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Aliases for CSTF3-AS1 Gene

Subcategory (RNA class) for CSTF3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CSTF3-AS1 Gene

  • CSTF3 Antisense RNA 1 (Head To Head) 2 3

External Ids for CSTF3-AS1 Gene

ORGUL Members for CSTF3-AS1 Gene

Summaries for CSTF3-AS1 Gene

GeneCards Summary for CSTF3-AS1 Gene

CSTF3-AS1 (CSTF3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for CSTF3-AS1 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CSTF3-AS1 Gene

Genomics for CSTF3-AS1 Gene

Genomic Location for CSTF3-AS1 Gene

Start:
33,161,657 bp from pter
End:
33,191,598 bp from pter
Size:
29,942 bases
Orientation:
Plus strand

Genomic View for CSTF3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CSTF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSTF3-AS1 Gene

No data available for Regulatory Elements for CSTF3-AS1 Gene

Proteins for CSTF3-AS1 Gene

Post-translational modifications for CSTF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSTF3-AS1 Gene

Domains for CSTF3-AS1 Gene

Gene Families for CSTF3-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CSTF3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSTF3-AS1 Gene

Function for CSTF3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CSTF3-AS1 Gene

Localization for CSTF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSTF3-AS1 Gene

Pathways for CSTF3-AS1 Gene

SuperPathways for CSTF3-AS1 Gene

No Data Available

Interacting Proteins for CSTF3-AS1 Gene

Gene Ontology (GO) - Biological Process for CSTF3-AS1 Gene

None

No data available for Pathways by source for CSTF3-AS1 Gene

Transcripts for CSTF3-AS1 Gene

mRNA/cDNA for CSTF3-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CSTF3-AS1 Gene

CSTF3 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CSTF3-AS1 Gene

No ASD Table

Relevant External Links for CSTF3-AS1 Gene

GeneLoc Exon Structure for
CSTF3-AS1
ECgene alternative splicing isoforms for
CSTF3-AS1

Expression for CSTF3-AS1 Gene

mRNA expression in normal human tissues for CSTF3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CSTF3-AS1 Gene

This gene is overexpressed in Testis (13.4) and Brain - Spinal cord (cervical c-1) (4.9).

SOURCE GeneReport for Unigene cluster for CSTF3-AS1 Gene Hs.423476

genes like me logo Genes that share expressions with CSTF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for CSTF3-AS1 Gene

Orthologs for CSTF3-AS1 Gene

Evolution for CSTF3-AS1 Gene

ENSEMBL:
Gene Tree for CSTF3-AS1 (if available)
TreeFam:
Gene Tree for CSTF3-AS1 (if available)

No data available for Orthologs for CSTF3-AS1 Gene

Paralogs for CSTF3-AS1 Gene

No data available for Paralogs for CSTF3-AS1 Gene

Variants for CSTF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CSTF3-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs608568 -- 33,186,293(+) TTACC(C/T)ATTTT intron-variant
rs609409 -- 33,165,012(-) AGAAT(A/G)TCATT intron-variant
rs647083 -- 33,178,771(+) CATGA(C/T)TGTAA intron-variant
rs681016 -- 33,165,050(-) cacac(A/T)cagcc intron-variant
rs833029 -- 33,164,132(-) tgaaa(C/T)cctgt intron-variant

Relevant External Links for CSTF3-AS1 Gene

HapMap Linkage Disequilibrium report
CSTF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CSTF3-AS1 Gene

Disorders for CSTF3-AS1 Gene

No disorders were found for CSTF3-AS1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CSTF3-AS1 Gene

Publications for CSTF3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for CSTF3-AS1 Gene

Sources for CSTF3-AS1 Gene

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