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Aliases for CTB-113P19.1 Gene

Subcategory (RNA class) for CTB-113P19.1 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTB-113P19.1 Gene

  • Uncharacterized LOC101927096 3 5

External Ids for CTB-113P19.1 Gene

Previous GeneCards Identifiers for CTB-113P19.1 Gene

  • GC05P151058

Summaries for CTB-113P19.1 Gene

GeneCards Summary for CTB-113P19.1 Gene

CTB-113P19.1 (Uncharacterized LOC101927096) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTB-113P19.1 Gene

Genomics for CTB-113P19.1 Gene

Regulatory Elements for CTB-113P19.1 Gene

Enhancers for CTB-113P19.1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G151668 1.5 Ensembl ENCODE dbSUPER 22.8 +1.4 1357 20.0 HDGF PKNOX1 ARNT CREB3L1 SIN3A ARID4B ZNF48 YY1 GATA2 ZNF143 LOC105378231 CTB-113P19.1 LOC105378235 RPLP1P6 SPARC G3BP1 ATOX1
GH05G151692 2 FANTOM5 Ensembl ENCODE dbSUPER 6.1 +19.9 19930 9.5 HNRNPUL1 FOXA2 PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF300P1 RPLP1P6 ATOX1 G3BP1 SPARC CTB-113P19.1 LOC105378231 RN7SKP232
GH05G151706 1.7 FANTOM5 Ensembl ENCODE dbSUPER 5.8 +31.2 31207 2.7 HDAC1 ELF3 TBP HDGF FOXA2 CBX3 ATF1 BMI1 RARA YY1 SPARC CTB-113P19.1 SLC36A3 RN7SKP232 ENSG00000272112
GH05G151702 1.4 Ensembl ENCODE dbSUPER 6 +25.8 25847 1.5 HDGF ATF1 PKNOX1 CREB3L1 NFIB ARNT NFRKB ZNF335 GTF3C2 POLR3A CTB-113P19.1 LOC105378231 RN7SKP232 SPARC
GH05G151662 1.4 Ensembl ENCODE dbSUPER 0.4 -11.9 -11904 5.1 TBP TBL1XR1 ZFP64 RAD21 YY1 FOS RELB IKZF2 JUNB ELF1 LOC105378231 SPARC LOC105378235 RPLP1P6 ATOX1 G3BP1 FAT2 CTB-113P19.1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTB-113P19.1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTB-113P19.1 Gene

Chromosome:
5
Start:
151,676,945 bp from pter
End:
151,724,782 bp from pter
Size:
47,838 bases
Orientation:
Plus strand

Genomic View for CTB-113P19.1 Gene

Genes around CTB-113P19.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTB-113P19.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTB-113P19.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTB-113P19.1 Gene

Proteins for CTB-113P19.1 Gene

Post-translational modifications for CTB-113P19.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTB-113P19.1 Gene

Domains & Families for CTB-113P19.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTB-113P19.1 Gene

Function for CTB-113P19.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTB-113P19.1 Gene

Localization for CTB-113P19.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTB-113P19.1 Gene

Pathways & Interactions for CTB-113P19.1 Gene

SuperPathways for CTB-113P19.1 Gene

No Data Available

Interacting Proteins for CTB-113P19.1 Gene

Gene Ontology (GO) - Biological Process for CTB-113P19.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTB-113P19.1 Gene

Drugs & Compounds for CTB-113P19.1 Gene

No Compound Related Data Available

Transcripts for CTB-113P19.1 Gene

mRNA/cDNA for CTB-113P19.1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTB-113P19.1 Gene

No ASD Table

Relevant External Links for CTB-113P19.1 Gene

GeneLoc Exon Structure for
CTB-113P19.1

Expression for CTB-113P19.1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTB-113P19.1 Gene

mRNA differential expression in normal tissues according to GTEx for CTB-113P19.1 Gene

This gene is overexpressed in Artery - Aorta (x4.0).
genes like me logo Genes that share expression patterns with CTB-113P19.1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTB-113P19.1 Gene

Orthologs for CTB-113P19.1 Gene

Evolution for CTB-113P19.1 Gene

ENSEMBL:
Gene Tree for CTB-113P19.1 (if available)
TreeFam:
Gene Tree for CTB-113P19.1 (if available)

No data available for Orthologs for CTB-113P19.1 Gene

Paralogs for CTB-113P19.1 Gene

No data available for Paralogs for CTB-113P19.1 Gene

Variants for CTB-113P19.1 Gene

Sequence variations from dbSNP and Humsavar for CTB-113P19.1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000434093 -- 151,676,393(+) GGTGC(C/T)AAGAT intron-variant, upstream-variant-2KB
rs1000673656 -- 151,676,803(+) TACTC(C/T)CTCTG intron-variant, upstream-variant-2KB
rs1000737970 -- 151,682,129(+) GACTC(A/C)CTGCT intron-variant
rs1000897134 -- 151,681,272(+) TGCAG(C/T)TACAA intron-variant
rs1001278819 -- 151,675,524(+) TGGCA(C/T)ATTCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CTB-113P19.1 Gene

Variant ID Type Subtype PubMed ID
nsv1026176 CNV gain 25217958
nsv5069 CNV insertion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for CTB-113P19.1 Gene

Disorders for CTB-113P19.1 Gene

Relevant External Links for CTB-113P19.1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTB-113P19.1

No disorders were found for CTB-113P19.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTB-113P19.1 Gene

Publications for CTB-113P19.1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CTB-113P19.1 Gene

Sources for CTB-113P19.1 Gene

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