CTAGE9 Gene
protein-coding GIFtS: 31
GCID: GC06M132030
|
|
CTAGE family, member 9
| |
Aliases
for CTAGE9 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| CTAGE Family, Member 91 2 | | Protein CTAGE-92 3 | | Cutaneous T-Cell Lymphoma-Associated Antigen 92 |
Export aliases for CTAGE9 gene to outside databasesPrevious GC identifers: GC06M132075 GC07M143303 |
Summaries
for CTAGE9 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for CTAGE9 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000006.11 NC_018917.1 NT_025741.15
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for CTAGE9
Other transcription factors
Search SABiosciences Chromatin IP Primers for CTAGE9
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CTAGE9 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6q23.2 Ensembl cytogenetic band: 6q23.2 HGNC cytogenetic band: 6q23.2CTAGE9 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M132030: view genomic region
(about GC identifiers)
Start:
|
132,029,581 bp from pter |
End:
|
132,032,206 bp from pter |
Size:
|
2,626 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 143,302,025-143,304,601 |
|
Proteins
for CTAGE9 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CTGE9_HUMAN, A4FU28 (See
protein sequence)Recommended Name: Cutaneous T-cell lymphoma-associated antigen 9 Size: 777 amino acids; 87953 Da
Subcellular location: Membrane; Single-pass membrane protein (Potential)Explore the universe of human proteins at neXtProt for CTAGE9: NX_A4FU28
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_A4FU28
CTAGE9 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001139131.1
ENSEMBL proteins: ENSP00000395587
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016021 | integral to membrane |
IEA | -- |
CTAGE9 for ontologies About GeneDecksing
CTAGE9 Antibody Products:
Assay Products for CTAGE9: |
Protein
Domains /
Families
for CTAGE9 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: A4FU28 UniProtKB/Swiss-Prot: CTGE9_HUMAN, A4FU28Similarity: Belongs to the cTAGE family |
Function
for CTAGE9 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CTAGE9
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CTAGE9
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: CTAGE9 (NM_001145659) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CTAGE9 | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CTAGE9 |
|
Pathways & Interactions
for CTAGE9 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CTAGE9
|
Drugs & Compounds
for CTAGE9 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for CTAGE9
Search CenterWatch for drugs/clinical trials and news about CTAGE9 / CTGE9
|
Transcripts
for CTAGE9 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for CTAGE9 gene: NM_001145659.1 Unigene Cluster for CTAGE9: CTAGE family, member 9 Hs.632613 [show with all ESTs]Unigene Representative Sequence: NM_0011456591 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000314099(uc011ece.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CTAGE9
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CTAGE9
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: CTAGE9 (NM_001145659) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CTAGE9 | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CTAGE9 |
Additional cDNA sequence: BC101322.1 7 DOTS entries: DT.97806985 DT.443326 DT.121321834 DT.121321850 DT.121037339 DT.121041512 DT.40284638
GeneLoc Exon Structure
|
Expression
for CTAGE9 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| CTAGE9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See CTAGE9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CTAGE9
SOURCE GeneReport for Unigene cluster: Hs.632613
SABiosciences Custom PCR Arrays for CTAGE9
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CTAGE9
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat CTAGE9 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CTAGE9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CTAGE9 |
Orthologs
for CTAGE9 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for CTAGE9 gene from 2/7 species (see all 7) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
zebrafish
(Danio rerio) |
Actinopterygii |
ctage56 |
CTAGE family, member 5 |
36(a) |
1 → many |
17(12908906-12936163) |
fruit fly
(Drosophila melanogaster) |
Insecta |
Tango16 |
Transport and Golgi organization 1 |
7(a) |
1 → many |
2L(6649388-6654574) |
ENSEMBL Gene Tree for CTAGE9 (if available)
TreeFam Gene Tree for CTAGE9 (if available) |
Paralogs
for CTAGE9 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for CTAGE9 gene
- CTAGE41 2 CTAGE15P CTAGE6P ENSG000002589412 CTAGE12 CTAGE52 MIA32 CTAGE82
7 SIMAP similar genes for CTAGE9 using alignment to 1 protein entry: CTGE9_HUMAN:CTAGE4 CTAGE8 CTAGE6P LOC389592 LOC441294 CTAGE5
CTAGE1
CTAGE9 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for CTAGE9
PGOHUM00000239603
|
Genomic Variants
for CTAGE9 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 5 variations for CTAGE9
5 CNVs: 69603 32838 94014 81590 94013 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CTAGE9 |
|
Disorders
/ Diseases
for CTAGE9 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
CTAGE9 for disorders About GeneDecksing
2  diseases for CTAGE9: About MalaCardscutaneous t cell lymphoma melanoma
Export disorders for CTAGE9 gene to outside databases
|
Publications
for CTAGE9 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for CTAGE9 gene integrated from 9 sources:
(articles sorted by number of sources associating them with CTAGE9) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)2 Mungall A.J.... Beck S. (2003)
- The DNA sequence of human chromosome 7. (PubMed id 12853948)1 Hillier L.W.... Wilson R.K. (2003)
- cTAGE: a cutaneous T cell lymphoma associated antigen family with tumor-specific splicing. (PubMed id 12839582)1 Usener D....Eichmuller S. (2003)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (2001)
- Toward a complete human genome sequence. (PubMed id 9847074)1 Wilson R. (1998)
|
External Searches for CTAGE9 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing CTAGE9 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CTAGE9 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CTAGE9 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for CTAGE9 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for CTAGE9 gene:
Search GeneIP for patents involving CTAGE9
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CTAGE9 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for CTAGE9 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CTAGE9 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CTAGE9 | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for CTAGE9 | | OriGene 3'-UTR Clone for CTAGE9 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CTAGE9 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CTAGE9 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for CTAGE9 | | OriGene Custom Protein Services for CTAGE9 | | | OriGene Custom Immunoassay Development | | |
| |
 |
 |
| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CTAGE9 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CTAGE9 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CTAGE9 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CTAGE9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CTAGE9 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CTAGE9 |
| |
 |  |  |  | |
| | | | Search Tocris compounds for CTAGE9 |
| |  |  |  |  | | | | |
 |
 |
 |
 | | | CTAGE9 Proteins, Antibodies, CLIAs, and ELISAs |
| | | |  |  |  | | | | Search ThermoFisher Antibodies for CTAGE9 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CTAGE9 |
|
|
|
|
