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Aliases for CTAGE9 Gene

Aliases for CTAGE9 Gene

  • CTAGE Family Member 9 2 3 5
  • CTAGE Family, Member 9 2
  • Protein CTAGE-9 4

External Ids for CTAGE9 Gene

Previous GeneCards Identifiers for CTAGE9 Gene

  • GC06M132075
  • GC06M132030
  • GC07M143303

Summaries for CTAGE9 Gene

GeneCards Summary for CTAGE9 Gene

CTAGE9 (CTAGE Family Member 9) is a Protein Coding gene. An important paralog of this gene is CTAGE8.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTAGE9 Gene

Genomics for CTAGE9 Gene

Regulatory Elements for CTAGE9 Gene

Enhancers for CTAGE9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F131627 0.6 ENCODE 13 +82.9 82901 2.0 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 ARG1 LOC100421775 CTGF ENPP1 CTAGE9 MED23
GH06F131715 0.7 Ensembl 0.8 -4.7 -4745 0.3 CTAGE9 GC06M131781
GH06F131738 0.2 ENCODE 0.3 -28.3 -28259 1.4 BHLHE40 FOS CTAGE9 GC06M131781
GH06F131732 0.8 Ensembl ENCODE 0.3 -22.6 -22603 1.5 ZFHX2 JUND POLR2A ZNF384 FOS EGR2 CTAGE9 GC06M131781
GH06F131753 0.4 ENCODE 0.2 -44.3 -44268 2.9 ATF1 MLX ARID4B ZNF48 SLC30A9 FOS SP5 NFYC MXD4 MIER2 ENPP1 GC06M131781 CTAGE9
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CTAGE9 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTAGE9 Gene

Chromosome:
6
Start:
131,708,441 bp from pter
End:
131,711,017 bp from pter
Size:
2,577 bases
Orientation:
Minus strand

Genomic View for CTAGE9 Gene

Genes around CTAGE9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTAGE9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTAGE9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTAGE9 Gene

Proteins for CTAGE9 Gene

  • Protein details for CTAGE9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A4FU28-CTGE9_HUMAN
    Recommended name:
    cTAGE family member 9
    Protein Accession:
    A4FU28

    Protein attributes for CTAGE9 Gene

    Size:
    777 amino acids
    Molecular mass:
    87953 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CTAGE9 Gene

Post-translational modifications for CTAGE9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CTAGE9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CTAGE9 Gene

Domains & Families for CTAGE9 Gene

Gene Families for CTAGE9 Gene

Protein Domains for CTAGE9 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CTAGE9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A4FU28

UniProtKB/Swiss-Prot:

CTGE9_HUMAN :
  • Belongs to the cTAGE family.
Family:
  • Belongs to the cTAGE family.
genes like me logo Genes that share domains with CTAGE9: view

Function for CTAGE9 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTAGE9 Gene

Localization for CTAGE9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CTAGE9 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CTAGE9 Gene COMPARTMENTS Subcellular localization image for CTAGE9 gene
Compartment Confidence
nucleus 2
cytosol 1
endoplasmic reticulum 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for CTAGE9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CTAGE9: view

Pathways & Interactions for CTAGE9 Gene

SuperPathways for CTAGE9 Gene

No Data Available

Interacting Proteins for CTAGE9 Gene

Gene Ontology (GO) - Biological Process for CTAGE9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTAGE9 Gene

Transcripts for CTAGE9 Gene

mRNA/cDNA for CTAGE9 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTAGE9 Gene

CTAGE family, member 9:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTAGE9 Gene

No ASD Table

Relevant External Links for CTAGE9 Gene

GeneLoc Exon Structure for
CTAGE9
ECgene alternative splicing isoforms for
CTAGE9

Expression for CTAGE9 Gene

mRNA expression in normal human tissues for CTAGE9 Gene

mRNA differential expression in normal tissues according to GTEx for CTAGE9 Gene

This gene is overexpressed in Testis (x35.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CTAGE9 Gene



Protein tissue co-expression partners for CTAGE9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CTAGE9 Gene:

CTAGE9

SOURCE GeneReport for Unigene cluster for CTAGE9 Gene:

Hs.632613
genes like me logo Genes that share expression patterns with CTAGE9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CTAGE9 Gene

Orthologs for CTAGE9 Gene

This gene was present in the common ancestor of animals.

Orthologs for CTAGE9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC470576 34
  • 94.66 (n)
cow
(Bos Taurus)
Mammalia -- 35
  • 72 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Ctage5 35
  • 66 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 45 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 34 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 33 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 35
  • 30 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 31 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ctage5 35
  • 36 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Tango1 35
  • 9 (a)
OneToMany
Species where no ortholog for CTAGE9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CTAGE9 Gene

ENSEMBL:
Gene Tree for CTAGE9 (if available)
TreeFam:
Gene Tree for CTAGE9 (if available)

Paralogs for CTAGE9 Gene

(6) SIMAP similar genes for CTAGE9 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CTAGE9 Gene

genes like me logo Genes that share paralogs with CTAGE9: view

Variants for CTAGE9 Gene

Sequence variations from dbSNP and Humsavar for CTAGE9 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs113754296 -- 131,708,298(+) CCACA(A/G)CCTTT intron-variant, downstream-variant-500B
rs143146055 -- 131,712,232(+) TACTT(A/G)CTTTT intron-variant, upstream-variant-2KB
rs17090723 -- 131,712,552(+) GTTTT(C/T)AGTCC intron-variant, upstream-variant-2KB
rs17090727 -- 131,712,543(+) TTCCA(A/G)GAAGT intron-variant, upstream-variant-2KB
rs1731134 -- 131,710,309(+) CACTT(C/G)TCCTT intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CTAGE9 Gene

Variant ID Type Subtype PubMed ID
dgv3658e59 CNV duplication 20981092
dgv88n68 CNV loss 17160897
esv24430 CNV gain+loss 19812545
nsv1139874 CNV duplication 24896259
nsv1153899 CNV duplication 26484159
nsv7968 CNV loss 18304495
nsv821228 CNV duplication 20802225
nsv981185 CNV duplication 23825009

Variation tolerance for CTAGE9 Gene

Gene Damage Index Score: 5.44; 71.41% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CTAGE9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTAGE9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CTAGE9 Gene

Disorders for CTAGE9 Gene

Relevant External Links for CTAGE9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTAGE9

No disorders were found for CTAGE9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTAGE9 Gene

Publications for CTAGE9 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  2. cTAGE: a cutaneous T cell lymphoma associated antigen family with tumor-specific splicing. (PMID: 12839582) Usener D. … Eichmueller S. (J. Invest. Dermatol. 2003) 3 64
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 64
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CTAGE9 Gene

Sources for CTAGE9 Gene

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