Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CTAGE6 Gene

Aliases for CTAGE6 Gene

  • CTAGE Family Member 6 2 3 5
  • CTAGE Family, Member 6, Pseudogene 2 3
  • Protein CTAGE-6 3 4
  • CTAGE6P 3 4
  • Cutaneous T-Cell Lymphoma-Associated Antigen 6 3
  • Putative Protein CTAGE-6 3
  • CTAGE Family, Member 6 2

External Ids for CTAGE6 Gene

Previous HGNC Symbols for CTAGE6 Gene


Previous GeneCards Identifiers for CTAGE6 Gene

  • GC07M142844
  • GC07M142889
  • GC07M143083
  • GC07M143453
  • GC07M143455
  • GC07M143459
  • GC07M143461

Summaries for CTAGE6 Gene

GeneCards Summary for CTAGE6 Gene

CTAGE6 (CTAGE Family Member 6) is a Protein Coding gene. GO annotations related to this gene include nucleotide binding. An important paralog of this gene is CTAGE15.

Additional gene information for CTAGE6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTAGE6 Gene

Genomics for CTAGE6 Gene

Regulatory Elements for CTAGE6 Gene

Enhancers for CTAGE6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H143490 1.2 Ensembl ENCODE 7.4 +265.3 265328 3 HDAC1 PKNOX1 ATF1 ZBTB40 RAD21 TCF12 GATA2 ATF7 FOS CEBPB CTAGE6 EPHA1 EPHA1-AS1 OR2R1P LOC105375547
GH07H143519 0.7 Ensembl ENCODE 4.8 +238.0 238008 0.8 ZFHX2 POLR2A TAS2R41 FAM131B ARHGEF35 CTAGE6 OR10AC1 GC07M143535
GH07H143765 0.2 Ensembl 0.4 -8.0 -7952 0.2 CTAGE6 PIR60571
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTAGE6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTAGE6 Gene

Genomic Locations for CTAGE6 Gene
2,662 bases
Minus strand

Genomic View for CTAGE6 Gene

Genes around CTAGE6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTAGE6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTAGE6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTAGE6 Gene

Proteins for CTAGE6 Gene

  • Protein details for CTAGE6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    cTAGE family member 6
    Protein Accession:
    Secondary Accessions:
    • A4FU29
    • Q3ZCM5

    Protein attributes for CTAGE6 Gene

    777 amino acids
    Molecular mass:
    87900 Da
    Quaternary structure:
    No Data Available
    • Sequence=BC043153; Type=Frameshift; Positions=63; Evidence={ECO:0000305};

neXtProt entry for CTAGE6 Gene

Post-translational modifications for CTAGE6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CTAGE6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CTAGE6 Gene

Domains & Families for CTAGE6 Gene

Gene Families for CTAGE6 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for CTAGE6 Gene


Suggested Antigen Peptide Sequences for CTAGE6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the cTAGE family.
  • Belongs to the cTAGE family.
genes like me logo Genes that share domains with CTAGE6: view

Function for CTAGE6 Gene

genes like me logo Genes that share phenotypes with CTAGE6: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTAGE6 Gene

Localization for CTAGE6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CTAGE6 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for CTAGE6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CTAGE6: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CTAGE6 Gene

Pathways & Interactions for CTAGE6 Gene

SuperPathways for CTAGE6 Gene

No Data Available

Interacting Proteins for CTAGE6 Gene

Gene Ontology (GO) - Biological Process for CTAGE6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with CTAGE6: view

No data available for Pathways by source and SIGNOR curated interactions for CTAGE6 Gene

Drugs & Compounds for CTAGE6 Gene

No Compound Related Data Available

Transcripts for CTAGE6 Gene

mRNA/cDNA for CTAGE6 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTAGE6 Gene

CTAGE family, member 6:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTAGE6 Gene

No ASD Table

Relevant External Links for CTAGE6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CTAGE6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTAGE6 Gene

mRNA differential expression in normal tissues according to GTEx for CTAGE6 Gene

This gene is overexpressed in Testis (x39.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CTAGE6 Gene

NURSA nuclear receptor signaling pathways regulating expression of CTAGE6 Gene:


SOURCE GeneReport for Unigene cluster for CTAGE6 Gene:

genes like me logo Genes that share expression patterns with CTAGE6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTAGE6 Gene

Orthologs for CTAGE6 Gene

This gene was present in the common ancestor of animals.

