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Aliases for CT47A1 Gene

Aliases for CT47A1 Gene

  • Cancer/Testis Antigen Family 47, Member A1 2 3
  • CT47.1 3 4
  • CT47A1 CT47A2 CT47A3 CT47A4 CT47A5 CT47A6 CT47A7 CT47A8 CT47A9 CT47A10 CT47A11 CT47A12 4
  • Cancer/Testis CT47 Family, Member 1 3
  • Cancer/Testis CT47 Family 2
  • Cancer/Testis Antigen 47A 3
  • Cancer/Testis Antigen 47 4
  • Member 1 2
  • CT47.10 4
  • CT47.11 4
  • CT47.12 4
  • CT47.8 4
  • CT47.2 4
  • CT47.3 4
  • CT47.4 4
  • CT47.5 4
  • CT47.6 4
  • CT47.7 4
  • CT47.9 4
  • CT47 4

External Ids for CT47A1 Gene

Previous GeneCards Identifiers for CT47A1 Gene

  • GC0XM119946
  • GC0XM120112

Summaries for CT47A1 Gene

Entrez Gene Summary for CT47A1 Gene

  • This locus represents a member of the cancer/testis gene family 47. This family, also known as CT47, is comprised of 13 nearly identical loci clustered at Xq24. This locus is the most telomeric of the cluster.[provided by RefSeq, Sep 2010]

GeneCards Summary for CT47A1 Gene

CT47A1 (Cancer/Testis Antigen Family 47, Member A1) is a Protein Coding gene. An important paralog of this gene is CT47A8.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CT47A1 Gene

Genomics for CT47A1 Gene

Regulatory Elements for CT47A1 Gene

Genomic Location for CT47A1 Gene

Start:
120,982,466 bp from pter
End:
120,985,788 bp from pter
Size:
3,323 bases
Orientation:
Minus strand

Genomic View for CT47A1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CT47A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CT47A1 Gene

Proteins for CT47A1 Gene

  • Protein details for CT47A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JQC4-CT47A_HUMAN
    Recommended name:
    Cancer/testis antigen 47A
    Protein Accession:
    Q5JQC4
    Secondary Accessions:
    • Q8N747

    Protein attributes for CT47A1 Gene

    Size:
    288 amino acids
    Molecular mass:
    30100 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CT47A1 Gene

Proteomics data for CT47A1 Gene at MOPED

Post-translational modifications for CT47A1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CT47A1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CT47A1 Gene

Domains for CT47A1 Gene

Protein Domains for CT47A1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CT47A1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CT47A1 Gene

Function for CT47A1 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CT47A1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CT47A1 Gene

Localization for CT47A1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CT47A1 Gene COMPARTMENTS Subcellular localization image for CT47A1 gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CT47A1 Gene

Pathways for CT47A1 Gene

SuperPathways for CT47A1 Gene

No Data Available

Interacting Proteins for CT47A1 Gene

Gene Ontology (GO) - Biological Process for CT47A1 Gene

None

No data available for Pathways by source for CT47A1 Gene

Transcripts for CT47A1 Gene

mRNA/cDNA for CT47A1 Gene

(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CT47A1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CT47A1 Gene

No ASD Table

Relevant External Links for CT47A1 Gene

GeneLoc Exon Structure for
CT47A1
ECgene alternative splicing isoforms for
CT47A1

Expression for CT47A1 Gene

mRNA expression in normal human tissues for CT47A1 Gene

mRNA differential expression in normal tissues according to GTEx for CT47A1 Gene

This gene is overexpressed in Testis (53.0).

Protein differential expression in normal tissues for CT47A1 Gene

This gene is overexpressed in Ovary (27.3), Bone (19.6), and Testis (16.4).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for CT47A1 Gene

mRNA Expression by UniProt/SwissProt for CT47A1 Gene

Q5JQC4-CT47A_HUMAN
Tissue specificity: Strongly expressed in testis, low expression in placenta, and very low expression in brain.
genes like me logo Genes that share expressions with CT47A1: view

Expression partners for CT47A1 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for CT47A1 Gene

Orthologs for CT47A1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CT47A1 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia -- 36
  • 24 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 95 (a)
OneToMany
Species with no ortholog for CT47A1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CT47A1 Gene

ENSEMBL:
Gene Tree for CT47A1 (if available)
TreeFam:
Gene Tree for CT47A1 (if available)

Paralogs for CT47A1 Gene

Selected SIMAP similar genes for CT47A1 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CT47A1 Gene

genes like me logo Genes that share paralogs with CT47A1: view

Variants for CT47A1 Gene

Sequence variations from dbSNP and Humsavar for CT47A1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs57063811 -- 120,987,320(+) CATCA(A/T)CTCAG upstream-variant-2KB
rs113905349 -- 120,987,216(+) CTGCT(C/G)TCTGA upstream-variant-2KB
rs141553927 -- 120,987,519(+) GATGC(A/G)ATGTT upstream-variant-2KB
rs141988797 -- 120,985,785(+) CTGGT(C/T)GGCAG upstream-variant-2KB
rs142522096 -- 120,987,259(+) AATTG(A/T)GCAAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CT47A1 Gene

Variant ID Type Subtype PubMed ID
nsv7061 CNV Loss 18451855
nsv9972 CNV Gain+Loss 18304495
nsv820952 CNV Deletion 20802225
esv27639 CNV Gain+Loss 19812545
nsv515167 CNV Complex 21397061
nsv510856 CNV Loss 20534489

Relevant External Links for CT47A1 Gene

HapMap Linkage Disequilibrium report
CT47A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CT47A1 Gene

Disorders for CT47A1 Gene

No disorders were found for CT47A1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CT47A1 Gene

Publications for CT47A1 Gene

  1. Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. (PMID: 16382448) Chen Y.-T. … Jongeneel C.V. (Genes Chromosomes Cancer 2006) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4

Products for CT47A1 Gene

Sources for CT47A1 Gene

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