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Aliases for CTAGE6 Gene

Aliases for CTAGE6 Gene

  • CTAGE Family, Member 6 2 3
  • CTAGE Family, Member 6, Pseudogene 2 3
  • Protein CTAGE-6 3 4
  • CTAGE6P 3 4
  • Cutaneous T-Cell Lymphoma-Associated Antigen 6 3
  • Putative Protein CTAGE-6 3
  • CTAGE Family Member 6 3

External Ids for CTAGE6 Gene

Previous HGNC Symbols for CTAGE6 Gene

  • CTAGE6P

Previous GeneCards Identifiers for CTAGE6 Gene

  • GC07M142844
  • GC07M142889
  • GC07M143083
  • GC07M143453
  • GC07M143455
  • GC07M143459
  • GC07M143461

Summaries for CTAGE6 Gene

GeneCards Summary for CTAGE6 Gene

CTAGE6 (CTAGE Family, Member 6) is a Protein Coding gene. An important paralog of this gene is CTAGE9.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTAGE6 Gene

Genomics for CTAGE6 Gene

Regulatory Elements for CTAGE6 Gene

Genomic Location for CTAGE6 Gene

Start:
143,755,089 bp from pter
End:
143,757,750 bp from pter
Size:
2,662 bases
Orientation:
Minus strand

Genomic View for CTAGE6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CTAGE6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTAGE6 Gene

Proteins for CTAGE6 Gene

  • Protein details for CTAGE6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86UF2-CTGE6_HUMAN
    Recommended name:
    cTAGE family member 6
    Protein Accession:
    Q86UF2
    Secondary Accessions:
    • A4FU29
    • Q3ZCM5

    Protein attributes for CTAGE6 Gene

    Size:
    777 amino acids
    Molecular mass:
    87900 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BC043153; Type=Frameshift; Positions=63; Evidence={ECO:0000305};

neXtProt entry for CTAGE6 Gene

Proteomics data for CTAGE6 Gene at MOPED

Post-translational modifications for CTAGE6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CTAGE6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CTAGE6 Gene

Domains for CTAGE6 Gene

Protein Domains for CTAGE6 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q86UF2

UniProtKB/Swiss-Prot:

CTGE6_HUMAN :
  • Q86UF2
Family:
  • Belongs to the cTAGE family.
genes like me logo Genes that share domains with CTAGE6: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for CTAGE6 Gene

Function for CTAGE6 Gene

Gene Ontology (GO) - Molecular Function for CTAGE6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding --
genes like me logo Genes that share ontologies with CTAGE6: view

Phenotypes for CTAGE6 Gene

GenomeRNAi human phenotypes for CTAGE6:
genes like me logo Genes that share phenotypes with CTAGE6: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CTAGE6 Gene

Localization for CTAGE6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CTAGE6 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for CTAGE6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CTAGE6: view

No data available for Subcellular locations from COMPARTMENTS for CTAGE6 Gene

Pathways for CTAGE6 Gene

SuperPathways for CTAGE6 Gene

No Data Available

Interacting Proteins for CTAGE6 Gene

Gene Ontology (GO) - Biological Process for CTAGE6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with CTAGE6: view

No data available for Pathways by source for CTAGE6 Gene

Transcripts for CTAGE6 Gene

mRNA/cDNA for CTAGE6 Gene

(4) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTAGE6 Gene

CTAGE family, member 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CTAGE6 Gene

No ASD Table

Relevant External Links for CTAGE6 Gene

GeneLoc Exon Structure for
CTAGE6
ECgene alternative splicing isoforms for
CTAGE6

Expression for CTAGE6 Gene

mRNA expression in normal human tissues for CTAGE6 Gene

mRNA differential expression in normal tissues according to GTEx for CTAGE6 Gene

This gene is overexpressed in Testis (39.5).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for CTAGE6 Gene

SOURCE GeneReport for Unigene cluster for CTAGE6 Gene Hs.676333

genes like me logo Genes that share expressions with CTAGE6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CTAGE6 Gene

Orthologs for CTAGE6 Gene

This gene was present in the common ancestor of animals.

Orthologs for CTAGE6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC470576 35
  • 94.36 (n)
  • 88.89 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 71 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 44 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Ctage5 36
  • 65 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 34 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 33 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 30 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 31 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ctage5 36
  • 35 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Tango1 36
  • 9 (a)
OneToMany
Species with no ortholog for CTAGE6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CTAGE6 Gene

ENSEMBL:
Gene Tree for CTAGE6 (if available)
TreeFam:
Gene Tree for CTAGE6 (if available)

Paralogs for CTAGE6 Gene

Paralogs for CTAGE6 Gene

Selected SIMAP similar genes for CTAGE6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CTAGE6: view

Variants for CTAGE6 Gene

Sequence variations from dbSNP and Humsavar for CTAGE6 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs2966641 -- 143,754,618(+) TTTTT(C/T)CCCCC downstream-variant-500B
rs17855659 -- 143,756,425(+) TTCTT(C/T)CTCTA missense, reference
rs57261375 -- 143,756,099(+) CCATT(C/T)GGGGC synonymous-codon, reference
rs62486288 -- 143,756,685(+) AAACA(C/T)TTAAC reference, missense
rs111933540 -- 143,759,478(+) TGGCA(A/C)ATGTG upstream-variant-2KB

Relevant External Links for CTAGE6 Gene

HapMap Linkage Disequilibrium report
CTAGE6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CTAGE6 Gene

Disorders for CTAGE6 Gene

No disorders were found for CTAGE6 Gene.

No data available for UniProtKB/Swiss-Prot for CTAGE6 Gene

Publications for CTAGE6 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4

Products for CTAGE6 Gene

Sources for CTAGE6 Gene

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