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Aliases for CSNK2B Gene

Aliases for CSNK2B Gene

  • Casein Kinase 2 Beta 2 3
  • Casein Kinase 2, Beta Polypeptide 2 3 5
  • Protein G5a 3 4
  • CK II Beta 3 4
  • Phosvitin 3 4
  • CK2N 3 4
  • G5A 3 4
  • Casein Kinase II B Subunit Splicing Isoform 132 3
  • Casein Kinase II B Subunit Splicing Isoform 247 3
  • Casein Kinase II B Subunit Splicing Isoform 318 3
  • Casein Kinase II B Subunit Splicing Isoform 660 3
  • Casein Kinase II B Subunit Splicing Isoform 806 3
  • Chimera CSNK2B-LY6G5B Splicing Isoform 1072 3
  • Chimera CSNK2B-LY6G5B Splicing Isoform 1103 3
  • Chimera CSNK2B-LY6G5B Splicing Isoform 532 3
  • Chimera CSNK2B-LY6G5B Splicing Isoform 560 3
  • Chimera CSNK2B-LY6G5B Splicing Isoform 562 3
  • Alternative Name: G5a, Phosvitin 3
  • Casein Kinase II Beta Subunit 3
  • CSNK2B-LY6G5B-1072 3
  • CSNK2B-LY6G5B-1103 3
  • CSNK2B-LY6G5B-532 3
  • CSNK2B-LY6G5B-560 3
  • CSNK2B-LY6G5B-562 3
  • CSK2B 3
  • CK2B 3

External Ids for CSNK2B Gene

Previous GeneCards Identifiers for CSNK2B Gene

  • GC06P031698
  • GC06P031403
  • GC06P031737
  • GC06P031741
  • GC06Pf31767
  • GC06P031633
  • GC06P031419
  • GC06P031666
  • GC06P031711

Summaries for CSNK2B Gene

Entrez Gene Summary for CSNK2B Gene

  • This gene encodes the beta subunit of casein kinase II, a ubiquitous protein kinase which regulates metabolic pathways, signal transduction, transcription, translation, and replication. The enzyme is composed of three subunits, alpha, alpha prime and beta, which form a tetrameric holoenzyme. The alpha and alpha prime subunits are catalytic, while the beta subunit serves regulatory functions. The enzyme localizes to the endoplasmic reticulum and the Golgi apparatus. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2013]

GeneCards Summary for CSNK2B Gene

CSNK2B (Casein Kinase 2 Beta) is a Protein Coding gene. Diseases associated with CSNK2B include orchitis. Among its related pathways are Gene Expression and Signaling by GPCR. GO annotations related to this gene include identical protein binding and receptor binding.

UniProtKB/Swiss-Prot for CSNK2B Gene

  • Participates in Wnt signaling (By similarity). Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Tocris Summary for CSNK2B Gene

  • Casein kinase II (CK2) is a constitutively active, ubiquitously expressed serine/threonine protein kinase thought to have a regulatory function in cell proliferation, differentiation and apoptosis. CK2 functions as a tetrameric complex with 2 regulatory and 2 catalytic subunits.

Gene Wiki entry for CSNK2B Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSNK2B Gene

Genomics for CSNK2B Gene

Regulatory Elements for CSNK2B Gene

Promoters for CSNK2B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CSNK2B on UCSC Golden Path with GeneCards custom track

Genomic Location for CSNK2B Gene

Chromosome:
6
Start:
31,665,236 bp from pter
End:
31,670,343 bp from pter
Size:
5,108 bases
Orientation:
Plus strand

Genomic View for CSNK2B Gene

Genes around CSNK2B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSNK2B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSNK2B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for CSNK2B Gene

  • Protein details for CSNK2B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P67870-CSK2B_HUMAN
    Recommended name:
    Casein kinase II subunit beta
    Protein Accession:
    P67870
    Secondary Accessions:
    • B0UXA9
    • P07312
    • P13862
    • Q4VX47

    Protein attributes for CSNK2B Gene

    Size:
    215 amino acids
    Molecular mass:
    24942 Da
    Quaternary structure:
    • Tetramer composed of an alpha subunit, an alpha subunit and two beta subunits. The beta subunit dimerization is mediated by zinc ions. Interacts with TCTEX1D3 (By similarity). Interacts with CD163. Also component of a CK2-SPT16-SSRP1 complex composed of SSRP1, SUPT16H, CSNK2A1, CSNK2A2 and CSNK2B, the complex associating following UV irradiation. Interacts with MUSK; mediates phosphorylation of MUSK by CK2. Interacts with FGF1; this interaction is increased in the presence of FIBP, suggesting a possible cooperative interaction between CSNKB and FIBP in binding to FGF1.
    SequenceCaution:
    • Sequence=CAI18393.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for CSNK2B Gene

neXtProt entry for CSNK2B Gene

Proteomics data for CSNK2B Gene at MOPED

Post-translational modifications for CSNK2B Gene

  • Phosphorylated by alpha subunit.
  • Ubiquitination at Lys 33, Lys 100, Lys 134, Lys 139, Lys 191, and Lys 212
  • Modification sites at PhosphoSitePlus

