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Aliases & Descriptions for CSK
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 2.7.10.2 3 MGC117393 2
Descriptions C-SRC kinase 3 Protein-tyrosine kinase CYL 3 c-src tyrosine kinase 2
Search outside databases for aliases for CSK genePrevious GC identifers: GC15M070982 GC15M068251 GC15P072650 GC15P072790
Summaries for CSK (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: CSK_HUMAN, P41240 Function : Specifically phosphorylates 'Tyr-504' on LCK, which acts as a negative regulatory site.Can also act on the LYN and FYN kinases
Gene Wiki entry for CSK (C-src_tyrosine_kinase)
Genomic Location for CSK
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CSK gene Entrez Gene cytogenetic band: 15q23-q25 Ensembl cytogenetic band: 15q24.1 HGNC cytogenetic band: 15q24.1 CSK Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15P072861:
(about GC identifiers )
Start:
72,861,768 bp from pter
End:
72,882,558 bp from pter
Size:
20,791 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000015.8 NT_010194.16 Proteins for CSK
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CSK_HUMAN, P41240 (See
protein sequence )Recommended Name: Tyrosine-protein kinase CSK Size : 450 amino acids; 50704 Da
Subunit : Interacts with PTPN8 (By similarity). Interacts with phosphorylated SIT1, PAG1, LIME1 andTGFB1I1
Subcellular location : Cytoplasm (By similarity). Cell membrane (By similarity). Note=Mainlycytoplasmic, also present in lipid rafts (By similarity)
PDB structures from and Proteopedia : 1BYG (3D)
 1CSK (3D)
 3D7T (3D)
 3D7U (3D)
 
Secondary accessions : Q2M3N2 Q6FGZ6
Post-translational modifications:
Autophosphorylation of Tyr-304 occurs only at abnormally high CSK concentrations in vitro1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001120662.1 NP_004374.1 ENSEMBL proteins: ENSP00000220003 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: CSK 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CSK: Assays for CSK:
Protein
Domains/ Families for CSK(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P41240 ProtoNet protein and cluster: P41240
3 Blocks protein families : IPB000980 SH2 domain signature IPB001452 SH3 domain signature IPB008266 Tyrosine protein kinase UniProtKB/Swiss-Prot: CSK_HUMAN, P41240 Similarity : Belongs to the protein kinase superfamily. Tyr protein kinase family. CSK subfamilySimilarity : Contains 1 protein kinase domainSimilarity : Contains 1 SH2 domainSimilarity : Contains 1 SH3 domain
Gene Function for CSK
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (CSK ) Millipore RNAi Products for the Analysis of CSK Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (CSK )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001127190 Applied Biosystems Silencer ® siRNAs for CSK Sigma-Aldrich siRNA and siRNA Panels for CSK Sigma-Aldrich shRNA Panels and shRNA for CSK Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001127190                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001127190                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001127190  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004383 UniProtKB/Swiss-Prot: CSK_HUMAN, P41240 Function : Specifically phosphorylates 'Tyr-504' on LCK, which acts as a negative regulatory site.Can also act on the LYN and FYN kinases Catalytic activity : ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme Number (IUBMB): EC 2.7.10.2
Genatlas biochemistry entry for CSK :tyrosine kinase,SRC downregulating (putative antioncogene)
12 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Csk) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for CSK
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for CSK (Your Favorite Gene powered by Ingenuity) (see all 6
) Gene Network CentralTM Interacting Genes and Proteins Network for CSK 5/124 Interacting proteins for CSK (ENSP00000220003 3 P41240 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 124
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006468 protein amino acid phosphorylation
TAS 1945408 GO:0008285 negative regulation of cell proliferation
IEA --
About this table
Drugs & Compounds for CSK (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for CSK
Sigma-Aldrich Small Molecules for CSK:Inhibitor
Browse Tocris compounds for CSK 10/37 Novoseek chemical compound relationships for CSK gene (see all 37
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
87.99
432
8621646 (5), 17233630 (5), 9794236 (4), 10845713 (4) (see all 99 )
phosphotyrosine
68.93
16
7683128 (2), 7544435 (2), 7524477 (1), 9618476 (1) (see all 6 )
4-amino-5-(4-chlorophenyl)-7-(t-butyl)pyrazolo[3,4-d]pyrimidine
58.89
1
15451023 (1)
phosphatidylinositol
42.76
7
7524477 (1), 8626429 (1), 12837289 (1), 16530387 (1) (see all 7 )
threonine
40.57
2
1379736 (1), 8813150 (1)
pd 98,059
39.46
4
18971559 (1), 16172428 (1), 17283870 (1), 14704150 (1)
tcdd
33.43
15
9707505 (3), 17223712 (2), 15674848 (2), 15674841 (1) (see all 7 )
gdp(beta-s)
27.00
3
18971559 (1), 16172428 (1), 17283870 (1)
atp
26.61
12
7527038 (2), 9048573 (2), 8529658 (1), 9190882 (1) (see all 9 )
sp 600125
25.14
1
16213648 (1)
About this table
Transcripts for CSK(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (CSK ) Millipore RNAi Products for the Analysis of CSK Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (CSK )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001127190 Sigma-Aldrich siRNA and siRNA Panels for CSK Sigma-Aldrich shRNA Panels and shRNA for CSK Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001127190 NM_004383
REFSEQ mRNAs for CSK gene (2 alternative transcripts): NM_001127190.1 NM_004383.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001127190 NM_004383
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001127190                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001127190                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001127190  
