A3.2 Gene

Localization for CTB-49A3.2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTB-49A3.2 Gene

Pathways & Interactions for CTB-49A3.2 Gene

SuperPathways for CTB-49A3.2 Gene

No Data Available

Interacting Proteins for CTB-49A3.2 Gene

Gene Ontology (GO) - Biological Process for CTB-49A3.2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTB-49A3.2 Gene

Drugs & Compounds for CTB-49A3.2 Gene

No Compound Related Data Available

Transcripts for CTB-49A3.2 Gene

mRNA/cDNA for CTB-49A3.2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTB-49A3.2 Gene

No ASD Table

Relevant External Links for CTB-49A3.2 Gene

GeneLoc Exon Structure for
CTB-49A3.2

Expression for CTB-49A3.2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTB-49A3.2 Gene

Orthologs for CTB-49A3.2 Gene

Evolution for CTB-49A3.2 Gene

ENSEMBL:
Gene Tree for CTB-49A3.2 (if available)
TreeFam:
Gene Tree for CTB-49A3.2 (if available)

No data available for Orthologs for CTB-49A3.2 Gene

Paralogs for CTB-49A3.2 Gene

No data available for Paralogs for CTB-49A3.2 Gene

Variants for CTB-49A3.2 Gene

Sequence variations from dbSNP and Humsavar for CTB-49A3.2 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000020894 -- 133,209,335(+) CTTGG(G/T)TCCAG intron-variant, upstream-variant-2KB
rs1000026893 -- 133,224,866(+) AAAAG(A/C)AGAGC intron-variant, nc-transcript-variant
rs1000045700 -- 133,211,233(+) TCTTA(C/T)AGATT intron-variant
rs1000136891 -- 133,217,982(+) TGAAA(A/C)CTATG intron-variant
rs1000175107 -- 133,212,459(+) GCTGA(A/G)CCCTA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CTB-49A3.2 Gene

Disorders for CTB-49A3.2 Gene

Relevant External Links for CTB-49A3.2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTB-49A3.2

No disorders were found for CTB-49A3.2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTB-49A3.2 Gene

Publications for CTB-49A3.2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CTB-49A3.2 Gene

Sources for CTB-49A3.2 Gene

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