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CTAG1A Gene

protein-coding   GIFtS: 48
GCID: GC0XP153813

Cancer/Testis Antigen 1A

  See CTAG1A-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Cancer/Testis Antigen 1A1 2     LAGE-22 3
LAGE2A2 3 5     Cancer/Testis Antigen 12
Autoimmunogenic Cancer/Testis Antigen NY-ESO-12 3     Cancer/Testis Antigen 1-A2
Cancer/Testis Antigen 6.12 3     CTAG3
L Antigen Family Member 22 3     CTAG13
CT6.12 3     LAGE23
ESO12 3     LAGE2B3

External Ids:    HGNC: 241981   Entrez Gene: 2461002   Ensembl: ENSG000001836787   OMIM: 3006575   UniProtKB: P783583   

Export aliases for CTAG1A gene to outside databases

Previous GC identifers: GC0XP152283 GC0XM153409 GC0XM153500 GC0XP153467


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for CTAG1A Gene:
CTAG1A is an identical copy of the CTAG1B gene (MIM 300156) (Aradhya et al., 2001 (PubMed 11709543)).(supplied by
OMIM, Mar 2008)

GeneCards Summary for CTAG1A Gene:
CTAG1A (cancer/testis antigen 1A) is a protein-coding gene. Diseases associated with CTAG1A include non-small cell lung carcinoma, and esophageal squamous cell carcinoma. An important paralog of this gene is CTAG2.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000023.10  NC_018934.2  NT_011681.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the CTAG1A gene promoter:
         Bach1   TBP   MIF-1   CUTL1   Evi-1   RORalpha2   C/EBPalpha   HSF2   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCTAG1A promoter sequence
   Search Chromatin IP Primers for CTAG1A

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CTAG1A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq28   Ensembl cytogenetic band:  Xq28   HGNC cytogenetic band: Xq28

CTAG1A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CTAG1A gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP153813:  view genomic region     (about GC identifiers)

Start:
153,813,407 bp from pter      End:
153,815,075 bp from pter
Size:
1,669 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: CTG1B_HUMAN, P78358 (See protein sequence)
Recommended Name: Cancer/testis antigen 1  
Size: 180 amino acids; 17992 Da
Selected PDB 3D structures from and Proteopedia for CTAG1A (see all 8):
2BNQ (3D)        2BNR (3D)        2F53 (3D)        2F54 (3D)        2P5E (3D)        2P5W (3D)    
Secondary accessions: A1L417 B7WNL9 Q7LBY4 Q9NY13
Alternative splicing: 2 isoforms:  P78358-1   P78358-2   

Explore the universe of human proteins at neXtProt for CTAG1A: NX_P78358

Explore proteomics data for CTAG1A at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See CTAG1A Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_640343.1  
    ENSEMBL proteins: 
     ENSP00000399822   ENSP00000332018  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR015419 EKC/KEOPS_Pcc1

    Graphical View of Domain Structure for InterPro Entry P78358

    ProtoNet protein and cluster: P78358

    UniProtKB/Swiss-Prot: CTG1B_HUMAN, P78358
    Similarity: Belongs to the CTAG/PCC1 family


    Find genes that share domains with CTAG1A           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI17137291
         
    Find genes that share ontologies with CTAG1A           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for CTAG1A:
     Decreased Hepatitis C virus re 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for CTAG1A

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    CTG1B_HUMAN, P78358: Cytoplasm
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    mitochondrion1
    nucleus1
    peroxisome1
    plasma membrane1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IDA--

    Find genes that share ontologies with CTAG1A           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for CTAG1A About    
    See pathways by source

    SuperPathContained pathways About
    1Meiosis (EMD)
    Meiosis




        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CTAG1A
    Interactions:

        Search GeneGlobe Interaction Network for CTAG1A

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    Selected Interacting proteins for CTAG1A (P783581, 3 ENSP000003320184) via UniProtKB, MINT, STRING, and/or I2D (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ENSG00000227357P137623, ENSP000004108574I2D: score=1 STRING: ENSP00000410857
    ENSG00000227826P137623I2D: score=1 
    HLA-DRB4P137623I2D: score=1 
    MAGEC1O607321, 3, ENSP000002858794EBI-1188472,EBI-1188463 I2D: score=2 STRING: ENSP00000285879
    ENSG00000196101P794833I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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      Browse compounds at ApexBio 

    Browse Tocris compounds for CTAG1A (CTG1B)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for CTAG1A gene: 
    NM_139250.1  

    Unigene Cluster for CTAG1A:

    Cancer/testis antigen 1A
    Hs.534310  [show with all ESTs]
    Unigene Representative Sequence: AJ275978
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000443287(uc004fme.3) ENST00000333128
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    Additional mRNA sequence: 

