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Aliases for CT55 Gene

Aliases for CT55 Gene

  • Cancer/Testis Antigen 55 2 3
  • Tumor Antigen BJ-HCC-20 3 4
  • CXorf48 3 4
  • Chromosome X Open Reading Frame 48 2
  • BRCA2-Interacting Protein 3
  • BJHCC20A 3

External Ids for CT55 Gene

Previous HGNC Symbols for CT55 Gene

  • CXorf48

Previous GeneCards Identifiers for CT55 Gene

  • GC0XM134291

Summaries for CT55 Gene

GeneCards Summary for CT55 Gene

CT55 (Cancer/Testis Antigen 55) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CT55 Gene

Genomics for CT55 Gene

Genomic Location for CT55 Gene

135,156,536 bp from pter
135,171,827 bp from pter
15,292 bases
Minus strand

Genomic View for CT55 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CT55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CT55 Gene

No data available for Regulatory Elements for CT55 Gene

Proteins for CT55 Gene

  • Protein details for CT55 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Cancer/testis antigen 55
    Protein Accession:
    Secondary Accessions:
    • Q9NWY8

    Protein attributes for CT55 Gene

    264 amino acids
    Molecular mass:
    29052 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CT55 Gene


neXtProt entry for CT55 Gene

Proteomics data for CT55 Gene at MOPED

Post-translational modifications for CT55 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CT55 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CT55 Gene

Domains for CT55 Gene

Protein Domains for CT55 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CT55: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CT55 Gene

Function for CT55 Gene

Gene Ontology (GO) - Molecular Function for CT55 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CT55: view

miRNA for CT55 Gene

miRTarBase miRNAs that target CT55

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CT55

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targets and HOMER Transcription for CT55 Gene

Localization for CT55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CT55 Gene

Pathways for CT55 Gene

SuperPathways for CT55 Gene

No Data Available

Interacting Proteins for CT55 Gene

Gene Ontology (GO) - Biological Process for CT55 Gene


No data available for Pathways by source for CT55 Gene

Transcripts for CT55 Gene

mRNA/cDNA for CT55 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CT55

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CT55 Gene

No ASD Table

Relevant External Links for CT55 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CT55 Gene

mRNA expression in normal human tissues for CT55 Gene

mRNA differential expression in normal tissues according to GTEx for CT55 Gene

This gene is overexpressed in Testis (21.4).

Protein differential expression in normal tissues for CT55 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CT55 Gene

genes like me logo Genes that share expressions with CT55: view

Expression partners for CT55 Gene

* - Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CT55 Gene

Orthologs for CT55 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CT55 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia CT55 35
  • 71.67 (n)
  • 55.83 (a)
CT55 36
  • 55 (a)
(Canis familiaris)
Mammalia LOC492152 35
  • 69.86 (n)
  • 57.08 (a)
(Pan troglodytes)
Mammalia LOC465871 35
  • 94.4 (n)
  • 91.24 (a)
CT55 36
  • 98 (a)
(Mus musculus)
Mammalia 4930502E18Rik 16
Gm14597 36
  • 30 (a)
Species with no ortholog for CT55:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CT55 Gene

Gene Tree for CT55 (if available)
Gene Tree for CT55 (if available)

Paralogs for CT55 Gene

(1) SIMAP similar genes for CT55 Gene using alignment to 1 proteins: Pseudogenes for CT55 Gene

genes like me logo Genes that share paralogs with CT55: view

No data available for Paralogs for CT55 Gene

Variants for CT55 Gene

Sequence variations from dbSNP and Humsavar for CT55 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2506496 -- 135,169,101(-) CAGTG(G/T)CTATT intron-variant
rs3813155 -- 135,160,400(+) AAAAT(A/G)TAAAT intron-variant
rs4576582 -- 135,166,201(+) gcaaa(A/G)tcttt intron-variant
rs5978099 -- 135,159,079(+) GCAAG(G/T)GGAAA intron-variant
rs5978100 -- 135,161,670(+) ATAAA(A/C)TCCTA intron-variant

Relevant External Links for CT55 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CT55 Gene

Disorders for CT55 Gene

No disorders were found for CT55 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CT55 Gene

Publications for CT55 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for CT55 Gene

Sources for CT55 Gene

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