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Aliases for CT62 Gene

Aliases for CT62 Gene

  • Cancer/Testis Antigen 62 2 3 5

External Ids for CT62 Gene

Previous GeneCards Identifiers for CT62 Gene

  • GC15M069190
  • GC15M071402
  • GC15M048238

Summaries for CT62 Gene

GeneCards Summary for CT62 Gene

CT62 (Cancer/Testis Antigen 62) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CT62 Gene

Genomics for CT62 Gene

Regulatory Elements for CT62 Gene

Promoters for CT62 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CT62 on UCSC Golden Path with GeneCards custom track

Genomic Location for CT62 Gene

Chromosome:
15
Start:
71,110,244 bp from pter
End:
71,115,500 bp from pter
Size:
5,257 bases
Orientation:
Minus strand

Genomic View for CT62 Gene

Genes around CT62 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CT62 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CT62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CT62 Gene

Proteins for CT62 Gene

  • Protein details for CT62 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C5K7-CT62_HUMAN
    Recommended name:
    Cancer/testis antigen 62
    Protein Accession:
    P0C5K7

    Protein attributes for CT62 Gene

    Size:
    136 amino acids
    Molecular mass:
    15412 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CT62 Gene

Proteomics data for CT62 Gene at MOPED

Post-translational modifications for CT62 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CT62 Gene

No data available for DME Specific Peptides for CT62 Gene

Domains & Families for CT62 Gene

Protein Domains for CT62 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CT62 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CT62: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CT62 Gene

Function for CT62 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CT62 Gene

Localization for CT62 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CT62 Gene COMPARTMENTS Subcellular localization image for CT62 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CT62 Gene

Pathways & Interactions for CT62 Gene

SuperPathways for CT62 Gene

No Data Available

Interacting Proteins for CT62 Gene

Gene Ontology (GO) - Biological Process for CT62 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CT62 Gene

Drugs & Compounds for CT62 Gene

No Compound Related Data Available

Transcripts for CT62 Gene

mRNA/cDNA for CT62 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CT62 Gene

Cancer/testis antigen 62:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CT62 Gene

No ASD Table

Relevant External Links for CT62 Gene

GeneLoc Exon Structure for
CT62
ECgene alternative splicing isoforms for
CT62

Expression for CT62 Gene

mRNA expression in normal human tissues for CT62 Gene

mRNA differential expression in normal tissues according to GTEx for CT62 Gene

This gene is overexpressed in Testis (x44.2).

SOURCE GeneReport for Unigene cluster for CT62 Gene Hs.646533

mRNA Expression by UniProt/SwissProt for CT62 Gene

P0C5K7-CT62_HUMAN
Tissue specificity: Testis specific. Expressed in cancer cell lines.
genes like me logo Genes that share expression patterns with CT62: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for CT62 Gene

Orthologs for CT62 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for CT62 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CT62 35
  • 99.02 (n)
  • 98.53 (a)
CT62 36
  • 99 (a)
OneToOne
Species with no ortholog for CT62:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CT62 Gene

ENSEMBL:
Gene Tree for CT62 (if available)
TreeFam:
Gene Tree for CT62 (if available)

Paralogs for CT62 Gene

No data available for Paralogs for CT62 Gene

Variants for CT62 Gene

Sequence variations from dbSNP and Humsavar for CT62 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1052302 -- 71,110,510(-) ATTGA(A/G)AAAGG utr-variant-3-prime
rs6494895 -- 71,111,067(+) AGTAT(C/T)ATCAT utr-variant-3-prime
rs12438393 -- 71,113,035(+) gaaaa(A/G)aaaat intron-variant
rs28649439 -- 71,113,021(+) TAAAA(A/T)TAAAA intron-variant
rs59864115 -- 71,112,158(+) GCAGA(C/T)GCTGT reference, missense

Variation tolerance for CT62 Gene

Residual Variation Intolerance Score: 64.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.19; 4.20% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CT62 Gene

HapMap Linkage Disequilibrium report
CT62

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CT62 Gene

Disorders for CT62 Gene

Relevant External Links for CT62

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CT62

No disorders were found for CT62 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CT62 Gene

Publications for CT62 Gene

  1. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. (PMID: 15905330) Chen Y.-T. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2005) 2 3 4 67
  2. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila J.L. … Boerwinkle E. (Pharmacogenomics J. 2013) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CT62 Gene

Sources for CT62 Gene

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