Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CSTF3-AS1 Gene

Subcategory (RNA class) for CSTF3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CSTF3-AS1 Gene

  • CSTF3 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for CSTF3-AS1 Gene

Summaries for CSTF3-AS1 Gene

GeneCards Summary for CSTF3-AS1 Gene

CSTF3-AS1 (CSTF3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSTF3-AS1 Gene

Genomics for CSTF3-AS1 Gene

Regulatory Elements for CSTF3-AS1 Gene

Enhancers for CSTF3-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CSTF3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CSTF3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CSTF3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CSTF3-AS1 Gene

Chromosome:
11
Start:
33,161,657 bp from pter
End:
33,191,598 bp from pter
Size:
29,942 bases
Orientation:
Plus strand

Genomic View for CSTF3-AS1 Gene

Genes around CSTF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSTF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSTF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSTF3-AS1 Gene

Proteins for CSTF3-AS1 Gene

Post-translational modifications for CSTF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSTF3-AS1 Gene

Domains & Families for CSTF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSTF3-AS1 Gene

Function for CSTF3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSTF3-AS1 Gene

Localization for CSTF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSTF3-AS1 Gene

Pathways & Interactions for CSTF3-AS1 Gene

SuperPathways for CSTF3-AS1 Gene

No Data Available

Interacting Proteins for CSTF3-AS1 Gene

Gene Ontology (GO) - Biological Process for CSTF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSTF3-AS1 Gene

Drugs & Compounds for CSTF3-AS1 Gene

No Compound Related Data Available

Transcripts for CSTF3-AS1 Gene

mRNA/cDNA for CSTF3-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CSTF3-AS1 Gene

CSTF3 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CSTF3-AS1 Gene

No ASD Table

Relevant External Links for CSTF3-AS1 Gene

GeneLoc Exon Structure for
CSTF3-AS1
ECgene alternative splicing isoforms for
CSTF3-AS1

Expression for CSTF3-AS1 Gene

mRNA expression in normal human tissues for CSTF3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CSTF3-AS1 Gene

This gene is overexpressed in Testis (x13.4) and Brain - Spinal cord (cervical c-1) (x4.9).

SOURCE GeneReport for Unigene cluster for CSTF3-AS1 Gene Hs.423476

genes like me logo Genes that share expression patterns with CSTF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CSTF3-AS1 Gene

Orthologs for CSTF3-AS1 Gene

Evolution for CSTF3-AS1 Gene

ENSEMBL:
Gene Tree for CSTF3-AS1 (if available)
TreeFam:
Gene Tree for CSTF3-AS1 (if available)

No data available for Orthologs for CSTF3-AS1 Gene

Paralogs for CSTF3-AS1 Gene

No data available for Paralogs for CSTF3-AS1 Gene

Variants for CSTF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CSTF3-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs608568 -- 33,186,293(+) TTACC(C/T)ATTTT intron-variant
rs609409 -- 33,165,012(-) AGAAT(A/G)TCATT intron-variant
rs647083 -- 33,178,771(+) CATGA(C/T)TGTAA intron-variant
rs681016 -- 33,165,050(-) cacac(A/T)cagcc intron-variant
rs833029 -- 33,164,132(-) tgaaa(C/T)cctgt intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CSTF3-AS1 Gene

Disorders for CSTF3-AS1 Gene

Relevant External Links for CSTF3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CSTF3-AS1

No disorders were found for CSTF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSTF3-AS1 Gene

Publications for CSTF3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for CSTF3-AS1 Gene

Sources for CSTF3-AS1 Gene

Content