Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CST13P Gene

Aliases for CST13P Gene

  • Cystatin 13, Pseudogene 2 3 5
  • Cystatin T 2 3
  • Cystatin Pseudogene 3
  • CTES6 3
  • CSTT 3

External Ids for CST13P Gene

Summaries for CST13P Gene

GeneCards Summary for CST13P Gene

CST13P (Cystatin 13, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CST13P Gene

Genomics for CST13P Gene

Regulatory Elements for CST13P Gene

Enhancers for CST13P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F023658 1.1 FANTOM5 ENCODE 16.2 +141.1 141144 3.9 HDGF MLX ZFP64 ARID4B YBX1 DMAP1 SLC30A9 ZNF207 FOS PAF1 ENSG00000230908 CST13P ENSG00000260202 CST8 CST12P CST11 POM121L3P LOC100419956 CST9L CST9
GH20F023533 0.2 ENCODE 0.4 +14.4 14350 0.6 BCL11A POU5F1 CST9 CSTL1 NAPB CST13P CST9LP1
GH20F023541 0.4 Ensembl 0.3 +22.5 22455 0.8 GLIS1 ZIC2 CSTL1 NAPB CST9LP1 CST13P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CST13P on UCSC Golden Path with GeneCards custom track

Genomic Location for CST13P Gene

23,519,146 bp from pter
23,542,018 bp from pter
22,873 bases
Plus strand

Genomic View for CST13P Gene

Genes around CST13P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CST13P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CST13P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CST13P Gene

Proteins for CST13P Gene

Post-translational modifications for CST13P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CST13P Gene

Domains & Families for CST13P Gene

Gene Families for CST13P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CST13P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CST13P Gene

Function for CST13P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CST13P Gene

Localization for CST13P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CST13P Gene

Pathways & Interactions for CST13P Gene

SuperPathways for CST13P Gene

No Data Available

Interacting Proteins for CST13P Gene

Gene Ontology (GO) - Biological Process for CST13P Gene


No data available for Pathways by source and SIGNOR curated interactions for CST13P Gene

Transcripts for CST13P Gene

mRNA/cDNA for CST13P Gene

(7) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CST13P Gene

Cystatin 13, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CST13P Gene

No ASD Table

Relevant External Links for CST13P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CST13P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CST13P Gene

mRNA differential expression in normal tissues according to GTEx for CST13P Gene

This gene is overexpressed in Testis (x52.8).

NURSA nuclear receptor signaling pathways regulating expression of CST13P Gene:


SOURCE GeneReport for Unigene cluster for CST13P Gene:

genes like me logo Genes that share expression patterns with CST13P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CST13P Gene

Orthologs for CST13P Gene

Evolution for CST13P Gene

Gene Tree for CST13P (if available)
Gene Tree for CST13P (if available)

No data available for Orthologs for CST13P Gene

Paralogs for CST13P Gene

No data available for Paralogs for CST13P Gene

Variants for CST13P Gene

Sequence variations from dbSNP and Humsavar for CST13P Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10439593 -- 23,525,913(+) aaaaa(A/G)gaaaa intron-variant
rs111338064 -- 23,527,003(+) GAGTA(C/G)AACTG intron-variant
rs111411650 -- 23,536,614(+) ATCAT(C/T)AGCCC intron-variant
rs111518025 -- 23,539,605(+) GCCCG(C/T)TGGAG intron-variant
rs111594190 -- 23,522,287(+) GCCCT(C/T)GACTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CST13P Gene

Variant ID Type Subtype PubMed ID
esv2722298 CNV deletion 23290073
esv3645525 CNV gain 21293372
nsv1065390 CNV loss 25217958
nsv458949 CNV gain 19166990
nsv470544 CNV gain 18288195
nsv585722 CNV loss 21841781
nsv585723 CNV gain 21841781

Relevant External Links for CST13P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CST13P Gene

Disorders for CST13P Gene

Relevant External Links for CST13P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CST13P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CST13P Gene

Publications for CST13P Gene

  1. Evolution and human tissue expression of the Cres/Testatin subgroup genes, a reproductive tissue specific subgroup of the type 2 cystatins. (PMID: 20565543) Frygelius J. … TAPhAPnen V. (Evol. Dev. 2010) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CST13P Gene

Sources for CST13P Gene

Loading form....