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CTAG1B Gene

protein-coding   GIFtS: 45
GCID: GC0XM153845

Cancer/Testis Antigen 1B

(Previous name: cancer/testis antigen 1)
(Previous symbols: CTAG, CTAG1)
  See CTAG1B-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Cancer/Testis Antigen 1B1 2     ESO12 3
CTAG11 2 3 5     LAGE-22 3
CTAG1 2 3     LAGE2B2 3
Cancer/Testis Antigen 11 2     NY-ESO-12
Autoimmunogenic Cancer/Testis Antigen NY-ESO-12 3     Cancer Antigen 32
Cancer/Testis Antigen 6.12 3     New York Esophageal Squamous Cell Carcinoma 12
L Antigen Family Member 22 3     LAGE23
CT6.12 3     LAGE2A3

External Ids:    HGNC: 24911   Entrez Gene: 14852   Ensembl: ENSG000001840337   OMIM: 3001565   UniProtKB: P783583   

Export aliases for CTAG1B gene to outside databases

Previous GC identifers: GC0XP152282 GC0XM153410 GC0XM153499 GC0XM142391


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for CTAG1B Gene:
The protein encoded by this gene is an antigen that is overexpressed in many cancers but that is also expressed in
normal testis. This gene is found in a duplicated region of the X-chromosome and therefore has a neighboring gene
of identical sequence. (provided by RefSeq, Jan 2012)

GeneCards Summary for CTAG1B Gene:
CTAG1B (cancer/testis antigen 1B) is a protein-coding gene. Diseases associated with CTAG1B include biphasic synovial sarcoma, and esophageal squamous cell carcinoma. An important paralog of this gene is CTAG2.

Gene Wiki entry for CTAG1B Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the CTAG1B gene promoter:
         Bach1   MIF-1   CUTL1   Evi-1   RORalpha2   C/EBPalpha   HSF2   FOXJ2   ATF6   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for CTAG1B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CTAG1B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq28   Ensembl cytogenetic band:  Xq28   HGNC cytogenetic band: Xq28

CTAG1B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CTAG1B gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XM153845:  view genomic region     (about GC identifiers)

Start:
153,845,865 bp from pter      End:
153,847,533 bp from pter
Size:
1,669 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CTG1B_HUMAN, P78358 (See protein sequence)
Recommended Name: Cancer/testis antigen 1  
Size: 180 amino acids; 17992 Da
Selected PDB 3D structures from and Proteopedia for CTAG1B (see all 8):
2BNQ (3D)        2BNR (3D)        2F53 (3D)        2F54 (3D)        2P5E (3D)        2P5W (3D)    
Secondary accessions: A1L417 B7WNL9 Q7LBY4 Q9NY13
Alternative splicing: 2 isoforms:  P78358-1   P78358-2   

Explore the universe of human proteins at neXtProt for CTAG1B: NX_P78358

Explore proteomics data for CTAG1B at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See CTAG1B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001318.1  
    ENSEMBL proteins: 
     ENSP00000332602   ENSP00000352953  

    CTAG1B Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR015419 EKC/KEOPS_Pcc1

    Graphical View of Domain Structure for InterPro Entry P78358

    ProtoNet protein and cluster: P78358

    UniProtKB/Swiss-Prot: CTG1B_HUMAN, P78358
    Similarity: Belongs to the CTAG/PCC1 family


    Find genes that share domains with CTAG1B           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    Find genes that share ontologies with CTAG1B           About GenesLikeMe


    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    CTG1B_HUMAN, P78358: Cytoplasm
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    mitochondrion1
    nucleus1
    peroxisome1
    plasma membrane1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm ----

    Find genes that share ontologies with CTAG1B           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for CTAG1B About    
    See pathways by source

    SuperPathContained pathways About
    1Meiosis (EMD)
    Meiosis



        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CTAG1B
    Interactions:

        GeneGlobe Interaction Network for CTAG1B

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    Selected Interacting proteins for CTAG1B (P783581, 3 ENSP000003326024) via UniProtKB, MINT, STRING, and/or I2D (see all 8)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ENSG00000227357P137623I2D: score=1 
    ENSG00000227826P137623I2D: score=1 
    HLA-DRB4P137623I2D: score=1 
    MAGEC1O607321, 3, ENSP000002858794EBI-1188472,EBI-1188463 I2D: score=2 STRING: ENSP00000285879
    ENSG00000196101P794833I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CTAG1B (CTG1B)

    2 Novoseek inferred chemical compound relationships for CTAG1B gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    5-aza-2'deoxycytidine 65.8 11 18519754 (3), 10188057 (1), 11265773 (1), 16140944 (1) (see all 7)
    pullulan 60.4 5 16551878 (2), 18729190 (1), 17278093 (1), 18311489 (1)



    Find genes that share compounds with CTAG1B           About GenesLikeMe



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for CTAG1B gene: 
    NM_001327.2  

    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000328435(uc004fmf.1) ENST00000359887
    miRNA
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CTAG1B
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      QuantiTect SYBR Green Assays in human, mouse, rat CTAG1B
      QuantiFast Probe-based Assays in human, mouse, rat CTAG1B

    12 AceView cDNA sequences:

    NM_139250 AA634317 BQ575599 AJ003149 AJ275978 CR594675 U87459 AL553954 
    AF038567 AI218223 NM_001327 AL553953 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CTAG1B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TTTGTTTCTG
    CTAG1B Expression
    About this image

    CTAG1B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CTAG1B Protein Expression

