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Aliases for CSN1S2BP Gene

Aliases for CSN1S2BP Gene

  • Casein Alpha S2-Like B, Pseudogene 2 3
  • Casein Alpha S2-Like B 2
  • CSN1S2B 3

External Ids for CSN1S2BP Gene

Previous HGNC Symbols for CSN1S2BP Gene

  • CSN1S2B

Previous GeneCards Identifiers for CSN1S2BP Gene

  • GC04P070999

Summaries for CSN1S2BP Gene

Entrez Gene Summary for CSN1S2BP Gene

  • This locus is found in a cluster of casein genes, similar to other mammals. In human, the potential open reading frame that matches the homologous protein from other species is prematurely truncated shortly after the signal peptide. Therefore, this locus appears to be a pseudogene. [provided by RefSeq, Feb 2010]

GeneCards Summary for CSN1S2BP Gene

CSN1S2BP (Casein Alpha S2-Like B, Pseudogene) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSN1S2BP Gene

Genomics for CSN1S2BP Gene

Genomic Location for CSN1S2BP Gene

Start:
70,133,604 bp from pter
End:
70,146,704 bp from pter
Size:
13,101 bases
Orientation:
Plus strand

Genomic View for CSN1S2BP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CSN1S2BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSN1S2BP Gene

No data available for Regulatory Elements for CSN1S2BP Gene

Proteins for CSN1S2BP Gene

Post-translational modifications for CSN1S2BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSN1S2BP Gene

Domains for CSN1S2BP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSN1S2BP Gene

Function for CSN1S2BP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CSN1S2BP Gene

Localization for CSN1S2BP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSN1S2BP Gene

Pathways for CSN1S2BP Gene

SuperPathways for CSN1S2BP Gene

No Data Available

Interacting Proteins for CSN1S2BP Gene

Gene Ontology (GO) - Biological Process for CSN1S2BP Gene

None

No data available for Pathways by source for CSN1S2BP Gene

Transcripts for CSN1S2BP Gene

mRNA/cDNA for CSN1S2BP Gene

(1) Additional mRNA sequences :

Unigene Clusters for CSN1S2BP Gene

Casein alpha s2-like B, pseudogene:
Representative Sequences:

miRNA Products

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CSN1S2BP Gene

No ASD Table

Relevant External Links for CSN1S2BP Gene

GeneLoc Exon Structure for
CSN1S2BP
ECgene alternative splicing isoforms for
CSN1S2BP

Expression for CSN1S2BP Gene

SOURCE GeneReport for Unigene cluster for CSN1S2BP Gene Hs.729824

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CSN1S2BP Gene

Orthologs for CSN1S2BP Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for CSN1S2BP Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Csn1s2b 16
Species with no ortholog for CSN1S2BP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for CSN1S2BP Gene

Paralogs for CSN1S2BP Gene

No data available for Paralogs for CSN1S2BP Gene

Variants for CSN1S2BP Gene

Sequence variations from dbSNP and Humsavar for CSN1S2BP Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs777391 -- 70,139,684(-) TTGAA(C/T)GAATG intron-variant
rs777392 -- 70,136,045(-) TTCCT(A/T)AAAAA intron-variant
rs777393 -- 70,134,553(-) TAAGT(A/G)TTCTA intron-variant
rs777394 -- 70,133,959(-) ACACA(C/G)GAAGC intron-variant
rs777395 -- 70,133,742(-) ATACA(A/G)TTCGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CSN1S2BP Gene

Variant ID Type Subtype PubMed ID
dgv5629n71 CNV Loss 21882294
dgv5630n71 CNV Loss 21882294
nsv517703 CNV Loss 19592680
nsv461553 CNV Loss 19166990
nsv829963 CNV Gain 17160897

Relevant External Links for CSN1S2BP Gene

HapMap Linkage Disequilibrium report
CSN1S2BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CSN1S2BP Gene

Disorders for CSN1S2BP Gene

No disorders were found for CSN1S2BP Gene.

No data available for UniProtKB/Swiss-Prot for CSN1S2BP Gene

Publications for CSN1S2BP Gene

  1. Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins. (PMID: 13679022) Rijnkels M. … Rosen J.M. (Genomics 2003) 2 3
  2. Multispecies comparison of the casein gene loci and evolution of casein gene family. (PMID: 12751895) Rijnkels M. (J Mammary Gland Biol Neoplasia 2002) 3

Products for CSN1S2BP Gene

Sources for CSN1S2BP Gene

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