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Aliases for CSMD2-AS1 Gene

Subcategory (RNA class) for CSMD2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CSMD2-AS1 Gene

  • CSMD2 Antisense RNA 1 2 3 5

External Ids for CSMD2-AS1 Gene

Summaries for CSMD2-AS1 Gene

GeneCards Summary for CSMD2-AS1 Gene

CSMD2-AS1 (CSMD2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CSMD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSMD2-AS1 Gene

Genomics for CSMD2-AS1 Gene

Regulatory Elements for CSMD2-AS1 Gene

Enhancers for CSMD2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H033361 2.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 14.6 -504.3 -504252 7 PKNOX1 ATF1 ZNF493 ZFP64 ZNF133 ARID4B FEZF1 ZNF2 TCF12 ZNF766 ZBTB8A RBBP4 ZSCAN20 S100PBP BSDC1 PHC2 CSMD2-AS1 ZBTB8B ZNF362 CSMD2
GH01H033903 0.6 FANTOM5 11.1 +34.5 34467 0 ZNF316 JUND ATF3 MAFG HNF4A NFE2 YY1 HMGB4 CSMD2-AS1 GC01M033889 GC01P033929
GH01H033876 0.4 ENCODE 0.4 +8.3 8297 1 SCRT2 CSMD2 CSMD2-AS1 GC01M033889
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CSMD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CSMD2-AS1 Gene

Chromosome:
1
Start:
33,868,953 bp from pter
End:
33,885,458 bp from pter
Size:
16,506 bases
Orientation:
Plus strand

Genomic View for CSMD2-AS1 Gene

Genes around CSMD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSMD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSMD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSMD2-AS1 Gene

Proteins for CSMD2-AS1 Gene

Post-translational modifications for CSMD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSMD2-AS1 Gene

Domains & Families for CSMD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSMD2-AS1 Gene

Function for CSMD2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSMD2-AS1 Gene

Localization for CSMD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSMD2-AS1 Gene

Pathways & Interactions for CSMD2-AS1 Gene

SuperPathways for CSMD2-AS1 Gene

No Data Available

Interacting Proteins for CSMD2-AS1 Gene

Gene Ontology (GO) - Biological Process for CSMD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSMD2-AS1 Gene

Drugs & Compounds for CSMD2-AS1 Gene

No Compound Related Data Available

Transcripts for CSMD2-AS1 Gene

mRNA/cDNA for CSMD2-AS1 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CSMD2-AS1 Gene

No ASD Table

Relevant External Links for CSMD2-AS1 Gene

GeneLoc Exon Structure for
CSMD2-AS1
ECgene alternative splicing isoforms for
CSMD2-AS1

Expression for CSMD2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CSMD2-AS1 Gene

genes like me logo Genes that share expression patterns with CSMD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSMD2-AS1 Gene

Orthologs for CSMD2-AS1 Gene

Evolution for CSMD2-AS1 Gene

ENSEMBL:
Gene Tree for CSMD2-AS1 (if available)
TreeFam:
Gene Tree for CSMD2-AS1 (if available)

No data available for Orthologs for CSMD2-AS1 Gene

Paralogs for CSMD2-AS1 Gene

No data available for Paralogs for CSMD2-AS1 Gene

Variants for CSMD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CSMD2-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000075374 -- 33,882,641(+) ATACA(A/C)TTCAA intron-variant
rs1000212418 -- 33,867,277(+) CAGAC(A/C)ATTAG intron-variant, upstream-variant-2KB
rs1000253865 -- 33,875,642(+) TGGGG(A/G)AGGGT intron-variant
rs1000281532 -- 33,875,932(+) TGTCC(A/G)GCATT intron-variant
rs1000403211 -- 33,869,008(+) CGAGC(C/T)TGGCA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CSMD2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv34112 CNV loss 18971310
esv3585686 CNV gain 21293372
esv3585694 CNV loss 21293372
nsv834624 CNV loss 17160897

Relevant External Links for CSMD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSMD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CSMD2-AS1 Gene

Disorders for CSMD2-AS1 Gene

Relevant External Links for CSMD2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CSMD2-AS1

No disorders were found for CSMD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSMD2-AS1 Gene

Publications for CSMD2-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CSMD2-AS1 Gene

Sources for CSMD2-AS1 Gene

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