Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CSTF3-AS1 Gene

Subcategory (RNA class) for CSTF3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CSTF3-AS1 Gene

  • CSTF3 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for CSTF3-AS1 Gene

Summaries for CSTF3-AS1 Gene

GeneCards Summary for CSTF3-AS1 Gene

CSTF3-AS1 (CSTF3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSTF3-AS1 Gene

Genomics for CSTF3-AS1 Gene

Regulatory Elements for CSTF3-AS1 Gene

Enhancers for CSTF3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F033133 1 Ensembl ENCODE 12.1 -27.0 -27004 2.5 ZNF362 SIN3A RAD21 YY1 ZNF121 JUND SMARCA4 POLR2A HDAC2 ADNP CSTF3 CSTF3-AS1 TCP11L1 DEPDC7 PIR59958
GH11F033187 1 FANTOM5 Ensembl ENCODE 11.6 +26.5 26484 1.6 BHLHE40 POU5F1 WT1 CSTF3 CSTF3-AS1 HIPK3 TCP11L1 DEPDC7 GC11M033190 GC11M033171 ENSG00000206808
GH11F033275 1 Ensembl ENCODE 10.3 +112.2 112242 0.6 DDX20 ZNF175 PTRF PYGO2 RELA IRF9 DIDO1 ZNF584 KLF13 ZNF639 CSTF3 CSTF3-AS1 HIPK3 KIAA1549L
GH11F033184 0.7 ENCODE 11.6 +24.2 24181 1.9 BCOR SMARCA5 L3MBTL2 ZMYM3 CEBPB ZIC2 TFDP1 HDAC2 IKZF1 KDM1A TCP11L1 CSTF3 CSTF3-AS1 HIPK3 PIGCP1 GC11M033190 ENSG00000206808 GC11M033171
GH11F033329 0.7 ENCODE 11.2 +168.2 168243 0.1 CTCF ZNF654 TRIM22 REST RAD21 RFX5 IKZF1 SMC3 ZNF207 ZNF143 CSTF3 CSTF3-AS1 HIPK3 TCP11L1 KIAA1549L
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CSTF3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CSTF3-AS1 Gene

33,161,657 bp from pter
33,191,598 bp from pter
29,942 bases
Plus strand

Genomic View for CSTF3-AS1 Gene

Genes around CSTF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSTF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSTF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSTF3-AS1 Gene

Proteins for CSTF3-AS1 Gene

Post-translational modifications for CSTF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSTF3-AS1 Gene

Domains & Families for CSTF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSTF3-AS1 Gene

Function for CSTF3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSTF3-AS1 Gene

Localization for CSTF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSTF3-AS1 Gene

Pathways & Interactions for CSTF3-AS1 Gene

SuperPathways for CSTF3-AS1 Gene

No Data Available

Interacting Proteins for CSTF3-AS1 Gene

Gene Ontology (GO) - Biological Process for CSTF3-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CSTF3-AS1 Gene

Transcripts for CSTF3-AS1 Gene

mRNA/cDNA for CSTF3-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CSTF3-AS1 Gene

CSTF3 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CSTF3-AS1 Gene

No ASD Table

Relevant External Links for CSTF3-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CSTF3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CSTF3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CSTF3-AS1 Gene

This gene is overexpressed in Testis (x13.4) and Brain - Spinal cord (cervical c-1) (x4.9).

SOURCE GeneReport for Unigene cluster for CSTF3-AS1 Gene:

genes like me logo Genes that share expression patterns with CSTF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CSTF3-AS1 Gene

Orthologs for CSTF3-AS1 Gene

Evolution for CSTF3-AS1 Gene

Gene Tree for CSTF3-AS1 (if available)
Gene Tree for CSTF3-AS1 (if available)

No data available for Orthologs for CSTF3-AS1 Gene

Paralogs for CSTF3-AS1 Gene

No data available for Paralogs for CSTF3-AS1 Gene

Variants for CSTF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CSTF3-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10219393 -- 33,172,232(+) aaatt(A/T)AAAAA intron-variant
rs10692803 -- 33,172,563(+) ATAAA(-/TAAA)CCAAA intron-variant
rs10767993 -- 33,162,393(+) TAAAA(A/G)TACAC intron-variant, upstream-variant-2KB
rs10767994 -- 33,173,572(+) TTATA(A/C)AAATG intron-variant
rs10767995 -- 33,175,873(+) AGAAG(G/T)AACGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CSTF3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv971999 CNV duplication 23825009
nsv521130 CNV gain 19592680
nsv467786 CNV gain 19166990
esv3625871 CNV loss 21293372
esv2762904 CNV gain 21179565
esv2761660 CNV gain 21179565
dgv1742n54 CNV gain 21841781
dgv1093n100 CNV gain 25217958

Relevant External Links for CSTF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CSTF3-AS1 Gene

Disorders for CSTF3-AS1 Gene

Relevant External Links for CSTF3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CSTF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSTF3-AS1 Gene

Publications for CSTF3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for CSTF3-AS1 Gene

Sources for CSTF3-AS1 Gene

Loading form....