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Aliases for CSN1S2AP Gene

Aliases for CSN1S2AP Gene

  • Casein Alpha S2-Like A, Pseudogene 2 3
  • Casein Alpha S2-Like A 2
  • Alpha-S2-Like Casein A 3
  • CSN1S2A 3

External Ids for CSN1S2AP Gene

Previous HGNC Symbols for CSN1S2AP Gene

  • CSN1S2A

Previous GeneCards Identifiers for CSN1S2AP Gene

  • GC04P070934
  • GC04P070935

Summaries for CSN1S2AP Gene

Entrez Gene Summary for CSN1S2AP Gene

  • This locus is the equivalent of casein gamma in mouse (GeneID 12993) and is found in a cluster of casein genes, similar to other mammals. In human, the potential open reading frame that matches the homologous protein from other species is prematurely truncated shortly after the signal peptide. Therefore, this locus appears to be a pseudogene. [provided by RefSeq, Jul 2008]

GeneCards Summary for CSN1S2AP Gene

CSN1S2AP (Casein Alpha S2-Like A, Pseudogene) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSN1S2AP Gene

Genomics for CSN1S2AP Gene

Genomic Location for CSN1S2AP Gene

70,067,386 bp from pter
70,085,290 bp from pter
17,905 bases
Plus strand

Genomic View for CSN1S2AP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CSN1S2AP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSN1S2AP Gene

No data available for Regulatory Elements for CSN1S2AP Gene

Proteins for CSN1S2AP Gene

Post-translational modifications for CSN1S2AP Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSN1S2AP Gene

Domains for CSN1S2AP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSN1S2AP Gene

Function for CSN1S2AP Gene

Phenotypes for CSN1S2AP Gene

genes like me logo Genes that share phenotypes with CSN1S2AP: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CSN1S2AP Gene

Localization for CSN1S2AP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CSN1S2AP Gene

Pathways for CSN1S2AP Gene

SuperPathways for CSN1S2AP Gene

No Data Available

Interacting Proteins for CSN1S2AP Gene

Gene Ontology (GO) - Biological Process for CSN1S2AP Gene


No data available for Pathways by source for CSN1S2AP Gene

Transcripts for CSN1S2AP Gene

mRNA/cDNA for CSN1S2AP Gene

(6) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CSN1S2AP Gene

Casein alpha s2-like A, pseudogene:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CSN1S2AP

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CSN1S2AP Gene

No ASD Table

Relevant External Links for CSN1S2AP Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CSN1S2AP Gene

mRNA expression in normal human tissues for CSN1S2AP Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CSN1S2AP Gene

This gene is overexpressed in Breast - Mammary Tissue (33.0) and Brain - Hypothalamus (16.2).

SOURCE GeneReport for Unigene cluster for CSN1S2AP Gene Hs.631945

genes like me logo Genes that share expressions with CSN1S2AP: view

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for CSN1S2AP Gene

Orthologs for CSN1S2AP Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for CSN1S2AP Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Csn1s2a 16
Species with no ortholog for CSN1S2AP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CSN1S2AP Gene

Gene Tree for CSN1S2AP (if available)
Gene Tree for CSN1S2AP (if available)

Paralogs for CSN1S2AP Gene

No data available for Paralogs for CSN1S2AP Gene

Variants for CSN1S2AP Gene

Sequence variations from dbSNP and Humsavar for CSN1S2AP Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs909035 -- 70,072,686(-) AAAAA(A/T)TTTTA intron-variant
rs909036 -- 70,072,607(-) ATTAG(A/G)TATAC intron-variant
rs1399812 -- 70,078,735(+) GTCTT(A/G)TCTTT intron-variant
rs1399813 -- 70,080,933(+) TGTAG(A/G)GAGCA intron-variant
rs1402686 -- 70,080,862(-) AGATG(A/G)AATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CSN1S2AP Gene

Variant ID Type Subtype PubMed ID
dgv5629n71 CNV Loss 21882294
dgv5630n71 CNV Loss 21882294
nsv879464 CNV Loss 21882294
nsv4378 CNV Insertion 18451855

Relevant External Links for CSN1S2AP Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CSN1S2AP Gene

Disorders for CSN1S2AP Gene

No disorders were found for CSN1S2AP Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CSN1S2AP Gene

Publications for CSN1S2AP Gene

  1. Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins. (PMID: 13679022) Rijnkels M. … Rosen J.M. (Genomics 2003) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Multispecies comparison of the casein gene loci and evolution of casein gene family. (PMID: 12751895) Rijnkels M. (J Mammary Gland Biol Neoplasia 2002) 3

Products for CSN1S2AP Gene

Sources for CSN1S2AP Gene

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