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Aliases for CSNK1G2-AS1 Gene

Subcategory (RNA class) for CSNK1G2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CSNK1G2-AS1 Gene

  • CSNK1G2 Antisense RNA 1 2 3 4 5
  • CSNK1G2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C19orf34 3 4
  • Chromosome 19 Open Reading Frame 34 2
  • CSNK1G2 Antisense Gene Protein 1 4

External Ids for CSNK1G2-AS1 Gene

Previous HGNC Symbols for CSNK1G2-AS1 Gene

  • C19orf34

Summaries for CSNK1G2-AS1 Gene

GeneCards Summary for CSNK1G2-AS1 Gene

CSNK1G2-AS1 (CSNK1G2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSNK1G2-AS1 Gene

Genomics for CSNK1G2-AS1 Gene

Regulatory Elements for CSNK1G2-AS1 Gene

Enhancers for CSNK1G2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F001939 1.5 FANTOM5 ENCODE 8.4 +12.6 12569 5.4 HDGF MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF143 KLF16 CSNK1G2 SF3A2 BTBD2 CSNK1G2-AS1 C19orf35 ENSG00000267283 REXO1 LOC105372239 MKNK2
GH19F001948 0.7 Ensembl ENCODE 16 +5.8 5760 1.0 KLF1 ZNF600 ZNF2 BTBD2 CSNK1G2-AS1 CSNK1G2
GH19F001935 1.2 Ensembl ENCODE 7.2 +18.7 18682 1.8 HDGF ARNT ARID4B YBX1 ZNF2 ZNF48 CBX5 ZMIZ1 ZNF263 ZNF202 SF3A2 LOC100288123 TMEM259 CIRBP MKNK2 BTBD2 KLF16 MIR1909 REXO1 ATP8B3
GH19F001979 0.6 ENCODE 13.1 -26.2 -26174 2.5 HIC1 SCRT2 ZBTB33 ZNF600 MNT KLF8 CSNK1G2-AS1 BTBD2 CSNK1G2 MKNK2 ENSG00000267283 GC19P001982
GH19F001947 0.5 ENCODE 14.4 +6.6 6580 0.3 HIC1 POLR2A ZNF600 CSNK1G2-AS1 BTBD2 KLF16 CSNK1G2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CSNK1G2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CSNK1G2-AS1 Gene

Chromosome:
19
Start:
1,952,527 bp from pter
End:
1,954,586 bp from pter
Size:
2,060 bases
Orientation:
Minus strand

Genomic View for CSNK1G2-AS1 Gene

Genes around CSNK1G2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSNK1G2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSNK1G2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSNK1G2-AS1 Gene

Proteins for CSNK1G2-AS1 Gene

  • Protein details for CSNK1G2-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NCQ2-CNAS1_HUMAN
    Recommended name:
    Uncharacterized protein CSNK1G2-AS1
    Protein Accession:
    Q8NCQ2

    Protein attributes for CSNK1G2-AS1 Gene

    Size:
    148 amino acids
    Molecular mass:
    16070 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CSNK1G2-AS1 Gene

Post-translational modifications for CSNK1G2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSNK1G2-AS1 Gene

Domains & Families for CSNK1G2-AS1 Gene

Protein Domains for CSNK1G2-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CSNK1G2-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSNK1G2-AS1 Gene

Function for CSNK1G2-AS1 Gene

Phenotypes for CSNK1G2-AS1 Gene

genes like me logo Genes that share phenotypes with CSNK1G2-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSNK1G2-AS1 Gene

Localization for CSNK1G2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSNK1G2-AS1 Gene

Pathways & Interactions for CSNK1G2-AS1 Gene

SuperPathways for CSNK1G2-AS1 Gene

No Data Available

Interacting Proteins for CSNK1G2-AS1 Gene

Gene Ontology (GO) - Biological Process for CSNK1G2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSNK1G2-AS1 Gene

Transcripts for CSNK1G2-AS1 Gene

mRNA/cDNA for CSNK1G2-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CSNK1G2-AS1 Gene

CSNK1G2 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CSNK1G2-AS1 Gene

No ASD Table

Relevant External Links for CSNK1G2-AS1 Gene

GeneLoc Exon Structure for
CSNK1G2-AS1
ECgene alternative splicing isoforms for
CSNK1G2-AS1

Expression for CSNK1G2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CSNK1G2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CSNK1G2-AS1 Gene

This gene is overexpressed in Testis (x36.0).

Protein differential expression in normal tissues from HIPED for CSNK1G2-AS1 Gene

This gene is overexpressed in Fetal Brain (40.9) and Islet of Langerhans (28.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CSNK1G2-AS1 Gene



Protein tissue co-expression partners for CSNK1G2-AS1 Gene

SOURCE GeneReport for Unigene cluster for CSNK1G2-AS1 Gene:

Hs.374717
genes like me logo Genes that share expression patterns with CSNK1G2-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CSNK1G2-AS1 Gene

Orthologs for CSNK1G2-AS1 Gene

Evolution for CSNK1G2-AS1 Gene

ENSEMBL:
Gene Tree for CSNK1G2-AS1 (if available)
TreeFam:
Gene Tree for CSNK1G2-AS1 (if available)

No data available for Orthologs for CSNK1G2-AS1 Gene

Paralogs for CSNK1G2-AS1 Gene

No data available for Paralogs for CSNK1G2-AS1 Gene

Variants for CSNK1G2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CSNK1G2-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10407147 -- 1,952,567(+) gatct(C/T)cccac intron-variant, nc-transcript-variant
rs11084921 -- 1,952,281(+) ACTGA(C/T)GATGC intron-variant, downstream-variant-500B
rs11084922 -- 1,956,533(+) GACCA(C/T)GCATC intron-variant, upstream-variant-2KB
rs111380768 -- 1,955,943(+) ACCAC(C/T)GTATC intron-variant, upstream-variant-2KB
rs111464223 -- 1,954,191(+) TCCTG(C/T)GCCCC intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CSNK1G2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv953942 CNV deletion 24416366
nsv470107 CNV loss 18288195
nsv1160561 CNV deletion 26073780
esv3893156 CNV loss 25118596
esv3643414 CNV gain 21293372
esv32942 CNV gain+loss 17666407

Relevant External Links for CSNK1G2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSNK1G2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CSNK1G2-AS1 Gene

Disorders for CSNK1G2-AS1 Gene

Relevant External Links for CSNK1G2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CSNK1G2-AS1

No disorders were found for CSNK1G2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSNK1G2-AS1 Gene

Publications for CSNK1G2-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3 64

Products for CSNK1G2-AS1 Gene

Sources for CSNK1G2-AS1 Gene

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