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Aliases for CT47B1 Gene

Aliases for CT47B1 Gene

  • Cancer/Testis Antigen Family 47, Member B1 2 3
  • Cancer/Testis Antigen 47.13 3 4
  • CT47A13 3 6
  • CT47.13 3 4
  • Cancer/Testis Antigen Family 147, Member B1 3
  • Cancer/Testis CT47 Family, Member 13 3
  • Cancer/Testis CT47 Family 2
  • Cancer/Testis Antigen 47B 3
  • Member 13 2

External Ids for CT47B1 Gene

Previous GeneCards Identifiers for CT47B1 Gene

  • GC0XM119893
  • GC0XM120006

Summaries for CT47B1 Gene

GeneCards Summary for CT47B1 Gene

CT47B1 (Cancer/Testis Antigen Family 47, Member B1) is a Protein Coding gene. An important paralog of this gene is CT47A8.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CT47B1 Gene

Genomics for CT47B1 Gene

Regulatory Elements for CT47B1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CT47B1 Gene

Start:
120,872,597 bp from pter
End:
120,875,929 bp from pter
Size:
3,333 bases
Orientation:
Minus strand

Genomic View for CT47B1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CT47B1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CT47B1 Gene

Proteins for CT47B1 Gene

  • Protein details for CT47B1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C2W7-CT47B_HUMAN
    Recommended name:
    Cancer/testis antigen 47B
    Protein Accession:
    P0C2W7
    Secondary Accessions:
    • A6NM97

    Protein attributes for CT47B1 Gene

    Size:
    299 amino acids
    Molecular mass:
    31319 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CT47B1 Gene

Proteomics data for CT47B1 Gene at MOPED

Post-translational modifications for CT47B1 Gene

No Post-translational modifications

Other Protein References for CT47B1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CT47B1 Gene

Domains for CT47B1 Gene

Protein Domains for CT47B1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CT47B1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CT47B1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CT47B1 Gene

Function for CT47B1 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CT47B1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CT47B1 Gene

Localization for CT47B1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CT47B1 Gene COMPARTMENTS Subcellular localization image for CT47B1 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CT47B1 Gene

Pathways for CT47B1 Gene

SuperPathways for CT47B1 Gene

No Data Available

Interacting Proteins for CT47B1 Gene

Gene Ontology (GO) - Biological Process for CT47B1 Gene

None

No data available for Pathways by source for CT47B1 Gene

Transcripts for CT47B1 Gene

mRNA/cDNA for CT47B1 Gene

(0) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CT47B1 Gene

Cancer/testis antigen family 47, member B1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CT47B1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CT47B1 Gene

No ASD Table

Relevant External Links for CT47B1 Gene

GeneLoc Exon Structure for
CT47B1
ECgene alternative splicing isoforms for
CT47B1

Expression for CT47B1 Gene

mRNA expression in normal human tissues for CT47B1 Gene

mRNA differential expression in normal tissues according to GTEx for CT47B1 Gene

This gene is overexpressed in Testis (52.6).

Protein differential expression in normal tissues for CT47B1 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CT47B1 Gene

SOURCE GeneReport for Unigene cluster for CT47B1 Gene Hs.729566

genes like me logo Genes that share expressions with CT47B1: view

Expression partners for CT47B1 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CT47B1 Gene

Orthologs for CT47B1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CT47B1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CT47B1 35
  • 97.55 (n)
  • 94.98 (a)
CT47B1 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 36
  • 22 (a)
OneToMany
Species with no ortholog for CT47B1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CT47B1 Gene

ENSEMBL:
Gene Tree for CT47B1 (if available)
TreeFam:
Gene Tree for CT47B1 (if available)

Paralogs for CT47B1 Gene

Selected SIMAP similar genes for CT47B1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CT47B1: view

Variants for CT47B1 Gene

Sequence variations from dbSNP and Humsavar for CT47B1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs871733 -- 120,875,125(+) CCTTC(C/T)GGGGC reference, synonymous-codon
rs5957501 -- 120,873,491(+) AGTAA(C/T)GAAGG intron-variant
rs9698608 -- 120,875,073(+) CGACG(A/C)GGCCT reference, missense
rs41311647 -- 120,873,956(+) TCTTT(C/G)TCTTC missense, reference
rs41312586 -- 120,872,701(+) TGTAA(A/C)GAACT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CT47B1 Gene

Variant ID Type Subtype PubMed ID
nsv7061 CNV Loss 18451855
nsv9972 CNV Gain+Loss 18304495
nsv820952 CNV Deletion 20802225
esv27639 CNV Gain+Loss 19812545
nsv515167 CNV Complex 21397061

Relevant External Links for CT47B1 Gene

HapMap Linkage Disequilibrium report
CT47B1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CT47B1 Gene

Disorders for CT47B1 Gene

No disorders were found for CT47B1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CT47B1 Gene

Publications for CT47B1 Gene

  1. Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. (PMID: 16382448) Chen Y.-T. … Jongeneel C.V. (Genes Chromosomes Cancer 2006) 2 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4

Products for CT47B1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate CT47B1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CT47B1
    • Block miRNA regulation of CT47B1 using miScript Target Protectors

    Sources for CT47B1 Gene

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