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Aliases for CTAGE11P Gene

Aliases for CTAGE11P Gene

  • CTAGE Family Member 11, Pseudogene 2 3 5
  • CTAGE Family, Member 11, Pseudogene 2

External Ids for CTAGE11P Gene

Previous GeneCards Identifiers for CTAGE11P Gene

  • GC13M075813

Summaries for CTAGE11P Gene

GeneCards Summary for CTAGE11P Gene

CTAGE11P (CTAGE Family Member 11, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTAGE11P Gene

Genomics for CTAGE11P Gene

Regulatory Elements for CTAGE11P Gene

Enhancers for CTAGE11P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F075479 0.7 ENCODE 9.8 -240.9 -240894 4.0 HDGF ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF416 ZNF143 ZNF207 LINC00347 UCHL3 COMMD6 CTAGE11P TBC1D4 LMO7-AS1 LINC01078
GH13F075250 0.5 ENCODE 9.4 -10.7 -10694 1.1 JUND FOS CTAGE11P LINC01078 TBC1D4
GH13F075226 1.2 Ensembl ENCODE 0.4 +13.6 13564 1.2 CTCF JUND L3MBTL2 POLR2A NRF1 TEAD4 FOS MAFK RAD21 MGA CTAGE11P SSR1P2
GH13F075223 1 ENCODE 0.3 +15.8 15843 2.4 PKNOX1 MTA2 JUNB RAD21 YY1 ATF3 POLR2A SMARCA4 CTAGE11P SSR1P2
GH13F075219 0.7 Ensembl ENCODE 0.3 +20.5 20481 0.6 CTCF RAD21 ZNF101 CBX5 ZNF143 SMC3 ZNF391 ZNF654 NRF1 ZFP37 CTAGE11P SSR1P2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CTAGE11P on UCSC Golden Path with GeneCards custom track

Genomic Location for CTAGE11P Gene

Chromosome:
13
Start:
75,237,753 bp from pter
End:
75,240,381 bp from pter
Size:
2,629 bases
Orientation:
Minus strand

Genomic View for CTAGE11P Gene

Genes around CTAGE11P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTAGE11P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTAGE11P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTAGE11P Gene

Proteins for CTAGE11P Gene

Post-translational modifications for CTAGE11P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTAGE11P Gene

Domains & Families for CTAGE11P Gene

Gene Families for CTAGE11P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CTAGE11P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTAGE11P Gene

Function for CTAGE11P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTAGE11P Gene

Localization for CTAGE11P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTAGE11P Gene

Pathways & Interactions for CTAGE11P Gene

SuperPathways for CTAGE11P Gene

No Data Available

Interacting Proteins for CTAGE11P Gene

Gene Ontology (GO) - Biological Process for CTAGE11P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTAGE11P Gene

Transcripts for CTAGE11P Gene

mRNA/cDNA for CTAGE11P Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTAGE11P Gene

CTAGE family, member 11, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CTAGE11P Gene

No ASD Table

Relevant External Links for CTAGE11P Gene

GeneLoc Exon Structure for
CTAGE11P
ECgene alternative splicing isoforms for
CTAGE11P

Expression for CTAGE11P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CTAGE11P Gene

mRNA differential expression in normal tissues according to GTEx for CTAGE11P Gene

This gene is overexpressed in Testis (x48.7).

NURSA nuclear receptor signaling pathways regulating expression of CTAGE11P Gene:

CTAGE11P

SOURCE GeneReport for Unigene cluster for CTAGE11P Gene:

Hs.567920
genes like me logo Genes that share expression patterns with CTAGE11P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CTAGE11P Gene

Orthologs for CTAGE11P Gene

Evolution for CTAGE11P Gene

ENSEMBL:
Gene Tree for CTAGE11P (if available)
TreeFam:
Gene Tree for CTAGE11P (if available)

No data available for Orthologs for CTAGE11P Gene

Paralogs for CTAGE11P Gene

No data available for Paralogs for CTAGE11P Gene

Variants for CTAGE11P Gene

Sequence variations from dbSNP and Humsavar for CTAGE11P Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs111548055 -- 75,238,496(+) GAGGA(A/G)GAGCT nc-transcript-variant
rs111615312 -- 75,240,950(+) TTGAT(A/G)CTTTA intron-variant, upstream-variant-2KB
rs111626910 -- 75,237,926(+) AAGAA(A/G)GCAAA nc-transcript-variant
rs111946912 -- 75,238,095(+) ACAGA(G/T)GTTTC nc-transcript-variant
rs112258293 -- 75,241,273(+) CATTA(A/G)GTATA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CTAGE11P Gene

Variant ID Type Subtype PubMed ID
nsv521444 CNV gain 19592680
nsv983603 CNV duplication 23825009

Relevant External Links for CTAGE11P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTAGE11P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTAGE11P Gene

Disorders for CTAGE11P Gene

Relevant External Links for CTAGE11P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTAGE11P

No disorders were found for CTAGE11P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTAGE11P Gene

Publications for CTAGE11P Gene

No publications were found for CTAGE11P Gene.

Products for CTAGE11P Gene

Sources for CTAGE11P Gene

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