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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CSF2RB Gene

protein-coding   GIFtS: 67
GCID: GC22P037309

Colony Stimulating Factor 2 Receptor, Beta, Low-Affinity...


(Previous symbol: IL3RB)
  15 related diseases
at
MalaCards
 

Aliases
for CSF2RB gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section
Aliases
Colony Stimulating Factor 2 Receptor, Beta, Low-Affinity
(Granulocyte-Macrophage)1 2
     SMDP52
IL3RB1 2 3     Colony-Stimulating Factor-2 Receptor, Beta, Low-Affinity2
CDw1312 3     Cytokine Receptor Common Subunit Beta2
IL5RB2 3     GM-CSF/IL-3/IL-5 Receptor Common Beta-Chain2
GM-CSF/IL-3/IL-5 Receptor Common Beta Subunit2 3     Interleukin 3 Receptor/Granulocyte-Macrophage Colony Stimulating Factor 3
Receptor, Beta (High Affinity)2
CD1312     CD131 Antigen3

External Ids:    HGNC: 24361   Entrez Gene: 14392   Ensembl: ENSG000001003687   OMIM: 1389815   UniProtKB: P329273   

Export aliases for CSF2RB gene to outside databases

Previous GC identifers: GC22P033932 GC22P035552 GC22P035561 GC22P035642 GC22P020271


Summaries
for CSF2RB gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for CSF2RB Gene:
The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3, IL-5 and CSF. Defects
in this gene have been reported to be associated with protein alveolar proteinosis (PAP). (provided by RefSeq, Jul
2008)

GeneCards Summary for CSF2RB Gene: 
CSF2RB (colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)) is a protein-coding gene. Diseases associated with CSF2RB include megakaryocytic leukemia, and pulmonary alveolar proteinosis, and among its related super-pathways are STAT3 Pathway and MAPK Family Pathway. GO annotations related to this gene include interleukin-5 receptor activity and receptor activity.

UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927
Function: High affinity receptor for interleukin-3, interleukin-5 and granulocyte-macrophage colony-stimulating factor




Genomic Views
for CSF2RB gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000022.10  NT_011520.12  NC_018933.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CSF2RB gene promoter:
         GR   AML1a   GR-beta   IRF-1   RORalpha1   POU2F1   POU2F1a   Chx10   ARP-1   GR-alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CSF2RB promoter sequence
   Search SABiosciences Chromatin IP Primers for CSF2RB

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CSF2RB


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.1   Ensembl cytogenetic band:  22q12.3   HGNC cytogenetic band: 22q12.2-q13.1

CSF2RB Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CSF2RB gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22P037309:  view genomic region     (about GC identifiers)

Start:
 37,309,670 bp from pter      End:
 37,336,491 bp from pter
Size:
 26,822 bases      Orientation:
 plus strand

Proteins
for CSF2RB gene

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section
UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927 (See protein sequence)
Recommended Name: Cytokine receptor common subunit beta precursor  
Size: 897 amino acids; 97336 Da
Subunit: Heterodimer of an alpha and a beta subunit. The beta subunit is common to the IL3, IL5 and GM-CSF receptors.
The signaling GM-CSF receptor complex is a dodecamer of two head-to-head hexamers of two alpha, two beta, and two
ligand subunits. Interacts with TMEM102; this interaction occurs preferentially in the absence of CSF2. Interacts with
LYN (By similarity)
Subcellular location: Membrane; Single-pass type I membrane protein
5 PDB 3D structures from and Proteopedia for CSF2RB:
1C8P (3D)        1EGJ (3D)        1GH7 (3D)        2GYS (3D)        3CXE (3D)    
Secondary accessions: Q5JZI1 Q6ICE0
Alternative splicing: 2 isoforms:  P32927-1   P32927-2   

Explore the universe of human proteins at neXtProt for CSF2RB: NX_P32927

Explore proteomics data for CSF2RB at MOPED 

Post-translational modifications:

  • UniProtKB: May be phosphorylated by LYN (By similarity)
  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_P32927

    • CSF2RB Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CSF2RB Protein Expression
    REFSEQ proteins: NP_000386.1  
    ENSEMBL proteins: 
     ENSP00000384053   ENSP00000385271   ENSP00000393585   ENSP00000262825   ENSP00000440003  
    Reactome Protein details: P32927
    Human Recombinant Protein Products for CSF2RB: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    R&D Systems Recombinant & Natural Proteins for CSF2RB (Common beta Chain)
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein for CSF2RB
    OriGene Protein Over-expression Lysate for CSF2RB
    OriGene MassSpec for CSF2RB 
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    GenScript Purified and Recombinant Proteins for CSF2RB
    Novus Biologicals CSF2RB Proteins
    Novus Biologicals CSF2RB Lysate
    Sino Biological Recombinant Protein for CSF2RB
    Sino Biological Cell Lysate for CSF2RB 
    Browse ProSpec Recombinant Proteins
    Browse Proteins at Cloud-Clone Corp. 

