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Aliases for CST13P Gene

Aliases for CST13P Gene

  • Cystatin 13, Pseudogene 2 3 5
  • Cystatin T 2 3
  • Cystatin Pseudogene 3
  • CTES6 3
  • CSTT 3

External Ids for CST13P Gene

Summaries for CST13P Gene

GeneCards Summary for CST13P Gene

CST13P (Cystatin 13, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CST13P Gene

Genomics for CST13P Gene

Genomic Location for CST13P Gene

Chromosome:
20
Start:
23,519,146 bp from pter
End:
23,542,018 bp from pter
Size:
22,873 bases
Orientation:
Plus strand

Genomic View for CST13P Gene

Genes around CST13P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CST13P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CST13P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CST13P Gene

No data available for Regulatory Elements for CST13P Gene

Proteins for CST13P Gene

Post-translational modifications for CST13P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CST13P Gene

Domains & Families for CST13P Gene

Gene Families for CST13P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CST13P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CST13P Gene

Function for CST13P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CST13P Gene

Localization for CST13P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CST13P Gene

Pathways & Interactions for CST13P Gene

SuperPathways for CST13P Gene

No Data Available

Interacting Proteins for CST13P Gene

Gene Ontology (GO) - Biological Process for CST13P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CST13P Gene

Drugs & Compounds for CST13P Gene

No Compound Related Data Available

Transcripts for CST13P Gene

mRNA/cDNA for CST13P Gene

(7) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CST13P Gene

Cystatin 13, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CST13P Gene

No ASD Table

Relevant External Links for CST13P Gene

GeneLoc Exon Structure for
CST13P
ECgene alternative splicing isoforms for
CST13P

Expression for CST13P Gene

mRNA expression in normal human tissues for CST13P Gene

mRNA differential expression in normal tissues according to GTEx for CST13P Gene

This gene is overexpressed in Testis (x52.8).

SOURCE GeneReport for Unigene cluster for CST13P Gene Hs.400007

genes like me logo Genes that share expression patterns with CST13P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CST13P Gene

Orthologs for CST13P Gene

Evolution for CST13P Gene

ENSEMBL:
Gene Tree for CST13P (if available)
TreeFam:
Gene Tree for CST13P (if available)

No data available for Orthologs for CST13P Gene

Paralogs for CST13P Gene

No data available for Paralogs for CST13P Gene

Variants for CST13P Gene

Sequence variations from dbSNP and Humsavar for CST13P Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs238641 -- 23,530,020(-) GCAGG(C/T)AAAAC intron-variant
rs238642 -- 23,529,875(+) ATGAA(C/T)GCTCA intron-variant
rs238643 -- 23,526,892(-) AGGAT(A/G)GTTAG intron-variant
rs238644 -- 23,526,417(-) AAGAA(C/T)GAGAC intron-variant
rs238645 -- 23,524,419(+) CTTAT(G/T)CGTCT intron-variant

Relevant External Links for CST13P Gene

HapMap Linkage Disequilibrium report
CST13P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CST13P Gene

Disorders for CST13P Gene

Relevant External Links for CST13P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CST13P

No disorders were found for CST13P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CST13P Gene

Publications for CST13P Gene

  1. Evolution and human tissue expression of the Cres/Testatin subgroup genes, a reproductive tissue specific subgroup of the type 2 cystatins. (PMID: 20565543) Frygelius J. … TAPhAPnen V. (Evol. Dev. 2010) 2 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CST13P Gene

Sources for CST13P Gene

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