Orthologs for CTAGE6 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia LOC470576 33
  • 94.36 (n)
(Bos Taurus)
Mammalia -- 34
  • 71 (a)
(Mus musculus)
Mammalia Ctage5 34
  • 65 (a)
(Canis familiaris)
Mammalia -- 34
  • 44 (a)
(Monodelphis domestica)
Mammalia -- 34
  • 34 (a)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 33 (a)
(Gallus gallus)
Aves -- 34
  • 30 (a)
(Anolis carolinensis)
Reptilia -- 34
  • 31 (a)
(Danio rerio)
Actinopterygii ctage5 34
  • 35 (a)
fruit fly
(Drosophila melanogaster)
Insecta Tango1 34
  • 9 (a)
Species where no ortholog for CTAGE6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CTAGE6 Gene

Gene Tree for CTAGE6 (if available)
Gene Tree for CTAGE6 (if available)

Paralogs for CTAGE6 Gene

Paralogs for CTAGE6 Gene

(7) SIMAP similar genes for CTAGE6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CTAGE6: view

Variants for CTAGE6 Gene

Sequence variations from dbSNP and Humsavar for CTAGE6 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1004706644 -- 143,759,725(+) TAAGT(A/C)TCATG upstream-variant-2KB
rs1004961281 -- 143,759,351(+) CAATT(C/T)CCAAC upstream-variant-2KB
rs1005400541 -- 143,758,014(+) TTTGA(C/T)CATTA upstream-variant-2KB
rs1014115533 -- 143,756,973(+) CTTCT(C/T)GCTGA reference, missense
rs1019109551 -- 143,758,060(+) TGATA(C/T)ACATA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CTAGE6 Gene

Variant ID Type Subtype PubMed ID
nsv970953 CNV duplication 23825009
nsv8227 CNV gain+loss 18304495
nsv7408 OTHER inversion 18451855
nsv608687 CNV gain 21841781
nsv608686 CNV loss 21841781
nsv608684 CNV loss 21841781
nsv608682 CNV gain 21841781
nsv522225 CNV gain 19592680
nsv514455 CNV gain+loss 21397061
nsv471645 CNV gain+loss 15918152
esv2759570 CNV gain+loss 17122850
esv2422489 CNV duplication 17116639
dgv6718n100 CNV gain 25217958
dgv6717n100 CNV gain+loss 25217958
dgv6716n100 CNV gain 25217958
dgv6715n100 CNV gain+loss 25217958
dgv6714n100 CNV gain+loss 25217958
dgv6713n100 CNV gain 25217958
dgv6712n100 CNV loss 25217958
dgv6711n100 CNV gain 25217958
dgv6710n100 CNV loss 25217958
dgv6709n100 CNV loss 25217958
dgv6708n100 CNV loss 25217958
dgv6707n100 CNV loss 25217958
dgv6706n100 CNV loss 25217958
dgv6702n100 CNV gain 25217958
dgv6701n100 CNV gain 25217958
dgv6700n100 CNV gain 25217958
dgv251n111 CNV duplication 26073780
dgv250n111 CNV duplication 26073780
dgv12n29 CNV gain+loss 16826518
nsv469570 CNV gain+loss 16826518
nsv442210 CNV gain 18776908
nsv428188 CNV gain+loss 18775914
nsv17 OTHER inversion 15895083
nsv16 OTHER inversion 15895083
nsv1161646 CNV duplication 26073780
nsv1161631 CNV duplication 26073780
nsv1149977 CNV duplication 26484159
nsv1140255 OTHER inversion 24896259
nsv1034865 CNV gain 25217958
nsv1033465 CNV gain 25217958
nsv1029557 CNV gain+loss 25217958
nsv1024360 CNV gain+loss 25217958
nsv1022655 CNV gain 25217958
nsv1017272 CNV gain 25217958
nsv1017213 CNV gain+loss 25217958
nsv1016831 CNV gain 25217958
nsv1015899 CNV loss 25217958
esv3891222 CNV gain+loss 25118596
esv3891220 CNV loss 25118596
esv3584556 CNV gain 24956385
esv3425779 CNV duplication 20981092
esv3364531 CNV duplication 20981092
esv29816 CNV gain+loss 19812545
esv2761375 CNV gain 21179565
esv2761113 CNV gain+loss 21179565

Variation tolerance for CTAGE6 Gene

Gene Damage Index Score: 2.44; 43.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CTAGE6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CTAGE6 Gene

Disorders for CTAGE6 Gene

Relevant External Links for CTAGE6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CTAGE6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTAGE6 Gene

Publications for CTAGE6 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 4 60

Products for CTAGE6 Gene

Sources for CTAGE6 Gene

Loading form....