Other Protein References for CSNK2B Gene

Antibody Products

  • R&D Systems Antibodies for CSNK2B (Casein Kinase 2 beta)

No data available for DME Specific Peptides for CSNK2B Gene

Domains & Families for CSNK2B Gene

Graphical View of Domain Structure for InterPro Entry

P67870

UniProtKB/Swiss-Prot:

CSK2B_HUMAN :
  • Belongs to the casein kinase 2 subunit beta family.
Family:
  • Belongs to the casein kinase 2 subunit beta family.
genes like me logo Genes that share domains with CSNK2B: view

Function for CSNK2B Gene

Molecular function for CSNK2B Gene

GENATLAS Biochemistry:
caseine kinase II,beta unit,likely involved in regulation of cell growth
UniProtKB/Swiss-Prot Function:
Participates in Wnt signaling (By similarity). Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Gene Ontology (GO) - Molecular Function for CSNK2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003682 chromatin binding IDA 25519132
GO:0005102 receptor binding IPI 19233263
genes like me logo Genes that share ontologies with CSNK2B: view
genes like me logo Genes that share phenotypes with CSNK2B: view

Animal Models for CSNK2B Gene

MGI Knock Outs for CSNK2B:

Animal Model Products

miRNA Products

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for CSNK2B Gene

Localization for CSNK2B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CSNK2B Gene COMPARTMENTS Subcellular localization image for CSNK2B gene
Compartment Confidence
cytosol 3
extracellular 2
nucleus 1

Gene Ontology (GO) - Cellular Components for CSNK2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005956 protein kinase CK2 complex IEA,NAS 2666134
GO:0070062 extracellular exosome IDA 20458337
genes like me logo Genes that share ontologies with CSNK2B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CSNK2B Gene

Pathways & Interactions for CSNK2B Gene

genes like me logo Genes that share pathways with CSNK2B: view

Pathways by source for CSNK2B Gene

SIGNOR curated interactions for CSNK2B Gene

Inactivates:
Is activated by:

Gene Ontology (GO) - Biological Process for CSNK2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006457 protein folding TAS --
GO:0006468 protein phosphorylation TAS 1856204
GO:0007165 signal transduction TAS 2513884
GO:0007411 axon guidance TAS --
GO:0016055 Wnt signaling pathway IEA --
genes like me logo Genes that share ontologies with CSNK2B: view

Drugs & Compounds for CSNK2B Gene

(15) Drugs for CSNK2B Gene - From: Novoseek, HMDB, ApexBio, and Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Adenosine triphosphate Approved Nutra 0
Ellagic acid Investigational Pharma Casein kinase 2 (CK2) inhibitor, Selective inhibitor of CK2. Also inhibits glutathione S-transferase 0
TTP 22 Pharma CK2 inhibitor, High affinity, selective CK2 inhibitor 0
CX-4945 (Silmitasertib) Pharma CK2 inhibitor 0

(14) Additional Compounds for CSNK2B Gene - From: HMDB, Novoseek, and Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
TBB
17374-26-4
TBCA
934358-00-6
TMCB
905105-89-7
genes like me logo Genes that share compounds with CSNK2B: view

Transcripts for CSNK2B Gene

mRNA/cDNA for CSNK2B Gene

(2) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CSNK2B Gene

Casein kinase 2, beta polypeptide:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CSNK2B Gene

No ASD Table

Relevant External Links for CSNK2B Gene

GeneLoc Exon Structure for
CSNK2B
ECgene alternative splicing isoforms for
CSNK2B

Expression for CSNK2B Gene

mRNA expression in normal human tissues for CSNK2B Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CSNK2B Gene



SOURCE GeneReport for Unigene cluster for CSNK2B Gene Hs.73527

genes like me logo Genes that share expression patterns with CSNK2B: view

Protein tissue co-expression partners for CSNK2B Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CSNK2B Gene