    AF038567.1 AJ003149.1 AJ275978.1 BC130362.1 BC130364.1 U87459.1 

    1 DOTS entry:

    DT.104006 

    12 AceView cDNA sequences:

    CR594675 BQ575599 AJ275978 AJ003149 NM_139250 AA634317 AL553954 U87459 
    AF038567 AL553953 NM_001327 AI218223 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CTAG1A expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    CTAG1A Expression
    About this image

    CTAG1A Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CTAG1A Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.534310

    UniProtKB/Swiss-Prot: CTG1B_HUMAN, P78358
    Tissue specificity: Expressed in testis and ovary and in a wide variety of cancers. Detected in uterine
    myometrium. Expressed from 18 weeks until birth in human fetal testis. In the adult testis, is strongly expressed
    in spermatogonia and in primary spermatocytes, but not in post-meiotic cells or in testicular somatic cells (at
    protein level)

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for CTAG1A gene from Selected species (see all 4)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    zebrafish
    (Danio rerio)
    Actinopterygii CABZ01063556.16
    Uncharacterized protein
    35(a)
    1 → many
    10(44098873-44103318) ENSDARG00000086267
            Species with no ortholog for CTAG1A

    ENSEMBL Gene Tree for CTAG1A (if available)
    TreeFam Gene Tree for CTAG1A (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CTAG1A gene
    CTAG1B1 2  CTAG22  LAGE32  
    2 SIMAP similar genes for CTAG1A using alignment to 1 protein entry:     CTG1B_HUMAN:
    CTAG2    LAGE3

    Find genes that share paralogs with CTAG1A           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    2 SNPs for CTAG1A    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2005331091,2
    --153814442(+) CCATGA/GAAGCA 2 K E mis10--------
    rs2000997471,2
    --153814793(+) ACTGAC/TTGCTG 2 T I mis10--------

    HapMap Linkage Disequilibrium report for CTAG1A (153813407 - 153815075 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for CTAG1A:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv508816CNV Insertion20534489
    esv27930CNV Gain19812545
    nsv518228CNV Gain19592680
    esv29893CNV Gain19812545
    nsv519042CNV Gain19592680
    esv33199CNV Gain+Loss17666407
    esv33784CNV Gain+Loss17666407
    nsv7469OTHER Inversion18451855

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 300657    OMIM disorders: --

    2 diseases for CTAG1A:    
    About MalaCards
    non-small cell lung carcinoma    esophageal squamous cell carcinoma


    Find genes that share disorders with CTAG1A           About GenesLikeMe


    Export disorders for CTAG1A gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CTAG1A gene, integrated from 10 sources (see all 17):
    (articles sorted by number of sources associating them with CTAG1A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Multiple pathogenic and benign genomic rearrangements occur at a 35 kb duplication involving the NEMO and LAGE2 genes. (PubMed id 11709543)1, 2, 3 Aradhya S....Nelson D.L. (Hum. Mol. Genet. 2001)
    2. DNA methylation is the primary silencing mechanism for a set of germ line- and tumor-specific genes with a CpG-rich promoter. (PubMed id 10523621)1, 2, 3 De Smet C.... Boon T. (Mol. Cell. Biol. 1999)
    3. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (Nature 2005)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. The cancer-testis gene, NY-ESO-1, is expressed in normal fetal and adult testes and in spermatocytic seminomas and testicular carcinoma in situ. (PubMed id 12065688)1, 2 Satie A.P.... Samson M. (Lab. Invest. 2002)
    6. A breast and melanoma-shared tumor antigen: T cell responses to antigenic peptides translated from different open reading frames. (PubMed id 9759882)1, 2 Wang R.-F.... Rosenberg S.A. (J. Immunol. 1998)
    7. LAGE-1, a new gene with tumor specificity. (PubMed id 9626360)1, 2 Lethe B.G.... Boon T. (Int. J. Cancer 1998)
    8. A testicular antigen aberrantly expressed in human cancers detected by autologous antibody screening. (PubMed id 9050879)1, 2 Chen Y.-T.... Old L.J. (Proc. Natl. Acad. Sci. U.S.A. 1997)
    9. Physical interaction of two cancer-testis antigens, MAGE-C1 (CT7) and NY-ESO-1 (CT6). (PubMed id 17137291)1 Cho H.J....Simpson A.J. (Cancer Immun. 2006)
    10. Expression of the MAGE-A4 and NY-ESO-1 cancer-testis antigens and T cell infiltration in non-small cell lung carcinoma and their prognostic significance. (PubMed id 16596224)1 Yoshida N....Nishimura T. (Int. J. Oncol. 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 246100 HGNC: 24198 AceView: CTAG1B.1 Ensembl:ENSG00000183678 euGenes: HUgn246100
    ECgene: CTAG1A H-InvDB: CTAG1A

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CTAG1A Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for CTAG1A Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CTAG1A gene:
    Search GeneIP for patents involving CTAG1A

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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