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Aliases for CT47A6 Gene

Aliases for CT47A6 Gene

  • Cancer/Testis Antigen Family 47, Member A6 2 3 5
  • Cancer/Testis CT47 Family, Member 6 2 3
  • CT47.6 3 4
  • CT47A1 CT47A2 CT47A3 CT47A4 CT47A5 CT47A6 CT47A7 CT47A8 CT47A9 CT47A10 CT47A11 CT47A12 4
  • Cancer/Testis Antigen 47A 3
  • Cancer/Testis Antigen 47 4
  • CT47.10 4
  • CT47.11 4
  • CT47.12 4
  • CT47.1 4
  • CT47.2 4
  • CT47.3 4
  • CT47.4 4
  • CT47.5 4
  • CT47.7 4
  • CT47.8 4
  • CT47.9 4
  • CT47 4

External Ids for CT47A6 Gene

Previous GeneCards Identifiers for CT47A6 Gene

  • GC0XM119912
  • GC0XM119921
  • GC0XM120092
  • GC0XM120944

Summaries for CT47A6 Gene

Entrez Gene Summary for CT47A6 Gene

  • This locus represents a member of the cancer/testis gene family 47. This family, also known as CT47, is comprised of 13 nearly identical loci clustered at Xq24. [provided by RefSeq, Sep 2010]

GeneCards Summary for CT47A6 Gene

CT47A6 (Cancer/Testis Antigen Family 47, Member A6) is a Protein Coding gene. An important paralog of this gene is CT47A8.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CT47A6 Gene

Genomics for CT47A6 Gene

Regulatory Elements for CT47A6 Gene

Enhancers for CT47A6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF121009 0.6 ENCODE 17.7 -47.7 -47655 0.2 ELF3 SOX13 SAP130 CEBPG TEAD3 CREM HOMEZ GATAD2A SOX5 TFE3 CT47A6 LOC100128122 ENSG00000270251
GH0XF120309 0.6 ENCODE 16.2 +652.1 652074 0.2 PKNOX1 ZNF133 ARID4B FEZF1 GLI4 ZNF48 ZNF2 ZNF121 GLIS2 ZNF416 NKAPP1 EEF1A1P30 RHOXF2B CT47B1 CT47A1 CT47A6 CT47A12 ZBTB33 NKAP CXorf56
GH0XF120313 0.9 ENCODE 16.2 +651.8 651787 0.3 PKNOX1 ARID4B FEZF1 ZNF2 ZNF302 ZNF416 ZNF143 ZNF548 SP3 REST NKAPP1 EEF1A1P30 RHOXF2B CT47B1 CT47A1 CT47A6 CT47A12 ZBTB33 NKAP CXorf56
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CT47A6 on UCSC Golden Path with GeneCards custom track

Genomic Location for CT47A6 Gene

Chromosome:
X
Start:
120,958,165 bp from pter
End:
120,961,487 bp from pter
Size:
3,323 bases
Orientation:
Minus strand

Genomic View for CT47A6 Gene

Genes around CT47A6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CT47A6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CT47A6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CT47A6 Gene

Proteins for CT47A6 Gene

  • Protein details for CT47A6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JQC4-CT47A_HUMAN
    Recommended name:
    Cancer/testis antigen 47A
    Protein Accession:
    Q5JQC4
    Secondary Accessions:
    • Q8N747

    Protein attributes for CT47A6 Gene

    Size:
    288 amino acids
    Molecular mass:
    30100 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CT47A6 Gene

Post-translational modifications for CT47A6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CT47A6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CT47A6 Gene

Domains & Families for CT47A6 Gene

Protein Domains for CT47A6 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CT47A6: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CT47A6 Gene

Function for CT47A6 Gene

genes like me logo Genes that share phenotypes with CT47A6: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CT47A6 Gene

Localization for CT47A6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CT47A6 Gene COMPARTMENTS Subcellular localization image for CT47A6 gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CT47A6 Gene

Pathways & Interactions for CT47A6 Gene

SuperPathways for CT47A6 Gene

No Data Available

Interacting Proteins for CT47A6 Gene

Gene Ontology (GO) - Biological Process for CT47A6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CT47A6 Gene

Transcripts for CT47A6 Gene

mRNA/cDNA for CT47A6 Gene

(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CT47A6 Gene

No ASD Table

Relevant External Links for CT47A6 Gene

GeneLoc Exon Structure for
CT47A6
ECgene alternative splicing isoforms for
CT47A6

Expression for CT47A6 Gene

mRNA expression in normal human tissues for CT47A6 Gene

mRNA differential expression in normal tissues according to GTEx for CT47A6 Gene

This gene is overexpressed in Testis (x53.0).

Protein differential expression in normal tissues from HIPED for CT47A6 Gene

This gene is overexpressed in Ovary (27.3), Bone (19.6), and Testis (16.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CT47A6 Gene



Protein tissue co-expression partners for CT47A6 Gene

NURSA nuclear receptor signaling pathways regulating expression of CT47A6 Gene:

CT47A6

SOURCE GeneReport for Unigene cluster for CT47A6 Gene:

Hs.723061

mRNA Expression by UniProt/SwissProt for CT47A6 Gene:

Q5JQC4-CT47A_HUMAN
Tissue specificity: Strongly expressed in testis, low expression in placenta, and very low expression in brain.
genes like me logo Genes that share expression patterns with CT47A6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for CT47A6 Gene

Orthologs for CT47A6 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CT47A6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 95 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 24 (a)
OneToMany
Species where no ortholog for CT47A6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CT47A6 Gene

ENSEMBL:
Gene Tree for CT47A6 (if available)
TreeFam:
Gene Tree for CT47A6 (if available)

Paralogs for CT47A6 Gene

(1) SIMAP similar genes for CT47A6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CT47A6: view

Variants for CT47A6 Gene

Sequence variations from dbSNP and Humsavar for CT47A6 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs112187612 -- 120,961,549(+) CTCAT(C/T)TGCTG upstream-variant-2KB, utr-variant-5-prime
rs199666705 -- 120,960,595(+) CTCCG(C/T)GGGCT reference, missense
rs369076692 -- 120,960,521(+) GGTTC(C/T)TCTGT reference, synonymous-codon
rs372047737 -- 120,960,526(+) TTCTG(C/T)GGCTG reference, missense
rs749291393 -- 120,960,490(+) ACCCT(C/T)TGGGG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CT47A6 Gene

Variant ID Type Subtype PubMed ID
dgv2405e212 CNV loss 25503493
dgv2406e212 CNV gain 25503493
dgv2407e212 CNV loss 25503493
dgv2408e212 CNV gain 25503493
dgv2409e212 CNV gain 25503493
dgv2410e212 CNV loss 25503493
esv27639 CNV gain+loss 19812545
esv3577211 CNV gain 25503493
nsv510856 CNV deletion 20534489
nsv515167 CNV gain 21397061
nsv7061 CNV deletion 18451855
nsv820952 CNV deletion 20802225
nsv9972 CNV gain+loss 18304495

Relevant External Links for CT47A6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CT47A6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CT47A6 Gene

Disorders for CT47A6 Gene

Relevant External Links for CT47A6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CT47A6

No disorders were found for CT47A6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CT47A6 Gene

Publications for CT47A6 Gene

  1. Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. (PMID: 16382448) Chen Y.-T. … Jongeneel C.V. (Genes Chromosomes Cancer 2006) 2 3 4 64
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for CT47A6 Gene

Sources for CT47A6 Gene

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