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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CTAGE3P Gene

pseudogene   GIFtS: 22
GCID: GC13M052483

CTAGE family, member 3, pseudogene

(Previous names: CTAGE family, member 3 )
(Previous symbol: CTAGE3)
 Explore 2 diseases affiliated with
CTAGE3P via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for CTAGE3P    

Aliases
for CTAGE3P gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
CTAGE Family, Member 3, Pseudogene1 2
CTAGE31 2 3
CTAGE-32
CTAGE Family, Member 31
CTAGE-32
Protein CTAGE-33

External Ids:    HGNC: 243481   Entrez Gene: 2201122   Ensembl: ENSG000002328727   OMIM: 6088575   UniProtKB: Q8IX953   

Export aliases for CTAGE3P gene to outside databases


Summaries
for CTAGE3P gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
UniProtKB/Swiss-Prot: CTGE3_HUMAN, Q8IX95
Function: Tumor-associated antigen




Genomic Views
for CTAGE3P gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000013.10  NC_018924.1  NT_024524.14  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for CTAGE3P
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CTAGE3P


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q14.3   Ensembl cytogenetic band:  13q14.3   HGNC cytogenetic band: 13q14.2

CTAGE3P Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CTAGE3P gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13M052483:  view genomic region     (about GC identifiers)

Start:
 52,481,956 bp from pter      End:
 52,484,757 bp from pter
Size:
 2,802 bases      Orientation:
 minus strand

Proteins
for CTAGE3P gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: CTGE3_HUMAN, Q8IX95 (See protein sequence)
Recommended Name: Putative cutaneous T-cell lymphoma-associated antigen 3  
Size: 158 amino acids; 18015 Da
Miscellaneous: Tumor-associated antigen found in several cutaneous T-cell lymphoma (CTCL). Expressed in 4 of 11 Mycosis
fungoides tissues and in a T-zone lymphoma
Caution: Could be the product of a pseudogene

Explore the universe of human proteins at neXtProt for CTAGE3P: NX_Q8IX95

CTAGE3P Protein expression data from MOPED and PaxDb: --

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005575cellular_component ND--


CTAGE3P for ontologies           About GeneDecksing



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Protein Domains /
Families
for CTAGE3P gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: Q8IX95

UniProtKB/Swiss-Prot: CTGE3_HUMAN, Q8IX95
Similarity: Belongs to the cTAGE family


Function
for CTAGE3P gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section
Function Summary:

     UniProtKB/Swiss-Prot: CTGE3_HUMAN, Q8IX95
Function: Tumor-associated antigen

miRNA
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Gene Editing
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Clone
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In Situ Assay
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Pathways & Interactions
for CTAGE3P gene

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CTAGE3P

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0008150biological_process ND--


CTAGE3P for ontologies           About GeneDecksing



Drugs & Compounds
for CTAGE3P gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
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Search CenterWatch for drugs/clinical trials and news about CTAGE3P 

Transcripts
for CTAGE3P gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section
REFSEQ mRNAs for CTAGE3P gene: 
NM_172237.1  

Unigene Cluster for CTAGE3P:

CTAGE family, member 3, pseudogene
Hs.623891
Unigene Representative Sequence: AF338231
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000454280

miRNA
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Inhib. RNA
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Clone
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Primer
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Additional cDNA sequence: AF338231.1 

1 DOTS entry:

DT.99999657 

GeneLoc Exon Structure


Expression
for CTAGE3P gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CTAGE3P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)
About this image

CTAGE3P expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
Stem Cell Differentiation: 1 LifeMap Cell 
NameCategory
Trophoblast-like cells (Generation of tropho...)
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization

SOURCE GeneReport for Unigene cluster: Hs.623891

UniProtKB/Swiss-Prot: CTGE3_HUMAN, Q8IX95
Tissue specificity: Expressed in normal tissues including colon, mammary gland, ovary, placenta, stomach and testis, as
well as several fetal tissues

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In Situ
Assay Products: 
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Orthologs
for CTAGE3P gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
   --

ENSEMBL Gene Tree for CTAGE3P (if available)
TreeFam Gene Tree for CTAGE3P (if available) 

Paralogs
for CTAGE3P gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

Genomic Variants
for CTAGE3P gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
SABiosciences Cancer Mutation PCR Assays
Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CTAGE3P
DNA2.0 Custom Variant and Variant Library Synthesis for CTAGE3P

Disorders / Diseases
for CTAGE3P gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
CTAGE3P for disorders           About GeneDecksing

OMIM gene information: 608857    OMIM disorders: --

2 diseases for CTAGE3P:    About MalaCards
mycosis fungoides    cutaneous t cell lymphoma


Export disorders for CTAGE3P gene to outside databases

Publications
for CTAGE3P gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for CTAGE3P gene integrated from 9 sources:
(articles sorted by number of sources associating them with CTAGE3P)		    Utopia: connect your pdf to the dynamic
world of online information

  1. cTAGE: a cutaneous T cell lymphoma associated antigen family with tumor-specific splicing. (PubMed id 12839582)1, 2, 3 Usener D....Eichmuller S. (2003)
  2. Serological detection of cutaneous T-cell lymphoma-associated antigens. (PubMed id 11149944)1, 3 Eichmueller S....Schadendorf D. (2001)

External Searches for CTAGE3P gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing CTAGE3P gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 220112 HGNC: 24348 Ensembl:ENSG00000232872 euGenes: HUgn220112 ECgene: CTAGE3P
H-InvDB: CTAGE3P

Other Databases showing CTAGE3P gene

(According to HUGE)
About This Section
   --

Specialized Databases showing CTAGE3P gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for CTAGE3P Pharmacogenomics, SNPs, Pathways

Intellectual Property
for CTAGE3P gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for CTAGE3P gene:
Search GeneIP for patents involving CTAGE3P

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



Products
for CTAGE3P gene

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About This Section

 
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