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Aliases for CTB-3M24.3 Gene

Subcategory (RNA class) for CTB-3M24.3 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTB-3M24.3 Gene

  • Uncharacterized CTB-3M24.3 3
  • AC010608.1 5

External Ids for CTB-3M24.3 Gene

Previous GeneCards Identifiers for CTB-3M24.3 Gene

  • GC05U902173

Summaries for CTB-3M24.3 Gene

GeneCards Summary for CTB-3M24.3 Gene

CTB-3M24.3 (Uncharacterized CTB-3M24.3) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTB-3M24.3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTB-3M24.3 Gene

Genomics for CTB-3M24.3 Gene

Regulatory Elements for CTB-3M24.3 Gene

Enhancers for CTB-3M24.3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H134002 1.4 ENCODE dbSUPER 14.6 +617.0 616966 4.9 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF143 SP3 DDX46 ZCCHC10 ENSG00000271128 CTB-3M24.3 ENSG00000270892 VDAC1 GC05P134006 C5orf15
GH05H132961 1.2 ENCODE 14.6 -424.6 -424556 3.6 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ENSG00000231585 AFF4 IL4 P4HA2-AS1 RAD50 CTB-3M24.3 LOC107987500 ENSG00000224431 ZCCHC10 GDF9
GH05H132555 1.2 ENCODE 14.6 -829.9 -829916 3.3 MLX FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC ZC3H11A ZNF610 GLIS1 ENSG00000231585 RAD50 AFF4 IL4 P4HA2-AS1 LOC107987500 CTB-3M24.3 ENSG00000224431 ZCCHC10 ENSG00000202533
GH05H133466 0.8 ENCODE 14.7 +80.1 80122 2.1 ZSCAN5A HDGF ZNF473 SUZ12 ZNF493 ZSCAN4 ZNF266 KLF17 PLRG1 ZIC2 AFF4 ENSG00000202533 LOC105379175 CTB-3M24.3 ENSG00000271128 IL4 MIR1289-2 RAD50 ZCCHC10 ENSG00000280104
GH05H133396 0.6 ENCODE 0.4 +9.3 9330 1.4 SRF RFX1 EED RUNX3 ZIC2 RELA MIR1289-2 CTB-3M24.3 PIR54441
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTB-3M24.3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTB-3M24.3 Gene

Genomic Locations for CTB-3M24.3 Gene
chr5:133,387,523-133,395,362
(GRCh38/hg38)
Size:
7,840 bases
Orientation:
Plus strand
chr5:132,723,465-132,724,241
(GRCh37/hg19)

Genomic View for CTB-3M24.3 Gene

Genes around CTB-3M24.3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTB-3M24.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTB-3M24.3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTB-3M24.3 Gene

Proteins for CTB-3M24.3 Gene

Post-translational modifications for CTB-3M24.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTB-3M24.3 Gene

Domains & Families for CTB-3M24.3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTB-3M24.3 Gene

Function for CTB-3M24.3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTB-3M24.3 Gene

Localization for CTB-3M24.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTB-3M24.3 Gene

Pathways & Interactions for CTB-3M24.3 Gene

SuperPathways for CTB-3M24.3 Gene

No Data Available

Interacting Proteins for CTB-3M24.3 Gene

Gene Ontology (GO) - Biological Process for CTB-3M24.3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTB-3M24.3 Gene

Drugs & Compounds for CTB-3M24.3 Gene

No Compound Related Data Available

Transcripts for CTB-3M24.3 Gene

mRNA/cDNA for CTB-3M24.3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTB-3M24.3 Gene

No ASD Table

Relevant External Links for CTB-3M24.3 Gene

GeneLoc Exon Structure for
CTB-3M24.3

Expression for CTB-3M24.3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTB-3M24.3 Gene

Orthologs for CTB-3M24.3 Gene

Evolution for CTB-3M24.3 Gene

ENSEMBL:
Gene Tree for CTB-3M24.3 (if available)
TreeFam:
Gene Tree for CTB-3M24.3 (if available)

No data available for Orthologs for CTB-3M24.3 Gene

Paralogs for CTB-3M24.3 Gene

No data available for Paralogs for CTB-3M24.3 Gene

Variants for CTB-3M24.3 Gene

Sequence variations from dbSNP and Humsavar for CTB-3M24.3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000059100 -- 133,385,160(+) CGGGC(C/T)CTCGA intron-variant, nc-transcript-variant
rs1000151321 -- 133,383,937(+) AAATT(C/T)CCCTT intron-variant, nc-transcript-variant
rs1000479680 -- 133,383,748(+) GGCGG(C/T)TGATT intron-variant, nc-transcript-variant
rs1000908535 -- 133,389,821(+) AAATA(C/T)CTTGG intron-variant
rs1000958932 -- 133,390,055(+) GGGGC(A/G)TGGAG intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CTB-3M24.3 Gene

Disorders for CTB-3M24.3 Gene

No disorders were found for CTB-3M24.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CTB-3M24.3 Gene

Publications for CTB-3M24.3 Gene

No publications were found for CTB-3M24.3 Gene.

Products for CTB-3M24.3 Gene

Sources for CTB-3M24.3 Gene

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