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CSNK1G2-AS1 Gene(RNA Gene)

CSNK1G2 Antisense RNA 1

GCID:
GC19M001953
GIFtS:
28
Genes Participants
UDN Logo

Aliases for CSNK1G2-AS1 Gene

Subcategory (RNA class) for CSNK1G2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CSNK1G2-AS1 Gene

  • CSNK1G2 Antisense RNA 1 2 3 4 5
  • CSNK1G2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C19orf34 3 4
  • Chromosome 19 Open Reading Frame 34 2
  • CSNK1G2 Antisense Gene Protein 1 4

External Ids for CSNK1G2-AS1 Gene

Previous HGNC Symbols for CSNK1G2-AS1 Gene

  • C19orf34

Summaries for CSNK1G2-AS1 Gene

GeneCards Summary for CSNK1G2-AS1 Gene

CSNK1G2-AS1 (CSNK1G2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSNK1G2-AS1 Gene

Genomics for CSNK1G2-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for CSNK1G2-AS1 Gene

Enhancers for CSNK1G2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G001939 1.8 FANTOM5 ENCODE dbSUPER 8.4 +12.6 12569 5.4 HDGF CREB3L1 MLX AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF766 KLF16 CSNK1G2 ZNF555 SF3A2 BTBD2 CSNK1G2-AS1 C19orf35 ENSG00000267283 REXO1 LOC105372239
GH19G001948 0.8 ENCODE dbSUPER 16 +5.8 5760 1.0 KLF1 ZBTB33 ZNF600 ZNF2 RBFOX2 BTBD2 CSNK1G2-AS1 CSNK1G2
GH19G001947 0.8 ENCODE dbSUPER 14.4 +6.6 6580 0.3 HIC1 POLR2A ZNF600 RBFOX2 CSNK1G2-AS1 BTBD2 KLF16 CSNK1G2
GH19G001935 1.5 Ensembl ENCODE dbSUPER 7.2 +18.6 18611 1.7 HDGF FOXA2 ARNT ARID4B YBX1 ZNF2 ZNF48 CBX5 ZMIZ1 ZNF263 MKNK2 BTBD2 KLF16 REXO1 ATP8B3 CSNK1G2-AS1 LOC105372238 GC19P001933
GH19G001979 0.6 ENCODE 13.1 -26.2 -26174 2.5 CTCF MNT HIC1 NFIC SCRT2 ZNF600 ZBTB33 KLF8 HNRNPL CSNK1G2-AS1 BTBD2 CSNK1G2 MKNK2 ENSG00000267283 GC19P001982
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CSNK1G2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CSNK1G2-AS1 Gene

Chromosome:
19
Start:
1,952,527 bp from pter
End:
1,954,586 bp from pter
Size:
2,060 bases
Orientation:
Minus strand

Genomic View for CSNK1G2-AS1 Gene

Genes around CSNK1G2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSNK1G2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSNK1G2-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CSNK1G2-AS1 Gene

Proteins for CSNK1G2-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CSNK1G2-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NCQ2-CNAS1_HUMAN
    Recommended name:
    Uncharacterized protein CSNK1G2-AS1
    Protein Accession:
    Q8NCQ2

    Protein attributes for CSNK1G2-AS1 Gene

    Size:
    148 amino acids
    Molecular mass:
    16070 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CSNK1G2-AS1 Gene

Protein Expression for CSNK1G2-AS1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for CSNK1G2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSNK1G2-AS1 Gene

Domains & Families for CSNK1G2-AS1 Gene

Protein Domains for CSNK1G2-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CSNK1G2-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSNK1G2-AS1 Gene

Function for CSNK1G2-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for CSNK1G2-AS1 Gene

GenomeRNAi human phenotypes for CSNK1G2-AS1:
genes like me logo Genes that share phenotypes with CSNK1G2-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSNK1G2-AS1 Gene

Localization for CSNK1G2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSNK1G2-AS1 Gene

Pathways & Interactions for CSNK1G2-AS1 Gene

SuperPathways for CSNK1G2-AS1 Gene

PathCards logo More details on SuperPathways for CSNK1G2-AS1
No Data Available

Interacting Proteins for CSNK1G2-AS1 Gene

Gene Ontology (GO) - Biological Process for CSNK1G2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSNK1G2-AS1 Gene

Drugs & Compounds for CSNK1G2-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CSNK1G2-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CSNK1G2-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CSNK1G2-AS1 Gene

CSNK1G2 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CSNK1G2-AS1 Gene

No ASD Table

Relevant External Links for CSNK1G2-AS1 Gene

GeneLoc Exon Structure for
CSNK1G2-AS1
ECgene alternative splicing isoforms for
CSNK1G2-AS1

Expression for CSNK1G2-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CSNK1G2-AS1 Gene

mRNA expression in normal human tissues for CSNK1G2-AS1 Gene
mRNA expression by GTEx for CSNK1G2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CSNK1G2-AS1 Gene

This gene is overexpressed in Testis (x36.0).

Protein differential expression in normal tissues from HIPED for CSNK1G2-AS1 Gene

This gene is overexpressed in Fetal Brain (40.9) and Islet of Langerhans (28.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CSNK1G2-AS1 Gene



Protein tissue co-expression partners for CSNK1G2-AS1 Gene

SOURCE GeneReport for Unigene cluster for CSNK1G2-AS1 Gene:

Hs.374717
genes like me logo Genes that share expression patterns with CSNK1G2-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSNK1G2-AS1 Gene

Orthologs for CSNK1G2-AS1 Gene

Evolution for CSNK1G2-AS1 Gene

ENSEMBL:
Gene Tree for CSNK1G2-AS1 (if available)
TreeFam:
Gene Tree for CSNK1G2-AS1 (if available)

No data available for Orthologs for CSNK1G2-AS1 Gene

Paralogs for CSNK1G2-AS1 Gene

No data available for Paralogs for CSNK1G2-AS1 Gene

Variants for CSNK1G2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CSNK1G2-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000019331 -- 1,953,753(+) AGCTG(C/G)CATTG intron-variant, upstream-variant-2KB
rs1000107196 -- 1,953,597(+) TGTCC(A/G)GTGCT intron-variant, upstream-variant-2KB
rs1000897367 -- 1,956,142(+) TGAGA(A/G)GTGAT intron-variant, upstream-variant-2KB
rs1001008917 -- 1,952,869(+) CCCTC(-/GTG)GGGAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001018818 -- 1,952,679(+) ACAGG(C/T)CTGAC intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CSNK1G2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv32942 CNV gain+loss 17666407
esv3643414 CNV gain 21293372
esv3893156 CNV loss 25118596
nsv1160561 CNV deletion 26073780
nsv470107 CNV loss 18288195
nsv953942 CNV deletion 24416366

Relevant External Links for CSNK1G2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSNK1G2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CSNK1G2-AS1 Gene

Disorders for CSNK1G2-AS1 Gene

Relevant External Links for CSNK1G2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CSNK1G2-AS1

No disorders were found for CSNK1G2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSNK1G2-AS1 Gene

Publications for CSNK1G2-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3 64

Products for CSNK1G2-AS1 Gene

Sources for CSNK1G2-AS1 Gene

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