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Aliases for CSPG4P1Y Gene

Aliases for CSPG4P1Y Gene

  • Chondroitin Sulfate Proteoglycan 4 Pseudogene 1, Y-Linked 2 3 5
  • Chondroitin Sulfate Proteoglycan 4-Like, Y-Linked Pseudogene 1 2 3
  • Chondroitin Sulfate Proteoglycan 4 Pseudogene, Y-Linked 1 3
  • Chondroitin Sulfate Proteoglycan 4 Pseudogene 1 2
  • CSPG4LYP1 3
  • CSPG4PY1 3
  • CSPG4LY 3
  • CSPG4P1 3

External Ids for CSPG4P1Y Gene

Previous HGNC Symbols for CSPG4P1Y Gene

  • CSPG4LYP1
  • CSPG4P1

Previous GeneCards Identifiers for CSPG4P1Y Gene

  • GC0YP027631
  • GC0YP027635
  • GC0YP027648
  • GC0YP027664
  • GC0YP027675
  • GC0YP027687

Summaries for CSPG4P1Y Gene

Entrez Gene Summary for CSPG4P1Y Gene

  • There are two copies of this pseudogene within the P1 palindrome on chromosome Y. This record represents the more telomeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for CSPG4P1Y Gene

CSPG4P1Y (Chondroitin Sulfate Proteoglycan 4 Pseudogene 1, Y-Linked) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSPG4P1Y Gene

Genomics for CSPG4P1Y Gene

Genomic Location for CSPG4P1Y Gene

Chromosome:
Y
Start:
25,482,908 bp from pter
End:
25,486,705 bp from pter
Size:
3,798 bases
Orientation:
Plus strand

Genomic View for CSPG4P1Y Gene

Genes around CSPG4P1Y on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSPG4P1Y Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSPG4P1Y Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSPG4P1Y Gene

No data available for Regulatory Elements for CSPG4P1Y Gene

Proteins for CSPG4P1Y Gene

Post-translational modifications for CSPG4P1Y Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSPG4P1Y Gene

Domains & Families for CSPG4P1Y Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSPG4P1Y Gene

Function for CSPG4P1Y Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSPG4P1Y Gene

Localization for CSPG4P1Y Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSPG4P1Y Gene

Pathways & Interactions for CSPG4P1Y Gene

SuperPathways for CSPG4P1Y Gene

No Data Available

Interacting Proteins for CSPG4P1Y Gene

Gene Ontology (GO) - Biological Process for CSPG4P1Y Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSPG4P1Y Gene

Transcripts for CSPG4P1Y Gene

mRNA/cDNA for CSPG4P1Y Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CSPG4P1Y Gene

No ASD Table

Relevant External Links for CSPG4P1Y Gene

GeneLoc Exon Structure for
CSPG4P1Y
ECgene alternative splicing isoforms for
CSPG4P1Y

Expression for CSPG4P1Y Gene

mRNA expression in normal human tissues for CSPG4P1Y Gene

NURSA nuclear receptor signaling pathways regulating expression of CSPG4P1Y Gene:

CSPG4P1Y

SOURCE GeneReport for Unigene cluster for CSPG4P1Y Gene:

Hs.514045
genes like me logo Genes that share expression patterns with CSPG4P1Y: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CSPG4P1Y Gene

Orthologs for CSPG4P1Y Gene

Evolution for CSPG4P1Y Gene

ENSEMBL:
Gene Tree for CSPG4P1Y (if available)
TreeFam:
Gene Tree for CSPG4P1Y (if available)

No data available for Orthologs for CSPG4P1Y Gene

Paralogs for CSPG4P1Y Gene

No data available for Paralogs for CSPG4P1Y Gene

Variants for CSPG4P1Y Gene

Sequence variations from dbSNP and Humsavar for CSPG4P1Y Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs111416284 -- 25,485,126(+) CAGAA(C/T)GGGAG intron-variant
rs112226274 -- 25,481,101(+) TCTTT(A/G)CCAAT downstream-variant-500B, upstream-variant-2KB
rs112933501 -- 25,486,098(+) GAGAC(A/G)GGAGG intron-variant
rs113469262 -- 25,484,896(+) AGCCT(C/G)GGGCT intron-variant
rs749591644 -- 25,481,402(+) GCCTG(C/T)GGAGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CSPG4P1Y Gene

Variant ID Type Subtype PubMed ID
esv3575148 CNV loss 25503493
esv3575157 CNV loss 25503493
esv3575178 CNV loss 25503493
esv3575179 CNV loss 25503493
esv3577652 CNV gain 25503493
nsv1076749 CNV duplication 25765185
nsv1077618 CNV duplication 25765185
nsv1110652 CNV duplication 24896259
nsv1115944 CNV duplication 24896259
nsv1129124 CNV duplication 24896259
nsv1140104 CNV duplication 24896259
nsv1151893 CNV duplication 26484159
nsv1153003 CNV duplication 26484159
nsv442825 CNV gain+loss 18776908
nsv442826 CNV gain+loss 18776908
nsv515231 CNV loss 21397061

Relevant External Links for CSPG4P1Y Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSPG4P1Y

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CSPG4P1Y Gene

Disorders for CSPG4P1Y Gene

Relevant External Links for CSPG4P1Y

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CSPG4P1Y

No disorders were found for CSPG4P1Y Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSPG4P1Y Gene

Publications for CSPG4P1Y Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 64

Products for CSPG4P1Y Gene

Sources for CSPG4P1Y Gene

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