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Aliases for CSN1S2BP Gene

Aliases for CSN1S2BP Gene

  • Casein Alpha S2-Like B, Pseudogene 2 3
  • Casein Alpha S2-Like B 2
  • CSN1S2B 3

External Ids for CSN1S2BP Gene

Previous HGNC Symbols for CSN1S2BP Gene

  • CSN1S2B

Previous GeneCards Identifiers for CSN1S2BP Gene

  • GC04P070999

Summaries for CSN1S2BP Gene

Entrez Gene Summary for CSN1S2BP Gene

  • This locus is found in a cluster of casein genes, similar to other mammals. In human, the potential open reading frame that matches the homologous protein from other species is prematurely truncated shortly after the signal peptide. Therefore, this locus appears to be a pseudogene. [provided by RefSeq, Feb 2010]

GeneCards Summary for CSN1S2BP Gene

CSN1S2BP (Casein Alpha S2-Like B, Pseudogene) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSN1S2BP Gene

Genomics for CSN1S2BP Gene

Genomic Location for CSN1S2BP Gene

Chromosome:
4
Start:
70,133,604 bp from pter
End:
70,146,704 bp from pter
Size:
13,101 bases
Orientation:
Plus strand

Genomic View for CSN1S2BP Gene

Genes around CSN1S2BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSN1S2BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSN1S2BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSN1S2BP Gene

No data available for Regulatory Elements for CSN1S2BP Gene

Proteins for CSN1S2BP Gene

Post-translational modifications for CSN1S2BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSN1S2BP Gene

Domains & Families for CSN1S2BP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSN1S2BP Gene

Function for CSN1S2BP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSN1S2BP Gene

Localization for CSN1S2BP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSN1S2BP Gene

Pathways & Interactions for CSN1S2BP Gene

SuperPathways for CSN1S2BP Gene

No Data Available

Interacting Proteins for CSN1S2BP Gene

Gene Ontology (GO) - Biological Process for CSN1S2BP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSN1S2BP Gene

Drugs & Compounds for CSN1S2BP Gene

No Compound Related Data Available

Transcripts for CSN1S2BP Gene

mRNA/cDNA for CSN1S2BP Gene

(1) Additional mRNA sequences :

Unigene Clusters for CSN1S2BP Gene

Casein alpha s2-like B, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CSN1S2BP Gene

No ASD Table

Relevant External Links for CSN1S2BP Gene

GeneLoc Exon Structure for
CSN1S2BP
ECgene alternative splicing isoforms for
CSN1S2BP

Expression for CSN1S2BP Gene

NURSA nuclear receptor signaling pathways regulating expression of CSN1S2BP Gene:

CSN1S2BP

SOURCE GeneReport for Unigene cluster for CSN1S2BP Gene:

Hs.729824
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSN1S2BP Gene

Orthologs for CSN1S2BP Gene

No data available for Orthologs and Evolution for CSN1S2BP Gene

Paralogs for CSN1S2BP Gene

No data available for Paralogs for CSN1S2BP Gene

Variants for CSN1S2BP Gene

Sequence variations from dbSNP and Humsavar for CSN1S2BP Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000038144 -- 70,137,518(+) TCAGT(C/T)AGTGG intron-variant
rs1000073648 -- 70,142,743(+) TGTTA(A/C)AAAAG intron-variant
rs1000089955 -- 70,137,226(+) TTGCC(A/G)ATAAT intron-variant
rs1000117121 -- 70,135,946(+) CCTAG(C/T)TTGAT intron-variant
rs1000142245 -- 70,144,074(+) AGGTG(G/T)TATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CSN1S2BP Gene

Variant ID Type Subtype PubMed ID
dgv5319n100 CNV loss 25217958
dgv9126n54 CNV loss 21841781
esv2760880 CNV loss 21179565
esv3600929 CNV loss 21293372
esv3600930 CNV loss 21293372
nsv1012495 CNV gain 25217958
nsv461553 CNV loss 19166990
nsv517703 CNV loss 19592680
nsv594643 CNV loss 21841781
nsv829963 CNV gain 17160897

Relevant External Links for CSN1S2BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSN1S2BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CSN1S2BP Gene

Disorders for CSN1S2BP Gene

Relevant External Links for CSN1S2BP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CSN1S2BP

No disorders were found for CSN1S2BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSN1S2BP Gene

Publications for CSN1S2BP Gene

  1. Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins. (PMID: 13679022) Rijnkels M. … Rosen J.M. (Genomics 2003) 2 3 64
  2. Multispecies comparison of the casein gene loci and evolution of casein gene family. (PMID: 12751895) Rijnkels M. (J Mammary Gland Biol Neoplasia 2002) 3 64

Products for CSN1S2BP Gene

Sources for CSN1S2BP Gene

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