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Aliases for CTAGE7P Gene

Aliases for CTAGE7P Gene

  • CTAGE Family Member 7, Pseudogene 2 3 5
  • Meningioma Expressed Antigen 6 (Coiled-Coil Proline-Rich) Pseudogene 2 3
  • CTAGE Family Pseudogene 2 3
  • CTAGE Family, Member 7, Pseudogene 2
  • CTAGE Family, Member 5 Pseudogene 3
  • CTAGE Family, Member 7 2
  • BA500G10.2 3
  • RcCTAGE5 3
  • CTAGE7 3
  • CTAGEP 3

External Ids for CTAGE7P Gene

Previous HGNC Symbols for CTAGE7P Gene

  • CTAGEP
  • CTAGE7

Previous GeneCards Identifiers for CTAGE7P Gene

  • GC10P131905
  • GC10P125484

Summaries for CTAGE7P Gene

GeneCards Summary for CTAGE7P Gene

CTAGE7P (CTAGE Family Member 7, Pseudogene) is a Pseudogene.

Additional gene information for CTAGE7P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTAGE7P Gene

Genomics for CTAGE7P Gene

GeneHancer (GH) Regulatory Elements for CTAGE7P Gene

Promoters and enhancers for CTAGE7P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I130105 Enhancer 0.3 ENCODE 550.8 -0.1 -77 0.2 PRDM10 CTAGE7P ENSG00000277218 PPIAP32 GLRX3 C10orf143
GH10I129949 Promoter/Enhancer 2.9 UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.6 -148.6 -148576 16.2 PKNOX1 FOXA2 MZF1 SIN3A ZNF335 ZNF213 RCOR1 ZNF391 ZNF202 ZBTB11 EBF3 CTAGE7P GC10P129955
GH10I130189 Enhancer 1.1 Ensembl ENCODE 22.8 +84.4 84442 1.7 HDGF ARNT SIN3A ZNF2 ZNF48 GLIS2 ZNF207 ZNF143 RUNX3 PAF1 CTAGE7P GLRX3 PIR61521
GH10I129605 Enhancer 1.7 VISTA UCNEbase Ensembl ENCODE 13.2 -499.7 -499704 1.5 FEZF1 ZNF2 IRF4 GLIS2 ZNF213 ZNF143 ATF7 KLF7 RUNX3 JUNB MGMT CTAGE7P GC10P129600 GC10M129701
GH10I130108 Promoter/Enhancer 1.6 Ensembl ENCODE 13.6 +4.6 4633 3.5 HDGF PKNOX1 CLOCK ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 C10orf143 LOC102724883 CTAGE7P GLRX3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTAGE7P on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTAGE7P Gene

Genomic Locations for CTAGE7P Gene
chr10:130,106,009-130,108,838
(GRCh38/hg38)
Size:
2,830 bases
Orientation:
Plus strand
chr10:131,904,029-131,907,098
(GRCh37/hg19)

Genomic View for CTAGE7P Gene

Genes around CTAGE7P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTAGE7P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTAGE7P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTAGE7P Gene

Proteins for CTAGE7P Gene

Post-translational modifications for CTAGE7P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTAGE7P Gene

Domains & Families for CTAGE7P Gene

Gene Families for CTAGE7P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CTAGE7P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTAGE7P Gene

Function for CTAGE7P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTAGE7P Gene

Localization for CTAGE7P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTAGE7P Gene

Pathways & Interactions for CTAGE7P Gene

SuperPathways for CTAGE7P Gene

No Data Available

Interacting Proteins for CTAGE7P Gene

Gene Ontology (GO) - Biological Process for CTAGE7P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTAGE7P Gene

Drugs & Compounds for CTAGE7P Gene

No Compound Related Data Available

Transcripts for CTAGE7P Gene

mRNA/cDNA for CTAGE7P Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTAGE7P Gene

CTAGE family, member 7, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CTAGE7P Gene

No ASD Table

Relevant External Links for CTAGE7P Gene

GeneLoc Exon Structure for
CTAGE7P
ECgene alternative splicing isoforms for
CTAGE7P

Expression for CTAGE7P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTAGE7P Gene

mRNA differential expression in normal tissues according to GTEx for CTAGE7P Gene

This gene is overexpressed in Testis (x8.3).

NURSA nuclear receptor signaling pathways regulating expression of CTAGE7P Gene:

CTAGE7P

SOURCE GeneReport for Unigene cluster for CTAGE7P Gene:

Hs.620802
genes like me logo Genes that share expression patterns with CTAGE7P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTAGE7P Gene

Orthologs for CTAGE7P Gene

Evolution for CTAGE7P Gene

ENSEMBL:
Gene Tree for CTAGE7P (if available)
TreeFam:
Gene Tree for CTAGE7P (if available)

No data available for Orthologs for CTAGE7P Gene

Paralogs for CTAGE7P Gene

No data available for Paralogs for CTAGE7P Gene

Variants for CTAGE7P Gene

Sequence variations from dbSNP and Humsavar for CTAGE7P Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1002679395 -- 130,105,914(+) C/T upstream_transcript_variant
rs1003933600 -- 130,105,036(+) C/A upstream_transcript_variant
rs1005590040 -- 130,108,947(+) A/C downstream_transcript_variant
rs1005651376 -- 130,105,362(+) A/T upstream_transcript_variant
rs1006020582 -- 130,109,143(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CTAGE7P Gene

Variant ID Type Subtype PubMed ID
nsv1048253 CNV gain 25217958
nsv832024 CNV loss 17160897
nsv948227 CNV duplication 23825009

Additional Variant Information for CTAGE7P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTAGE7P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTAGE7P Gene

Disorders for CTAGE7P Gene

Additional Disease Information for CTAGE7P

No disorders were found for CTAGE7P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTAGE7P Gene

Publications for CTAGE7P Gene

  1. Emergence of young human genes after a burst of retroposition in primates. (PMID: 16201836) Marques AC … Kaessmann H (PLoS biology 2005) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CTAGE7P Gene

Sources for CTAGE7P Gene

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