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0005887integral to plasma membrane NAS1702217
    GO:0016020membrane ----
    GO:0016021integral to membrane ----
    GO:0030526granulocyte macrophage colony-stimulating factor receptor complex TAS9410898

    CSF2RB for ontologies           About GeneDecksing



    CSF2RB Antibody Products: 
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    Novus Biologicals CSF2RB Antibodies
    Abcam antibodies for CSF2RB
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    LSBio Antibodies in human, mouse, rat for CSF2RB 

    Assay Products for CSF2RB: 
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    Protein Domains /
    Families
    for CSF2RB gene

    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    		 HGNC Gene Families: 
    FN3: Fibronectin type III domain containing
    CD: CD molecules

    IUPHAR Guide to PHARMACOLOGY protein family classification: Cytokine receptor common β subunit 
    IL-3 receptor family

    5 InterPro protein domains:
     IPR015321 IL6_recept-bd
     IPR003961 Fibronectin_type3
     IPR013783 Ig-like_fold
     IPR011365 IL3_rcpt_beta
     IPR003531 Hempt_rcpt_S_F1_CS

    Graphical View of Domain Structure for InterPro Entry P32927

    ProtoNet protein and cluster: P32927

    1 Blocks protein domain: IPB003531 Short hematopoietin receptor

    UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927
    Domain: The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular
    transport and cell-surface receptor binding
    Domain: The box 1 motif is required for JAK interaction and/or activation
    Similarity: Belongs to the type I cytokine receptor family. Type 4 subfamily
    Similarity: Contains 2 fibronectin type-III domains


    CSF2RB for domains           About GeneDecksing


    Function
    for CSF2RB gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section
    Molecular Function:

         UniProtKB/Swiss-Prot Summary: IL3RB_HUMAN, P32927
    Function: High affinity receptor for interleukin-3, interleukin-5 and granulocyte-macrophage colony-stimulating factor

         Genatlas biochemistry entry for CSF2RB:
    colony-stimulating factor 2 (granulocyte,macrophage), interleukin 3,interleukin 5 receptor common subunit beta (high
    affinity),critical for the activation of both the JAK/STAT (JAK2,STAT5) and MAP kinase pathways,involved in LYN
    binding

         Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872receptor activity TAS9410898
    GO:0004896cytokine receptor activity ----
    GO:0004912contributes to interleukin-3 receptor activity TAS9410898
    GO:0004914contributes to interleukin-5 receptor activity TAS9410898
    GO:0005515protein binding IPI1495999
         
    CSF2RB for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for CSF2RB:
     Increased 8N DNA content 

         5 MGI mutant phenotypes (inferred from 3 alleles) (MGI details for Csf2rb):
     cellular  hematopoietic system  homeostasis/metabolism  immune system  respiratory system 

    CSF2RB for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-outs for CSF2RB: Csf2rbtm1Clsc Csf2rbtm1Mur Csf2rbtm1Cgb
       inGenious Targeting Laboratory - Custom generated mouse model solutions for CSF2RB 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for CSF2RB

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CSF2RB
    7 QIAGEN miScript miRNA Assays for microRNAs that regulate CSF2RB:
    hsa-miR-365 hsa-miR-576-5p hsa-miR-19b hsa-miR-889 hsa-miR-155 hsa-miR-4282 hsa-miR-19a
    SwitchGear 3'UTR luciferase reporter plasmid: CSF2RB 3' UTR sequence
    Inhib. RNA
    Products:            		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for CSF2RB
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    Sirion Biotech Custom design and validation of potent shRNA sequences against CSF2RB

    Gene Editing
    Products:    		DNA2.0 Custom Protein Engineering Service for CSF2RB
    Sirion Biotech Customized adenovirus for overexpression of CSF2RB
                         Customized adenovirus for potent knockdown of CSF2RB

    Clone
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    OriGene clones in human, mouse for CSF2RB (see all 7)
    OriGene ORF clones in mouse, rat for CSF2RB
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    GenScript: all cDNA clones in your preferred vector: CSF2RB (NM_000395)
    Sino Biological Human cDNA Clone for CSF2RB
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CSF2RB
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CSF2RB

    Cell Line
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    Search LifeMap BioReagents cell lines for CSF2RB
    Sirion Biotech Customized stable knockdown cell line services for CSF2RB
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    In Situ Assay
    Products:       
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CSF2RB


