Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CTB-1I21.1 Gene

Subcategory (RNA class) for CTB-1I21.1 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTB-1I21.1 Gene

  • Uncharacterized CTB-1I21.1 3

External Ids for CTB-1I21.1 Gene

Summaries for CTB-1I21.1 Gene

GeneCards Summary for CTB-1I21.1 Gene

CTB-1I21.1 (Uncharacterized CTB-1I21.1) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTB-1I21.1 Gene

Genomics for CTB-1I21.1 Gene

Regulatory Elements for CTB-1I21.1 Gene

Enhancers for CTB-1I21.1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G136729 1 ENCODE 0.7 -4.7 -4725 1.5 ATF1 ZNF133 FEZF1 GLI4 ZNF2 TCF12 GLIS2 GATA2 FOS SP3 TRPC7 CTB-1I21.1 GC05P136712
GH05G136723 0.7 ENCODE 0.4 -10.7 -10732 1.5 PKNOX1 DPF2 ATF2 ZNF217 CTBP1 JUND GATA3 BCL6B RCOR2 ZKSCAN8 CTB-1I21.1 GC05P136712
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTB-1I21.1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTB-1I21.1 Gene

Chromosome:
5
Start:
136,734,927 bp from pter
End:
136,755,619 bp from pter
Size:
20,693 bases
Orientation:
Plus strand

Genomic View for CTB-1I21.1 Gene

Genes around CTB-1I21.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTB-1I21.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTB-1I21.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTB-1I21.1 Gene

Proteins for CTB-1I21.1 Gene

Post-translational modifications for CTB-1I21.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTB-1I21.1 Gene

Domains & Families for CTB-1I21.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTB-1I21.1 Gene

Function for CTB-1I21.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTB-1I21.1 Gene

Localization for CTB-1I21.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTB-1I21.1 Gene

Pathways & Interactions for CTB-1I21.1 Gene

SuperPathways for CTB-1I21.1 Gene

No Data Available

Interacting Proteins for CTB-1I21.1 Gene

Gene Ontology (GO) - Biological Process for CTB-1I21.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTB-1I21.1 Gene

Drugs & Compounds for CTB-1I21.1 Gene

No Compound Related Data Available

Transcripts for CTB-1I21.1 Gene

mRNA/cDNA for CTB-1I21.1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTB-1I21.1 Gene

No ASD Table

Relevant External Links for CTB-1I21.1 Gene

GeneLoc Exon Structure for
CTB-1I21.1

Expression for CTB-1I21.1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTB-1I21.1 Gene

Orthologs for CTB-1I21.1 Gene

Evolution for CTB-1I21.1 Gene

ENSEMBL:
Gene Tree for CTB-1I21.1 (if available)
TreeFam:
Gene Tree for CTB-1I21.1 (if available)

No data available for Orthologs for CTB-1I21.1 Gene

Paralogs for CTB-1I21.1 Gene

No data available for Paralogs for CTB-1I21.1 Gene

Variants for CTB-1I21.1 Gene

Sequence variations from dbSNP and Humsavar for CTB-1I21.1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000542192 -- 136,753,950(+) GAATC(C/T)GTCTG nc-transcript-variant
rs1001064601 -- 136,753,599(+) GTTTT(C/T)GTCAT upstream-variant-2KB
rs1001227557 -- 136,753,396(+) CATCC(C/G)TGTCT upstream-variant-2KB
rs1002175162 -- 136,755,464(+) CATTT(C/T)AGTTT nc-transcript-variant
rs1003487843 -- 136,751,944(+) GTGGT(A/T)GAACC upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CTB-1I21.1 Gene

Disorders for CTB-1I21.1 Gene

No disorders were found for CTB-1I21.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CTB-1I21.1 Gene

Publications for CTB-1I21.1 Gene

No publications were found for CTB-1I21.1 Gene.

Products for CTB-1I21.1 Gene

Sources for CTB-1I21.1 Gene

Content
Loading form....