CT47A6 Gene
protein-coding GIFtS: 28
GCID: GC0XM120092
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cancer/testis antigen family 47, member A6
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Aliases
for CT47A6 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Cancer/Testis Antigen Family 47, Member A61 2 | | CT47.23 | | CT47.61 2 3 | | CT47.33 | | Cancer/Testis Antigen 47A2 | | CT47.43 | | Cancer/Testis CT47 Family, Member 62 | | CT47.53 | | CT473 | | CT47.73 | | CT47.13 | | CT47.83 | | CT47.103 | | CT47.93 | | CT47.113 | | Cancer/Testis Antigen 473 | | CT47.123 | | |
Export aliases for CT47A6 gene to outside databasesPrevious GC identifers: GC0XM119912 GC0XM119921 |
Summaries
for CT47A6 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for CT47A6:
This locus represents a member of the cancer/testis gene family 47. This family, also known as CT47, is comprised of 13nearly identical loci clustered at Xq24. (provided by RefSeq, Sep 2010)
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Genomic Views
for CT47A6 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000023.10 NT_011786.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the CT47A6 gene promoter:
POU2F1 POU2F1a
Other transcription factors
Search SABiosciences Chromatin IP Primers for CT47A6
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CT47A6 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xq24 Ensembl cytogenetic band: Xq24 HGNC cytogenetic band: Xq24CT47A6 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XM120092: view genomic region
(about GC identifiers)
Start:
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120,092,019 bp from pter |
End:
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120,095,337 bp from pter |
Size:
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3,319 bases |
Orientation:
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minus strand |
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Proteins
for CT47A6 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CT47A_HUMAN, Q5JQC4 (See
protein sequence)Recommended Name: Cancer/testis antigen 47A Size: 288 amino acids; 30100 Da
Secondary accessions: Q8N747Explore the universe of human proteins at neXtProt for CT47A6: NX_Q5JQC4
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q5JQC4
CT47A6 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001073610.1
ENSEMBL proteins: ENSP00000415974
Human Recombinant Protein Products:
CT47A6 Antibody Products:
Assay Products for CT47A6: |
Protein
Domains /
Families
for CT47A6 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q5JQC4 |
Function
for CT47A6 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CT47A6
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CT47A6
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: CT47A6 (NM_001080141) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CT47A6 | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CT47A6 |
|
Pathways & Interactions
for CT47A6 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CT47A6
|
Drugs & Compounds
for CT47A6 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for CT47A6
Search CenterWatch for drugs/clinical trials and news about CT47A6 / CT47A
|
Transcripts
for CT47A6 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for CT47A6 gene: NM_001080141.1 Unigene Cluster for CT47A6: Cancer/testis antigen family 47, member A6 Hs.723061 Unigene Representative Sequence: NM_0010801411 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000443600(uc004eth.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CT47A6
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CT47A6
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: CT47A6 (NM_001080141) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CT47A6 | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CT47A6 |
GeneLoc Exon Structure
|
Expression
for CT47A6 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| CT47A6 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See CT47A6 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CT47A6
SOURCE GeneReport for Unigene cluster: Hs.723061
UniProtKB/Swiss-Prot: CT47A_HUMAN, Q5JQC4Tissue specificity: Strongly expressed in testis, low expression in placenta, and very low expression in brain
SABiosciences Custom PCR Arrays for CT47A6
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CT47A6
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat CT47A6 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CT47A6 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CT47A6 |
Orthologs
for CT47A6 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for CT47A6 (if available)
TreeFam Gene Tree for CT47A6 (if available) |
Paralogs
for CT47A6 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for CT47A6 gene
- CT47A11 2 CT47A111 2 CT47A91 2 CT47A121 2 CT47A31 2 CT47A81 2 CT47A71 2 CT47A21 2
- CT47A41 2 CT47A101 2 CT47A51 2 CT47B12
1 SIMAP similar gene for CT47A6 using alignment to 1 protein entry: CT47A_HUMAN:CT47B1
CT47A6 for paralogs About GeneDecksing
|
Genomic Variants
for CT47A6 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr X pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for CT47A6 (120092019 - 120095337 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 6 variations for CT47A6
6 CNVs: 31561 33176 74040 36998 0668 36997 | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for CT47A6 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 CT47A6 for disorders About MalaCards
CT47A6 for disorders About GeneDecksing
OMIM gene information: 300785
OMIM disorders: --
Export disorders for CT47A6 gene to outside databases
|
Publications
for CT47A6 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for CT47A6 gene integrated from 9 sources:
(articles sorted by number of sources associating them with CT47A6) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. (PubMed id 16382448)1, 2, 3 Chen Y.T....Jongeneel C.V. (2006)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)2 Ross M.T.... Bentley D.R. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
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External Searches for CT47A6 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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|
Genome Databases showing CT47A6 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CT47A6 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CT47A6 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for CT47A6 | Pharmacogenomics, SNPs, Pathways |
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| | |
About This Section
| Patent Information for CT47A6 gene:
Search GeneIP for patents involving CT47A6
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CT47A6 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for CT47A6 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CT47A6 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CT47A6 | | | OriGene Protein Over-expression Lysate for CT47A6 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for CT47A6 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CT47A6 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CT47A6 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for CT47A6 | | OriGene Custom Protein Services for CT47A6 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CT47A6 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CT47A6 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CT47A6 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CT47A6 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CT47A6 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CT47A6 |
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| | | | Search Tocris compounds for CT47A6 |
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 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for CT47A6 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CT47A6 |
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