CT47B1 Gene
protein-coding GIFtS: 28
GCID: GC0XM120006
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cancer/testis antigen family 47, member B1
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Aliases
for CT47B1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Cancer/Testis Antigen Family 47, Member B11 2 | | Cancer/Testis Antigen 47B2 | | CT47.131 2 3 | | Cancer/Testis Antigen Family 147, Member B12 | | Cancer/Testis Antigen 47.132 3 | | Cancer/Testis CT47 Family, Member 132 | | CT47A132 5 | | |
Export aliases for CT47B1 gene to outside databasesPrevious GC identifer: GC0XM119893 |
Summaries
for CT47B1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for CT47B1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000023.10 NC_018934.1 NT_011786.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the CT47B1 gene promoter:
SRF AML1a SRF (504 AA) NF-kappaB CREB POU2F1 deltaCREB POU2F1a NF-kappaB1 ATF6
Other transcription factors
Search SABiosciences Chromatin IP Primers for CT47B1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CT47B1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xq24 Ensembl cytogenetic band: Xq24 HGNC cytogenetic band: Xq24CT47B1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XM120006: view genomic region
(about GC identifiers)
Start:
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120,006,451 bp from pter |
End:
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120,009,779 bp from pter |
Size:
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3,329 bases |
Orientation:
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minus strand |
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Proteins
for CT47B1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CT47B_HUMAN, P0C2W7 (See
protein sequence)Recommended Name: Cancer/testis antigen 47B Size: 299 amino acids; 31319 Da
Secondary accessions: A6NM97Explore the universe of human proteins at neXtProt for CT47B1: NX_P0C2W7
CT47B1 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001139190.1
ENSEMBL proteins: ENSP00000360360
Human Recombinant Protein Products:
CT47B1 Antibody Products:
Assay Products for CT47B1: |
Protein
Domains /
Families
for CT47B1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: P0C2W7 |
Function
for CT47B1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CT47B1
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CT47B1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: CT47B1 (NM_001145718) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CT47B1 | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CT47B1 |
|
Pathways & Interactions
for CT47B1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CT47B1
|
Drugs & Compounds
for CT47B1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for CT47B1
Search CenterWatch for drugs/clinical trials and news about CT47B1 / CT47B
|
Transcripts
for CT47B1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for CT47B1 gene: NM_001145718.1 Unigene Cluster for CT47B1: Cancer/testis antigen family 47, member B1 Hs.729566 [show with all ESTs]Unigene Representative Sequence: NM_0011457181 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000371311(uc011muc.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CT47B1
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CT47B1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: CT47B1 (NM_001145718) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CT47B1 | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CT47B1 |
3 DOTS entries: DT.100019785 DT.121291789 DT.121322345
GeneLoc Exon Structure
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Expression
for CT47B1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| CT47B1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See CT47B1 Protein Expression from SPIRE MOPED and PaxDB
SOURCE GeneReport for Unigene cluster: Hs.729566
SABiosciences Custom PCR Arrays for CT47B1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CT47B1
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat CT47B1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CT47B1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CT47B1 |
Orthologs
for CT47B1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for CT47B1 (if available)
TreeFam Gene Tree for CT47B1 (if available) |
Paralogs
for CT47B1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for CT47B1 gene
- CT47A32 CT47A92 CT47A82 CT47A42 CT47A52 CT47A22 CT47A102 CT47A122
- CT47A62 CT47A12 CT47A72 CT47A112
12 SIMAP similar genes for CT47B1 using alignment to 1 protein entry: CT47B_HUMAN:CT47A1 CT47A10 CT47A11 CT47A12 CT47A2 CT47A3
CT47A4 CT47A5 CT47A6 CT47A7 CT47A8 CT47A9
CT47B1 for paralogs About GeneDecksing
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Genomic Variants
for CT47B1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr X pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for CT47B1 (120006451 - 120009779 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 6 variations for CT47B1
6 CNVs: 33176 74040 31560 36998 0668 36997 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CT47B1 |
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Disorders
/ Diseases
for CT47B1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 CT47B1 for disorders About MalaCards
CT47B1 for disorders About GeneDecksing
OMIM gene information: 300790
OMIM disorders: --
Export disorders for CT47B1 gene to outside databases
|
Publications
for CT47B1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for CT47B1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with CT47B1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. (PubMed id 16382448)1, 2, 3 Chen Y.T....Jongeneel C.V. (2006)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)2 Ross M.T.... Bentley D.R. (2005)
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External Searches for CT47B1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing CT47B1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CT47B1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CT47B1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for CT47B1 | Pharmacogenomics, SNPs, Pathways |
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| | |
About This Section
| Patent Information for CT47B1 gene:
Search GeneIP for patents involving CT47B1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CT47B1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for CT47B1 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CT47B1 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CT47B1 | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for CT47B1 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CT47B1 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CT47B1 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for CT47B1 | | OriGene Custom Protein Services for CT47B1 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CT47B1 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CT47B1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CT47B1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CT47B1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CT47B1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CT47B1 |
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| | | | Search Tocris compounds for CT47B1 |
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 | | | CT47B1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | |  |  |  | | | | Search ThermoFisher Antibodies for CT47B1 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CT47B1 |
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