Orthologs for CSNK2B Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CSNK2B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CSNK2B 35
  • 99.84 (n)
  • 100 (a)
CSNK2B 36
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CSNK2B 36
  • 100 (a)
OneToOne
CSNK2B 35
  • 95.04 (n)
  • 100 (a)
dog
(Canis familiaris)
Mammalia CSNK2B 35
  • 95.81 (n)
  • 100 (a)
CSNK2B 36
  • 66 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Csnk2b 16
Csnk2b 35
  • 93.8 (n)
  • 100 (a)
Csnk2b 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CSNK2B 36
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 43 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Csnk2b 35
  • 94.57 (n)
  • 100 (a)
lizard
(Anolis carolinensis)
Reptilia CSNK2B 36
  • 92 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.1152 35
tropical clawed frog
(Silurana tropicalis)
Amphibia csnk2b 35
  • 81.86 (n)
  • 99.53 (a)
Str.7978 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.293 35
zebrafish
(Danio rerio)
Actinopterygii ck2b 35
  • 85.12 (n)
  • 99.07 (a)
ck2b 36
  • 99 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CkIIbeta 35
  • 74.88 (n)
  • 88.37 (a)
CkIIbgr 37
  • 89 (a)
CkIIbgr2 37
  • 65 (a)
Ssl 37
  • 48 (a)
Ste12DOR 37
  • 42 (a)
CkIIbeta 36
  • 80 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea kin-10 37
  • 81 (a)
T01G9.6a 37
  • 81 (a)
kin-10 36
  • 70 (a)
OneToMany
kin-10 35
  • 69.83 (n)
  • 81 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ACR087C 35
  • 55.72 (n)
  • 46.38 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes CKB2 35
  • 52.2 (n)
  • 47.8 (a)
CKB2 36
  • 38 (a)
OneToMany
CKB2 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E21869g 35
  • 50.33 (n)
  • 47 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.1389 35
thale cress
(Arabidopsis thaliana)
eudicotyledons CKB4 35
  • 56.42 (n)
  • 57.81 (a)
corn
(Zea mays)
Liliopsida Zm.808 35
rice
(Oryza sativa)
Liliopsida Os.11223 35
Os07g0495100 35
  • 56.6 (n)
  • 59.37 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU02754 35
  • 57.59 (n)
  • 52.88 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes ckb1 35
  • 56.87 (n)
  • 61.34 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7419 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4732 36
  • 88 (a)
OneToMany
Species with no ortholog for CSNK2B:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CSNK2B Gene

ENSEMBL:
Gene Tree for CSNK2B (if available)
TreeFam:
Gene Tree for CSNK2B (if available)

Paralogs for CSNK2B Gene

genes like me logo Genes that share paralogs with CSNK2B: view

No data available for Paralogs for CSNK2B Gene

Variants for CSNK2B Gene

Sequence variations from dbSNP and Humsavar for CSNK2B Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs150219524 -- 31,668,546(+) GAAGA(A/G)CTGGA reference, synonymous-codon
rs181938119 -- 31,668,405(+) CCCAT(A/G)CCCAG intron-variant
rs149642695 -- 31,668,306(+) AGTTG(A/G)GAGGG intron-variant
rs190709004 -- 31,668,844(+) GGAGA(C/G)AGACC intron-variant
rs537740988 -- 31,668,331(+) AGGCT(A/G)AAAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CSNK2B Gene

Variant ID Type Subtype PubMed ID
nsv830627 CNV Loss 17160897
nsv884418 CNV Gain 21882294

Variation tolerance for CSNK2B Gene

Residual Variation Intolerance Score: 49.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.58; 12.40% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CSNK2B Gene

HapMap Linkage Disequilibrium report
CSNK2B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CSNK2B Gene

Disorders for CSNK2B Gene

MalaCards: The human disease database

(1) MalaCards diseases for CSNK2B Gene - From: DISEASES

Disorder Aliases PubMed IDs
orchitis
  • inflammation of testis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CSNK2B

Genetic Association Database (GAD)
CSNK2B
Human Genome Epidemiology (HuGE) Navigator
CSNK2B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CSNK2B
genes like me logo Genes that share disorders with CSNK2B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CSNK2B Gene

Publications for CSNK2B Gene

  1. Structure of the gene encoding human casein kinase II subunit beta. (PMID: 1856204) Voss A. … Pyerin W. (J. Biol. Chem. 1991) 3 4 23 67
  2. Assignment of the human casein kinase II beta-subunit gene to 6p12----p21. (PMID: 2276748) Yang-Feng T.L. … Canaani D. (Genomics 1990) 2 3 23
  3. The human vaccinia-related kinase 1 (VRK1) phosphorylates threonine- 18 within the mdm-2 binding site of the p53 tumour suppressor protein. (PMID: 10951572) Lopez-Borges S. … Lazo P.A. (Oncogene 2000) 3 23
  4. Affinity properties of phosvitin: interaction of phosvitin with serine hydroxymethyl transferase. (PMID: 10549165) Lakhey H.V. … Ramadoss C.S. (Indian J. Biochem. Biophys. 1999) 3 23
  5. Fine mapping of the autosomal recessive polycystic kidney disease locus (PKHD1) and the genes MUT, RDS, CSNK2 beta, and GSTA1 at 6p21.1-p12. (PMID: 9503014) MA1cher G. … Zerres K. (Genomics 1998) 2 3

Products for CSNK2B Gene

Sources for CSNK2B Gene

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