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Aliases for CTAGE15 Gene

Aliases for CTAGE15 Gene

  • CTAGE Family Member 15 2 3 5
  • CTAGE Family, Member 15, Pseudogene 2 3
  • Protein CTAGE-15 3 4
  • CTAGE15P 3 4
  • CTAGE Family, Member 15 2
  • CTAGE-15 3

External Ids for CTAGE15 Gene

Previous HGNC Symbols for CTAGE15 Gene

  • CTAGE15P

Previous GeneCards Identifiers for CTAGE15 Gene

  • GC07P143294
  • GC07P143301
  • GC07P143315

Summaries for CTAGE15 Gene

GeneCards Summary for CTAGE15 Gene

CTAGE15 (CTAGE Family Member 15) is a Protein Coding gene. An important paralog of this gene is CTAGE6.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTAGE15 Gene

Genomics for CTAGE15 Gene

Regulatory Elements for CTAGE15 Gene

Enhancers for CTAGE15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F143563 0.6 Ensembl 0.4 -8.3 -8349 0.8 BCOR CTCF JUN RAD21 YY1 FOSL1 ZNF316 CTBP1 GATA3 FOXK2 CTAGE15 PAICSP5
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CTAGE15 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTAGE15 Gene

Chromosome:
7
Start:
143,571,801 bp from pter
End:
143,574,387 bp from pter
Size:
2,587 bases
Orientation:
Plus strand

Genomic View for CTAGE15 Gene

Genes around CTAGE15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTAGE15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTAGE15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTAGE15 Gene

Proteins for CTAGE15 Gene

  • Protein details for CTAGE15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A4D2H0-CTGEF_HUMAN
    Recommended name:
    cTAGE family member 15
    Protein Accession:
    A4D2H0
    Secondary Accessions:
    • A6H8Z8

    Protein attributes for CTAGE15 Gene

    Size:
    777 amino acids
    Molecular mass:
    87868 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CTAGE15 Gene

Post-translational modifications for CTAGE15 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CTAGE15 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CTAGE15 Gene

Domains & Families for CTAGE15 Gene

Gene Families for CTAGE15 Gene

Protein Domains for CTAGE15 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A4D2H0

UniProtKB/Swiss-Prot:

CTGEF_HUMAN :
  • Belongs to the cTAGE family.
Family:
  • Belongs to the cTAGE family.
genes like me logo Genes that share domains with CTAGE15: view

No data available for Suggested Antigen Peptide Sequences for CTAGE15 Gene

Function for CTAGE15 Gene

genes like me logo Genes that share phenotypes with CTAGE15: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTAGE15 Gene

Localization for CTAGE15 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CTAGE15 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for CTAGE15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CTAGE15: view

No data available for Subcellular locations from COMPARTMENTS for CTAGE15 Gene

Pathways & Interactions for CTAGE15 Gene

SuperPathways for CTAGE15 Gene

No Data Available

Interacting Proteins for CTAGE15 Gene

Gene Ontology (GO) - Biological Process for CTAGE15 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTAGE15 Gene

Transcripts for CTAGE15 Gene

mRNA/cDNA for CTAGE15 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTAGE15 Gene

CTAGE family, member 15:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTAGE15 Gene

No ASD Table

Relevant External Links for CTAGE15 Gene

GeneLoc Exon Structure for
CTAGE15
ECgene alternative splicing isoforms for
CTAGE15

Expression for CTAGE15 Gene

mRNA expression in normal human tissues for CTAGE15 Gene

mRNA differential expression in normal tissues according to GTEx for CTAGE15 Gene

This gene is overexpressed in Testis (x12.1).

NURSA nuclear receptor signaling pathways regulating expression of CTAGE15 Gene:

CTAGE15

SOURCE GeneReport for Unigene cluster for CTAGE15 Gene:

Hs.450233
genes like me logo Genes that share expression patterns with CTAGE15: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CTAGE15 Gene

Orthologs for CTAGE15 Gene

This gene was present in the common ancestor of animals.

Orthologs for CTAGE15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC470576 34
  • 94.44 (n)
cow
(Bos Taurus)
Mammalia -- 35
  • 71 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Ctage5 35
  • 65 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 45 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 34 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 33 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 35
  • 30 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 31 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ctage5 35
  • 35 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Tango1 35
  • 9 (a)
OneToMany
Species where no ortholog for CTAGE15 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CTAGE15 Gene

ENSEMBL:
Gene Tree for CTAGE15 (if available)
TreeFam:
Gene Tree for CTAGE15 (if available)

Paralogs for CTAGE15 Gene

(6) SIMAP similar genes for CTAGE15 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CTAGE15 Gene

genes like me logo Genes that share paralogs with CTAGE15: view

Variants for CTAGE15 Gene

Sequence variations from dbSNP and Humsavar for CTAGE15 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs111236742 -- 143,571,103(+) TCTAA(A/T)ATAAA upstream-variant-2KB
rs111582233 -- 143,570,666(+) AGATA(A/T)TCCAG upstream-variant-2KB
rs112032278 -- 143,570,350(+) GTAAA(A/C)AACTG upstream-variant-2KB
rs112716988 -- 143,574,315(+) CTTTT(G/T)CTCAA utr-variant-3-prime
rs139967892 -- 143,571,434(+) GAAAA(C/T)TACCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CTAGE15 Gene

Variant ID Type Subtype PubMed ID
dgv12n29 CNV gain+loss 16826518
dgv248n111 CNV duplication 26073780
dgv249n111 CNV duplication 26073780
dgv3963e59 CNV duplication 20981092
dgv6699n100 CNV gain 25217958
dgv6700n100 CNV gain 25217958
dgv6701n100 CNV gain 25217958
dgv6702n100 CNV gain 25217958
dgv6703n100 CNV loss 25217958
dgv6704n100 CNV loss 25217958
dgv6705n100 CNV gain+loss 25217958
dgv6706n100 CNV loss 25217958
dgv6707n100 CNV loss 25217958
esv1007224 CNV gain 20482838
esv2422489 CNV duplication 17116639
esv2759570 CNV gain+loss 17122850
esv2761113 CNV gain+loss 21179565
esv2761375 CNV gain 21179565
esv29816 CNV gain+loss 19812545
esv3584556 CNV gain 24956385
esv3891221 CNV loss 25118596
nsv1020659 CNV gain+loss 25217958
nsv1024360 CNV gain+loss 25217958
nsv1029557 CNV gain+loss 25217958
nsv1124981 CNV duplication 24896259
nsv1151212 CNV duplication 26484159
nsv1161631 CNV duplication 26073780
nsv428188 CNV gain+loss 18775914
nsv442210 CNV gain 18776908
nsv514455 CNV gain+loss 21397061
nsv608682 CNV gain 21841781
nsv608683 CNV loss 21841781
nsv608684 CNV loss 21841781
nsv7408 OTHER inversion 18451855
nsv8227 CNV gain+loss 18304495
nsv970952 CNV duplication 23825009

Variation tolerance for CTAGE15 Gene

Gene Damage Index Score: 7.62; 82.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CTAGE15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTAGE15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CTAGE15 Gene

Disorders for CTAGE15 Gene

Relevant External Links for CTAGE15

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTAGE15

No disorders were found for CTAGE15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTAGE15 Gene

Publications for CTAGE15 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 4 64
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CTAGE15 Gene

Sources for CTAGE15 Gene

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