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Aliases for CTB-178M22.2 Gene

Subcategory (RNA class) for CTB-178M22.2 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTB-178M22.2 Gene

  • Uncharacterized LOC101927862 3 5

External Ids for CTB-178M22.2 Gene

Previous GeneCards Identifiers for CTB-178M22.2 Gene

  • GC05M167658

Summaries for CTB-178M22.2 Gene

GeneCards Summary for CTB-178M22.2 Gene

CTB-178M22.2 (Uncharacterized LOC101927862) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTB-178M22.2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTB-178M22.2 Gene

Genomics for CTB-178M22.2 Gene

Regulatory Elements for CTB-178M22.2 Gene

Enhancers for CTB-178M22.2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H168277 0.9 Ensembl ENCODE dbSUPER 10.1 -45.5 -45474 1 HNF4A RAD21 CTB-178M22.2 RARS WWC1
GH05H168226 1.3 FANTOM5 Ensembl ENCODE 0.7 +4.5 4466 1 JUN EBF1 EED ATF7 RUNX3 IKZF2 CREM EGR2 MAZ CBFB LOC105377708 CTB-178M22.2
GH05H168268 1.5 Ensembl ENCODE dbSUPER 0.3 -37.7 -37716 2 ARID4B SIN3A DMAP1 ZNF2 TCF12 ZNF143 RUNX3 DEK SP3 SP5 RARS WWC1 CTB-178M22.2
GH05H168219 1.1 Ensembl ENCODE 0.4 +12.5 12480 0 ELF3 CTCF FOXA2 ETV1 ZNF384 BATF BRCA1 RAD21 RFX5 ETS1 LOC105377708 CTB-178M22.2
GH05H168260 1.1 ENCODE dbSUPER 0.3 -28.5 -28541 1 ZNF146 FEZF1 ZNF2 HIC1 POLR2A ZNF302 ZSCAN5C ZNF391 ZBTB20 GFI1B CTB-178M22.2 WWC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTB-178M22.2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTB-178M22.2 Gene

Chromosome:
5
Start:
168,229,583 bp from pter
End:
168,232,372 bp from pter
Size:
2,790 bases
Orientation:
Minus strand

Genomic View for CTB-178M22.2 Gene

Genes around CTB-178M22.2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTB-178M22.2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTB-178M22.2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTB-178M22.2 Gene

Proteins for CTB-178M22.2 Gene

Post-translational modifications for CTB-178M22.2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTB-178M22.2 Gene

Domains & Families for CTB-178M22.2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTB-178M22.2 Gene

Function for CTB-178M22.2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTB-178M22.2 Gene

Localization for CTB-178M22.2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTB-178M22.2 Gene

Pathways & Interactions for CTB-178M22.2 Gene

SuperPathways for CTB-178M22.2 Gene

No Data Available

Interacting Proteins for CTB-178M22.2 Gene

Gene Ontology (GO) - Biological Process for CTB-178M22.2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTB-178M22.2 Gene

Drugs & Compounds for CTB-178M22.2 Gene

No Compound Related Data Available

Transcripts for CTB-178M22.2 Gene

mRNA/cDNA for CTB-178M22.2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTB-178M22.2 Gene

No ASD Table

Relevant External Links for CTB-178M22.2 Gene

GeneLoc Exon Structure for
CTB-178M22.2

Expression for CTB-178M22.2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTB-178M22.2 Gene

mRNA differential expression in normal tissues according to GTEx for CTB-178M22.2 Gene

This gene is overexpressed in Kidney - Cortex (x12.9).
genes like me logo Genes that share expression patterns with CTB-178M22.2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTB-178M22.2 Gene

Orthologs for CTB-178M22.2 Gene

Evolution for CTB-178M22.2 Gene

ENSEMBL:
Gene Tree for CTB-178M22.2 (if available)
TreeFam:
Gene Tree for CTB-178M22.2 (if available)

No data available for Orthologs for CTB-178M22.2 Gene

Paralogs for CTB-178M22.2 Gene

No data available for Paralogs for CTB-178M22.2 Gene

Variants for CTB-178M22.2 Gene

Sequence variations from dbSNP and Humsavar for CTB-178M22.2 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000882180 -- 168,231,249(+) AAGCA(C/T)GTAGC intron-variant
rs1000982783 -- 168,231,459(+) TGTGT(A/T)AGAGA intron-variant
rs1001139229 -- 168,231,660(+) TTTGG(A/G)AGGCC intron-variant
rs1001188434 -- 168,231,898(+) GGAGA(A/C)CAGCC intron-variant
rs1001654506 -- 168,231,918(+) TAGGG(A/G)GACCC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CTB-178M22.2 Gene

Disorders for CTB-178M22.2 Gene

Relevant External Links for CTB-178M22.2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTB-178M22.2

No disorders were found for CTB-178M22.2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTB-178M22.2 Gene

Publications for CTB-178M22.2 Gene

No publications were found for CTB-178M22.2 Gene.

Products for CTB-178M22.2 Gene

Sources for CTB-178M22.2 Gene

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