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Aliases for CTAGE9 Gene

Aliases for CTAGE9 Gene

  • CTAGE Family Member 9 2 3 5
  • CTAGE Family, Member 9 2
  • Protein CTAGE-9 4

External Ids for CTAGE9 Gene

Previous GeneCards Identifiers for CTAGE9 Gene

  • GC06M132075
  • GC06M132030
  • GC07M143303

Summaries for CTAGE9 Gene

GeneCards Summary for CTAGE9 Gene

CTAGE9 (CTAGE Family Member 9) is a Protein Coding gene. An important paralog of this gene is CTAGE4.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTAGE9 Gene

Genomics for CTAGE9 Gene

Regulatory Elements for CTAGE9 Gene

Enhancers for CTAGE9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G132493 1.6 Ensembl ENCODE dbSUPER 10.4 -786.4 -786382 7.6 HDGF PKNOX1 AGO1 ARID4B SIN3A DMAP1 FEZF1 ZNF207 FOS PAF1 MOXD1 CTAGE9 SNORA33 STX7 ENPP1
GH06G131753 1.2 ENCODE dbSUPER 0.3 -44.3 -44268 2.9 FOXA2 ATF1 MLX ARID4B ZNF48 SLC30A9 FOS SP5 MXD4 NFYC ENPP1 GC06M131781 CTAGE9
GH06G131732 0.8 ENCODE dbSUPER 0.3 -22.6 -22603 1.5 ZFHX2 JUND POLR2A FOS ZNF384 EGR2 CTAGE9 GC06M131781
GH06G131764 1.1 ENCODE dbSUPER 0.2 -54.5 -54504 1.7 ELF3 PKNOX1 FOXA2 MLX ARID4B RAD21 RARA CREM MIXL1 THAP11 LOC100421775 GC06M131781 CTAGE9
GH06G131738 0.7 ENCODE dbSUPER 0.3 -28.3 -28259 1.4 GATA2 BHLHE40 FOS CTAGE9 GC06M131781
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTAGE9 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTAGE9 Gene

131,708,441 bp from pter
131,711,017 bp from pter
2,577 bases
Minus strand

Genomic View for CTAGE9 Gene

Genes around CTAGE9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTAGE9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTAGE9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTAGE9 Gene

Proteins for CTAGE9 Gene

  • Protein details for CTAGE9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    cTAGE family member 9
    Protein Accession:

    Protein attributes for CTAGE9 Gene

    777 amino acids
    Molecular mass:
    87953 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CTAGE9 Gene

Post-translational modifications for CTAGE9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CTAGE9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CTAGE9 Gene

Domains & Families for CTAGE9 Gene

Gene Families for CTAGE9 Gene

Protein Domains for CTAGE9 Gene


Suggested Antigen Peptide Sequences for CTAGE9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the cTAGE family.
  • Belongs to the cTAGE family.
genes like me logo Genes that share domains with CTAGE9: view

Function for CTAGE9 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTAGE9 Gene

Localization for CTAGE9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CTAGE9 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CTAGE9 gene
Compartment Confidence
nucleus 2
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1
cytosol 1

Gene Ontology (GO) - Cellular Components for CTAGE9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CTAGE9: view

Pathways & Interactions for CTAGE9 Gene

SuperPathways for CTAGE9 Gene

No Data Available

Interacting Proteins for CTAGE9 Gene

Gene Ontology (GO) - Biological Process for CTAGE9 Gene


No data available for Pathways by source and SIGNOR curated interactions for CTAGE9 Gene

Drugs & Compounds for CTAGE9 Gene

No Compound Related Data Available

Transcripts for CTAGE9 Gene

mRNA/cDNA for CTAGE9 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTAGE9 Gene

CTAGE family, member 9:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTAGE9 Gene

No ASD Table

Relevant External Links for CTAGE9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CTAGE9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTAGE9 Gene

mRNA differential expression in normal tissues according to GTEx for CTAGE9 Gene

This gene is overexpressed in Testis (x35.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CTAGE9 Gene

Protein tissue co-expression partners for CTAGE9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CTAGE9 Gene:


SOURCE GeneReport for Unigene cluster for CTAGE9 Gene:

genes like me logo Genes that share expression patterns with CTAGE9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTAGE9 Gene

Orthologs for CTAGE9 Gene

This gene was present in the common ancestor of animals.

Orthologs for CTAGE9 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia LOC470576 34
  • 94.66 (n)
(Bos Taurus)
Mammalia -- 35
  • 72 (a)
(Mus musculus)
Mammalia Ctage5 35
  • 66 (a)
(Canis familiaris)
Mammalia -- 35
  • 45 (a)
(Monodelphis domestica)
Mammalia -- 35
  • 34 (a)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 33 (a)
(Gallus gallus)
Aves -- 35
  • 30 (a)
(Anolis carolinensis)
Reptilia -- 35
  • 31 (a)
(Danio rerio)
Actinopterygii ctage5 35
  • 36 (a)
fruit fly
(Drosophila melanogaster)
Insecta Tango1 35
  • 9 (a)
Species where no ortholog for CTAGE9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CTAGE9 Gene

Gene Tree for CTAGE9 (if available)
Gene Tree for CTAGE9 (if available)

Paralogs for CTAGE9 Gene

(6) SIMAP similar genes for CTAGE9 Gene using alignment to 1 proteins: Pseudogenes for CTAGE9 Gene

genes like me logo Genes that share paralogs with CTAGE9: view

Variants for CTAGE9 Gene

Sequence variations from dbSNP and Humsavar for CTAGE9 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1004057491 -- 131,708,866(+) AGGTC(C/G)TCTTC intron-variant, reference, missense
rs1008409859 -- 131,712,330(+) GGCAG(A/C)ATTTG intron-variant, upstream-variant-2KB
rs1008462519 -- 131,711,335(+) ACACT(A/T)TTAAA intron-variant, upstream-variant-2KB
rs1024686606 -- 131,712,771(+) TTTTG(-/GT)TCCCA intron-variant, upstream-variant-2KB
rs1026620306 -- 131,712,548(+) AGAAG(C/T)TTTTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CTAGE9 Gene

Variant ID Type Subtype PubMed ID
dgv3658e59 CNV duplication 20981092
dgv88n68 CNV loss 17160897
esv24430 CNV gain+loss 19812545
nsv1139874 CNV duplication 24896259
nsv1153899 CNV duplication 26484159
nsv7968 CNV loss 18304495
nsv821228 CNV duplication 20802225
nsv981185 CNV duplication 23825009

Variation tolerance for CTAGE9 Gene

Gene Damage Index Score: 5.44; 71.41% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CTAGE9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CTAGE9 Gene

Disorders for CTAGE9 Gene

Relevant External Links for CTAGE9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CTAGE9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTAGE9 Gene

Publications for CTAGE9 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  2. cTAGE: a cutaneous T cell lymphoma associated antigen family with tumor-specific splicing. (PMID: 12839582) Usener D. … Eichmueller S. (J. Invest. Dermatol. 2003) 3 64
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 64
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CTAGE9 Gene

Sources for CTAGE9 Gene

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