    UniProtKB/Swiss-Prot: CTG1B_HUMAN, P78358
    Tissue specificity: Expressed in testis and ovary and in a wide variety of cancers. Detected in uterine
    myometrium. Expressed from 18 weeks until birth in human fetal testis. In the adult testis, is strongly expressed
    in spermatogonia and in primary spermatocytes, but not in post-meiotic cells or in testicular somatic cells (at
    protein level)

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CTAG1B

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for CTAG1B gene from Selected species (see all 4)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    zebrafish
    (Danio rerio)
    Actinopterygii CABZ01063556.16
    Uncharacterized protein
    35(a)
    1 → many
    10(44098873-44103318) ENSDARG00000086267
            Species with no ortholog for CTAG1B

    ENSEMBL Gene Tree for CTAG1B (if available)
    TreeFam Gene Tree for CTAG1B (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CTAG1B gene
    CTAG1A1 2  CTAG22  LAGE32  
    2 SIMAP similar genes for CTAG1B using alignment to 1 protein entry:     CTG1B_HUMAN:
    CTAG2    LAGE3

    Find genes that share paralogs with CTAG1B           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for CTAG1B:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv508816CNV Insertion20534489
    esv27930CNV Gain19812545
    nsv518228CNV Gain19592680
    esv29893CNV Gain19812545
    nsv519042CNV Gain19592680
    esv33199CNV Gain+Loss17666407
    esv33784CNV Gain+Loss17666407
    nsv7469OTHER Inversion18451855

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 300156    OMIM disorders: --

    8 diseases for CTAG1B:    
    About MalaCards
    biphasic synovial sarcoma    esophageal squamous cell carcinoma    soft tissue sarcoma    synovial sarcoma
    hepatocellular carcinoma    pancreatic cancer    ovarian cancer    lung cancer


    Find genes that share disorders with CTAG1B           About GenesLikeMe

    Selected Novoseek inferred disease relationships for CTAG1B gene (see all 38)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    testicular cancer 91.8 55 18982744 (2), 18396787 (2), 16432832 (2), 17625806 (2) (see all 48)
    melanoma 70.1 66 11397121 (5), 9547346 (3), 15623618 (3), 11259659 (2) (see all 41)
    cancer 68.2 127 12853579 (5), 17278093 (5), 11265773 (4), 15994128 (4) (see all 73)
    tumors 64.9 232 10502728 (8), 11406534 (6), 11351307 (4), 15026363 (4) (see all 97)
    metastatic melanoma 61.2 7 15534491 (2), 9547346 (1), 15867394 (1)
    uterine neoplasms 59.8 1 14695148 (1)
    sarcoma synovial 42.4 5 11668506 (3), 15683221 (1)
    nsclc 41.7 22 15069548 (5), 19545928 (3), 19795170 (3), 16596224 (2) (see all 9)
    ovarian cancer 40.8 6 16105096 (1), 16365599 (1), 9547346 (1), 18519754 (1) (see all 6)
    hepatocellular carcinoma 37.8 38 16872310 (9), 16091172 (2), 19212631 (2), 17637219 (2) (see all 11)


    Export disorders for CTAG1B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CTAG1B gene, integrated from 10 sources (see all 257):
    (articles sorted by number of sources associating them with CTAG1B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Multiple pathogenic and benign genomic rearrangements occur at a 35 kb duplication involving the NEMO and LAGE2 genes. (PubMed id 11709543)1, 2, 3 Aradhya S....Nelson D.L. (Hum. Mol. Genet. 2001)
    2. Genomic cloning and localization of CTAG, a gene encoding an autoimmunogenic cancer-testis antigen NY-ESO-1, to human chromosome Xq28. (PubMed id 9605863)1, 3, 9 Chen Y.T....Arden K.C. (Cytogenet. Cell Genet. 1997)
    3. A testicular antigen aberrantly expressed in human cancers detected by autologous antibody screening. (PubMed id 9050879)1, 2, 9 Chen Y.-T.... Old L.J. (Proc. Natl. Acad. Sci. U.S.A. 1997)
    4. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (Nature 2005)
    5. The cancer-testis gene, NY-ESO-1, is expressed in normal fetal and adult testes and in spermatocytic seminomas and testicular carcinoma in situ. (PubMed id 12065688)1, 2 Satie A.P.... Samson M. (Lab. Invest. 2002)
    6. DNA methylation is the primary silencing mechanism for a set of germ line- and tumor-specific genes with a CpG-rich promoter. (PubMed id 10523621)1, 2 De Smet C.... Boon T. (Mol. Cell. Biol. 1999)
    7. LAGE-1, a new gene with tumor specificity. (PubMed id 9626360)1, 2 Lethe B.G.... Boon T. (Int. J. Cancer 1998)
    8. A breast and melanoma-shared tumor antigen: T cell responses to antigenic peptides translated from different open reading frames. (PubMed id 9759882)1, 2 Wang R.-F.... Rosenberg S.A. (J. Immunol. 1998)
    9. NY-ESO-1 expression and immunogenicity in malignant and benign breast tumors. (PubMed id 15026363)1, 9 Sugita Y....Monden M. (Cancer Res. 2004)
    10. Expression of the cancer/testis antigen NY-ESO-1 in primary and metastatic malignant melanoma (MM)--correlation with prognostic factors. (PubMed id 17625806)1, 9 Velazquez E.F....Bhardwaj N. (Cancer Immun. 2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 1485 HGNC: 2491 AceView: CTAG1B.1 Ensembl:ENSG00000184033 euGenes: HUgn1485
    ECgene: CTAG1B H-InvDB: CTAG1B

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CTAG1B Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for CTAG1B Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CTAG1B gene:
    Search GeneIP for patents involving CTAG1B

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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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