Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CTB-30L5.1 Gene

Subcategory (RNA class) for CTB-30L5.1 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for CTB-30L5.1 Gene

  • Uncharacterized CTB-30L5.1 3
  • CTB-111H14.1 3

External Ids for CTB-30L5.1 Gene

Summaries for CTB-30L5.1 Gene

GeneCards Summary for CTB-30L5.1 Gene

CTB-30L5.1 (Uncharacterized CTB-30L5.1) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTB-30L5.1 Gene

Genomics for CTB-30L5.1 Gene

Regulatory Elements for CTB-30L5.1 Gene

Enhancers for CTB-30L5.1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G106610 0.8 ENCODE 0.7 +4.1 4115 2.1 PKNOX1 ATF1 CBX3 CREB3L1 BMI1 FEZF1 RAD21 YY1 CBX5 SCRT2 CCDC71L CTB-30L5.1 ENSG00000267052
GH07G106607 0.9 Ensembl ENCODE 0.4 +6.7 6738 2.5 HNRNPUL1 JUN JUND FOXK2 IKZF1 TARDBP NBN ZNF24 FOS FOXJ2 CCDC71L CTB-30L5.1 ENSG00000267052
GH07G106622 0.8 ENCODE 0.4 -7.5 -7478 2.2 ESRRA PKNOX1 CBX3 GTF2E2 ZMYM3 CEBPG YY1 ZNF316 FOSL2 FOS CCDC71L LOC105375440 CTB-30L5.1
GH07G106603 0.8 ENCODE 0.4 +12.2 12184 0.2 HDAC1 ATF1 PKNOX1 TBL1XR1 ZNF335 GATA2 CREM USF2 TFDP1 SMARCA4 ENSG00000267052 CTB-30L5.1
GH07G106604 0.8 ENCODE 0.4 +11.0 11036 0.9 HDAC1 PKNOX1 ATF1 ETV1 ZMYM3 CEBPG CHAMP1 IRF9 ZNF316 GATA2 ENSG00000267052 CTB-30L5.1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTB-30L5.1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTB-30L5.1 Gene

Chromosome:
7
Start:
106,570,755 bp from pter
End:
106,615,753 bp from pter
Size:
44,999 bases
Orientation:
Minus strand

Genomic View for CTB-30L5.1 Gene

Genes around CTB-30L5.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTB-30L5.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTB-30L5.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTB-30L5.1 Gene

Proteins for CTB-30L5.1 Gene

Post-translational modifications for CTB-30L5.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTB-30L5.1 Gene

Domains & Families for CTB-30L5.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTB-30L5.1 Gene

Function for CTB-30L5.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTB-30L5.1 Gene

Localization for CTB-30L5.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTB-30L5.1 Gene

Pathways & Interactions for CTB-30L5.1 Gene

SuperPathways for CTB-30L5.1 Gene

No Data Available

Interacting Proteins for CTB-30L5.1 Gene

Gene Ontology (GO) - Biological Process for CTB-30L5.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTB-30L5.1 Gene

Drugs & Compounds for CTB-30L5.1 Gene

No Compound Related Data Available

Transcripts for CTB-30L5.1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CTB-30L5.1 Gene

No ASD Table

Relevant External Links for CTB-30L5.1 Gene

GeneLoc Exon Structure for
CTB-30L5.1

No data available for mRNA/cDNA for CTB-30L5.1 Gene

Expression for CTB-30L5.1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTB-30L5.1 Gene

Orthologs for CTB-30L5.1 Gene

No data available for Orthologs and Evolution for CTB-30L5.1 Gene

Paralogs for CTB-30L5.1 Gene

No data available for Paralogs for CTB-30L5.1 Gene

Variants for CTB-30L5.1 Gene

Sequence variations from dbSNP and Humsavar for CTB-30L5.1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs869025233 Uncertain significance 106,660,419(-) AGGAG(A/C)GCTGC intron-variant, reference, missense
rs1000002800 -- 106,605,861(+) GAAAT(C/T)TGTAT intron-variant
rs1000024112 -- 106,640,746(+) TCACT(A/G)GCAAC intron-variant
rs1000025252 -- 106,624,838(+) CATGA(-/GTGGGTGG)GTGGG intron-variant
rs1000037496 -- 106,607,352(+) GCTCG(C/T)ACCTC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CTB-30L5.1 Gene

Disorders for CTB-30L5.1 Gene

No disorders were found for CTB-30L5.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CTB-30L5.1 Gene

Publications for CTB-30L5.1 Gene

No publications were found for CTB-30L5.1 Gene.

Products for CTB-30L5.1 Gene

Sources for CTB-30L5.1 Gene

Content
Loading form....