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Aliases for CT47B1 Gene

Aliases for CT47B1 Gene

  • Cancer/Testis Antigen Family 47, Member B1 2 3 5
  • Cancer/Testis CT47 Family, Member 13 2 3
  • Cancer/Testis Antigen 47.13 3 4
  • CT47.13 3 4
  • Cancer/Testis Antigen Family 147, Member B1 3
  • Cancer/Testis Antigen 47B 3
  • CT47A13 3

External Ids for CT47B1 Gene

Previous GeneCards Identifiers for CT47B1 Gene

  • GC0XM119893
  • GC0XM120006

Summaries for CT47B1 Gene

GeneCards Summary for CT47B1 Gene

CT47B1 (Cancer/Testis Antigen Family 47, Member B1) is a Protein Coding gene. An important paralog of this gene is CT47A11.

Additional gene information for CT47B1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CT47B1 Gene

Genomics for CT47B1 Gene

Regulatory Elements for CT47B1 Gene

Enhancers for CT47B1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH120309 1.3 Ensembl ENCODE 14.6 +565.7 565729 2 PKNOX1 ARNT ARID4B FEZF1 ZNF2 ZNF302 ZNF416 ZNF143 ZNF548 SP3 NKAPP1 UPF3B EEF1A1P30 NKAP LINC01402 RHOXF2B CT47A6 CT47B1 CT47A1 CT47A12
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CT47B1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CT47B1 Gene

120,872,597 bp from pter
120,875,929 bp from pter
3,333 bases
Minus strand

Genomic View for CT47B1 Gene

Genes around CT47B1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CT47B1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CT47B1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CT47B1 Gene

Proteins for CT47B1 Gene

  • Protein details for CT47B1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Cancer/testis antigen 47B
    Protein Accession:
    Secondary Accessions:
    • A6NM97

    Protein attributes for CT47B1 Gene

    299 amino acids
    Molecular mass:
    31319 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CT47B1 Gene

Post-translational modifications for CT47B1 Gene

No Post-translational modifications

Other Protein References for CT47B1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CT47B1 Gene

Domains & Families for CT47B1 Gene

Gene Families for CT47B1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CT47B1 Gene


Suggested Antigen Peptide Sequences for CT47B1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CT47B1: view

No data available for UniProtKB/Swiss-Prot for CT47B1 Gene

Function for CT47B1 Gene

Phenotypes for CT47B1 Gene

GenomeRNAi human phenotypes for CT47B1:
genes like me logo Genes that share phenotypes with CT47B1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CT47B1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CT47B1 Gene

Localization for CT47B1 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CT47B1 gene
Compartment Confidence
nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CT47B1 Gene

Pathways & Interactions for CT47B1 Gene

SuperPathways for CT47B1 Gene

No Data Available

Interacting Proteins for CT47B1 Gene

Gene Ontology (GO) - Biological Process for CT47B1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CT47B1 Gene

Drugs & Compounds for CT47B1 Gene

No Compound Related Data Available

Transcripts for CT47B1 Gene

mRNA/cDNA for CT47B1 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CT47B1 Gene

Cancer/testis antigen family 47, member B1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CT47B1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CT47B1 Gene

No ASD Table

Relevant External Links for CT47B1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CT47B1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CT47B1 Gene

mRNA differential expression in normal tissues according to GTEx for CT47B1 Gene

This gene is overexpressed in Testis (x52.6).

Protein differential expression in normal tissues from HIPED for CT47B1 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CT47B1 Gene

Protein tissue co-expression partners for CT47B1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CT47B1 Gene:


SOURCE GeneReport for Unigene cluster for CT47B1 Gene:

genes like me logo Genes that share expression patterns with CT47B1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CT47B1 Gene

Orthologs for CT47B1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CT47B1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CT47B1 33 34
  • 97.55 (n)
(Canis familiaris)
Mammalia -- 34
  • 22 (a)
Species where no ortholog for CT47B1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CT47B1 Gene

Gene Tree for CT47B1 (if available)
Gene Tree for CT47B1 (if available)

Paralogs for CT47B1 Gene

(12) SIMAP similar genes for CT47B1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CT47B1: view

Variants for CT47B1 Gene

Sequence variations from dbSNP and Humsavar for CT47B1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000436269 -- 120,874,922(+) CTGAG(A/G)TCGGT reference, missense
rs1006254228 -- 120,874,466(+) CATCA(C/T)TTGGG intron-variant
rs1006623215 -- 120,875,170(+) AGCAG(C/G)GGAGG reference, synonymous-codon
rs1006697106 -- 120,874,226(+) CACAG(A/G)GACAC intron-variant
rs1010202154 -- 120,875,634(+) CTGGT(A/C)CCCTT reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CT47B1 Gene

Variant ID Type Subtype PubMed ID
esv27639 CNV gain+loss 19812545
nsv515167 CNV gain 21397061
nsv7061 CNV deletion 18451855
nsv820952 CNV deletion 20802225
nsv9972 CNV gain+loss 18304495

Variation tolerance for CT47B1 Gene

Residual Variation Intolerance Score: 98.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.57; 30.31% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CT47B1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CT47B1 Gene

Disorders for CT47B1 Gene

Relevant External Links for CT47B1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CT47B1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CT47B1 Gene

Publications for CT47B1 Gene

  1. Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. (PMID: 16382448) Chen YT … Jongeneel CV (Genes, chromosomes & cancer 2006) 2 3 4 60
  2. Analysis of the chromosome X exome in patients with autism spectrum disorders identified novel candidate genes, including TMLHE. (PMID: 23092983) Nava C … Depienne C (Translational psychiatry 2012) 4 60
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 4 60

Products for CT47B1 Gene

Sources for CT47B1 Gene

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