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Aliases for CSPG4P1Y Gene

Aliases for CSPG4P1Y Gene

  • Chondroitin Sulfate Proteoglycan 4 Pseudogene 1, Y-Linked 2 3
  • Chondroitin Sulfate Proteoglycan 4-Like, Y-Linked Pseudogene 1 2 3
  • CSPG4LY 3 6
  • Chondroitin Sulfate Proteoglycan 4 Pseudogene, Y-Linked 1 3
  • Chondroitin Sulfate Proteoglycan 4 Pseudogene 1 2
  • CSPG4LYP1 3
  • CSPG4PY1 3
  • CSPG4P1 3

External Ids for CSPG4P1Y Gene

Previous Symbols for CSPG4P1Y Gene

  • CSPG4LYP1
  • CSPG4P1

Summaries for CSPG4P1Y Gene

Entrez Gene Summary for CSPG4P1Y Gene

  • There are two copies of this pseudogene within the P1 palindrome on chromosome Y. This record represents the more telomeric copy. [provided by RefSeq, Jul 2008]

GeneCards Summary for CSPG4P1Y Gene

CSPG4P1Y (Chondroitin Sulfate Proteoglycan 4 Pseudogene 1, Y-Linked) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSPG4P1Y Gene

Genomics for CSPG4P1Y Gene

Genomic Location for CSPG4P1Y Gene

Start:
25,482,908 bp from pter
End:
25,486,705 bp from pter
Size:
3,798 bases
Orientation:
Plus strand

Genomic View for CSPG4P1Y Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CSPG4P1Y Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSPG4P1Y Gene

No data available for Regulatory Elements for CSPG4P1Y Gene

Proteins for CSPG4P1Y Gene

Post-translational modifications for CSPG4P1Y Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSPG4P1Y Gene

Domains for CSPG4P1Y Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSPG4P1Y Gene

Function for CSPG4P1Y Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CSPG4P1Y Gene

Localization for CSPG4P1Y Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSPG4P1Y Gene

Pathways for CSPG4P1Y Gene

SuperPathways for CSPG4P1Y Gene

No Data Available

Interacting Proteins for CSPG4P1Y Gene

Gene Ontology (GO) - Biological Process for CSPG4P1Y Gene

None

No data available for Pathways by source for CSPG4P1Y Gene

Transcripts for CSPG4P1Y Gene

mRNA/cDNA for CSPG4P1Y Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CSPG4P1Y Gene

No ASD Table

Relevant External Links for CSPG4P1Y Gene

GeneLoc Exon Structure for
CSPG4P1Y
ECgene alternative splicing isoforms for
CSPG4P1Y

Expression for CSPG4P1Y Gene

mRNA expression in normal human tissues for CSPG4P1Y Gene

SOURCE GeneReport for Unigene cluster for CSPG4P1Y Gene Hs.514045

genes like me logo Genes that share expressions with CSPG4P1Y: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CSPG4P1Y Gene

Orthologs for CSPG4P1Y Gene

Evolution for CSPG4P1Y Gene

ENSEMBL:
Gene Tree for CSPG4P1Y (if available)
TreeFam:
Gene Tree for CSPG4P1Y (if available)

No data available for Orthologs for CSPG4P1Y Gene

Paralogs for CSPG4P1Y Gene

No data available for Paralogs for CSPG4P1Y Gene

Variants for CSPG4P1Y Gene

Sequence variations from dbSNP and Humsavar for CSPG4P1Y Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs111416284 -- 25,485,126(+) CAGAA(C/T)GGGAG intron-variant
rs112226274 -- 25,481,101(+) TCTTT(A/G)CCAAT upstream-variant-2KB
rs112933501 -- 25,486,098(+) GAGAC(A/G)GGAGG intron-variant
rs113469262 -- 25,484,896(+) AGCCT(C/G)GGGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CSPG4P1Y Gene

Variant ID Type Subtype PubMed ID
essv10843 CNV CNV 17122850
dgv2507e1 CNV Complex 17122850
nsv442825 CNV CNV 18776908
dgv2510e1 CNV Complex 17122850
nsv442826 CNV CNV 18776908
nsv515231 CNV Complex 21397061

Relevant External Links for CSPG4P1Y Gene

HapMap Linkage Disequilibrium report
CSPG4P1Y

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CSPG4P1Y Gene

Disorders for CSPG4P1Y Gene

No disorders were found for CSPG4P1Y Gene.

No data available for UniProtKB/Swiss-Prot for CSPG4P1Y Gene

Publications for CSPG4P1Y Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3

Products for CSPG4P1Y Gene

Sources for CSPG4P1Y Gene

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