Additional cDNA sequence: AB451288.1 AB451420.1 AK127672.1 AK223626.1 AK290531.1 AK297694.1 AK298245.1 AK309344.1 AK310136.1 AK312669.1 AY007162.1 BC104847.1 BC104875.1 BC106073.1 CR541960.1 CR620625.1 X59932.1 X60114.1
12 DOTS entries : DT.445561 DT.101983024 DT.100794281 DT.121045785 DT.121045769 DT.86998996 DT.100794276 DT.100794279 DT.95335504 DT.97795792 DT.99978627 DT.95335507
24/335 AceView cDNA sequences (see all 335
):BQ678773 BM559131 BU168116 BQ645407 BG684389 BQ053616 AL120509 BM700224 CD369793 BM709046 BU732506 AL048646 BM768847 CF264931 BU844454 CK430451 BU838081 BQ053738 AI675456 BM917940 BQ670890 AY007162 BG576865 CB109729
highest scoring ESTs for CSK :X59932 AA210823 AA278252 AA279470 AA594500 AA609402 AA613912 AA613919 AA714748 AA789308
Unigene Cluster for CSK: C-src tyrosine kinase Hs.77793 [show with all ESTs ] Unigene Representative Sequence: NM_004383 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for CSK (see all 10
) ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c ^ 15 ^ 16a · 16b · 16c · SP1 :               -         -         -         -               SP2 :       -   -   -     -         -         -         -               SP3 :   -     -   -   -     -         -         -         -               SP4 :                               -         -               SP5 :                                       -              
ExUns: 16d ^ 17a · 17b ^ 18a · 18b SP1 :           SP2 :           SP3 :           SP4 :           SP5 :          
About this scheme ECgene alternative splicing isoforms for CSK 1 Ensembl transcript including schematic representation : ENST00000220003
Expression for CSK
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CSK expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CSK 1 / 2 / 3
3 probe-sets matching CSK gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGGACACCGCSOURCE GeneReport for Unigene cluster: Hs.77793 Expression variation in blood from EXPOLDB for CSK
UniProtKB/Swiss-Prot: CSK_HUMAN, P41240 Tissue specificity : Expressed in lung and macrophages
Orthologs for CSK
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CSK gene from 5/13 species (see all 13
)
About this table Species with no ortholog for CSK ENSEMBL Gene Tree for CSK Paralogs for CSK (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CSK gene MATK 2 SRMS 2 PTK6 2
SNPs/Variants for CSK (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CSK (up to first 250kb)
Disorders & Mutations for CSK
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 124095 10/25 Novoseek disease relationships for CSK gene (see all 25
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
osteopetrosis
37.38
1
7688650 (1)
colon cancer
36.38
7
14712234 (2), 11054667 (2), 15961079 (1), 10958949 (1) (see all 5 )
breast cancer
34.78
19
11445575 (4), 11278729 (1), 12753909 (1), 12941830 (1) (see all 14 )
colon carcinoma
32.48
2
7681838 (1), 11443610 (1)
cancer
25.74
14
14712234 (3), 7533218 (2), 15194078 (1), 16243715 (1) (see all 9 )
colon adenocarcinoma
24.27
1
11054667 (1)
tumors
23.54
25
11084024 (4), 10974196 (2), 16716300 (2), 11445575 (2) (see all 16 )
colon tumor
20.53
1
10974196 (1)
pancreatic carcinoma
15.42
2
10845713 (1)
breast carcinoma
13.92
5
11278729 (3), 11445575 (1), 15020686 (1)
About this table Human Genome Epidemiology Navigator: CSK (7 documents) Tumor Gene Database : CSK
Medical News for CSK (Possibly Related Articles in
Doctor's Guide )
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Publications for CSK (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/447 PubMed articles for CSK gene (see all 447
): Identification of csk tyrosine phosphorylation sites and a tyrosine residue important for kinase domain structure. (PubMed id 9148770) 1, 3, 4 Joukov V....Bergman M. (1997) The c-src tyrosine kinase (CSK) gene, a potential antioncogene, localizes to human chromosome region 15q23----q25. (PubMed id 1377109) 1, 2, 3 Armstrong E....Alitalo K. (1992) Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry. (PubMed id 17192257) 3, 4 Wissing J.... Daub H. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) LIME: a new membrane raft-associated adaptor protein involved in CD4 and CD8 coreceptor signaling. (PubMed id 14610046) 3, 4 Brdickova N....Horejsi V. (2003) Structural and functional dissection of the cytoplasmic domain of the transmembrane adaptor protein SIT (SHP2-interacting transmembrane adaptor protein). (PubMed id 11433379) 3, 4 Pfrepper K.-I.... Schraven B. (2001) Phosphoprotein associated with glycosphingolipid-enriched microdomains (PAG), a novel ubiquitously expressed transmembrane adaptor protein, binds the protein tyrosine kinase csk and is involved in regulation of T cell activation. (PubMed id 10790433) 3, 4 Brdicka T.... Schraven B. (2000) The crystal structure of human CskSH3: structural diversity near the RT-Src and n-Src loop. (PubMed id 7511113) 3, 4 Borchert T.V....Wierenga R.K. (1994) Characterization of the human CSK locus. (PubMed id 7683131) 3, 4 Braeuninger A.... Ruebsamen-Waigmann H. (1993) Isolation and characterization of a human gene that encodes a new subclass of protein tyrosine kinases. (PubMed id 1371489) 3, 4 Brauninger A.... Rubsamen-Waigmann H. (1992)
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Genome Databases showing CSK
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CSK
(According to HUGE )
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--
Specialized Databases showing CSK (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CSK (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CSK:
Antibodies & Assays for CSK  
Recombinant Proteins (CSK ) Antibodies (CSK )
Search Tocris compounds for CSK
Antibodies for CSK
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009