    Pathways & Interactions
    for CSF2RB gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for CSF2RB About   (see all 18)                                                                                              See pathways by source

    SuperPathContained pathways About
    1PEDF Induced Signaling
    		PGC1Alpha Pathway0.51
    		Glucocorticoid Receptor Signaling0.43
    		STAT3 Pathway0.47
    		Cytokine-cytokine receptor interaction0.43
    2TGF-Beta Pathway
    		TGF-Beta Pathway0.60
    		JAK-STAT Pathway0.57
    		MAPK Family Pathway0.60
    		JNK Pathway0.51
    3Interleukin-3, 5 and GM-CSF signaling
    		Interleukin receptor SHC signaling0.67
    		Interleukin-3, 5 and GM-CSF signaling0.57
    		Interleukin-2 signaling0.67
    		Signaling by Interleukins0.45
    4Akt Signaling
    		Akt Signaling0.60
    		Tec Kinases Signaling0.55
    		p38 Signaling0.60
    5Interferon Signaling
    		Cytokine Signaling in Immune system0.61

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways

    1 EMD Millipore Pathway for CSF2RB
        Immune response IL-3 activation and signaling pathway

    5/15 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CSF2RB (see all 15)
        MSP-RON Signaling
    STAT3 Pathway
    Molecular Mechanisms of Cancer
    Antioxidant Action of Vitamin-C
    Glucocorticoid Receptor Signaling

    1 Cell Signaling Technology (CST) Pathway for CSF2RB
        Jak/Stat Pathway

    1 GeneGo (Thomson Reuters) Pathway for CSF2RB
        Immune response IL-3 activation and signaling pathway

    3 BioSystems Pathways for CSF2RB
        IL-5 Signaling Pathway
    Kit Receptor Signaling Pathway
    IL-3 Signaling Pathway


    5/6        Reactome Pathways for CSF2RB (see all 6)
        Interleukin receptor SHC signaling
    Interleukin-2 signaling
    Cytokine Signaling in Immune system
    Interleukin-3, 5 and GM-CSF signaling
    Signaling by Interleukins


    3         Kegg Pathways  (Kegg details for CSF2RB):
        Cytokine-cytokine receptor interaction
    Apoptosis
    Jak-STAT signaling pathway


    CSF2RB for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CSF2RB

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/67 Interacting proteins for CSF2RB (P329271, 2, 3 ENSP000003840534) via UniProtKB, MINT, STRING, and/or I2D (see all 67)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SHC1P293532, 3, ENSP000004013034MINT-8286845 MINT-8286769 MINT-8286829 MINT-8035467 I2D: score=6 STRING: ENSP00000401303
    PTPN11Q061242, 3, ENSP000003409444MINT-8035452 MINT-8035437 I2D: score=5 STRING: ENSP00000340944
    IL5P051131, 3, ENSP000002314544EBI-1809771,EBI-2435811 I2D: score=1 STRING: ENSP00000231454
    PIK3R1P279862, ENSP000002743354MINT-8286845 MINT-8286707 MINT-8286769 MINT-8286829 STRING: ENSP00000274335
    JAK2O606741, 2, 3, ENSP000003710674EBI-1809771,EBI-518647 MINT-8286707 I2D: score=5 STRING: ENSP00000371067
    About this table

    Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007165signal transduction NAS1702217
    GO:0007585respiratory gaseous exchange TAS9410898
    GO:0019221cytokine-mediated signaling pathway ----
    GO:0036016cellular response to interleukin-3 TAS9410898
    GO:0038043interleukin-5-mediated signaling pathway TAS9410898

    CSF2RB for ontologies           About GeneDecksing



    Drugs & Compounds
    for CSF2RB gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, IUPHAR, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CSF2RB (IL3RB)

    2 DrugBank Compounds for CSF2RB    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    SargramostimColony-stimulating factor (see all 5)83869-56-1targetagonist17139284 1424804 17016423
    Alpha-D-Mannose-- 3458-28-4target----

    Search CenterWatch for drugs/clinical trials and news about CSF2RB / IL3RB

    Transcripts
    for CSF2RB gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for CSF2RB gene: 
    NM_000395.2  

    Unigene Cluster for CSF2RB:

    Colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
    Hs.592192  [show with all ESTs]
    Unigene Representative Sequence: NM_000395
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000403662(uc003aqa.4) ENST00000406230 ENST00000421539 ENST00000262825(uc003aqc.4)
    ENST00000536485
    miRNA
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    hsa-miR-365 hsa-miR-576-5p hsa-miR-19b hsa-miR-889 hsa-miR-155 hsa-miR-4282 hsa-miR-19a
    SwitchGear 3'UTR luciferase reporter plasmid: CSF2RB 3' UTR sequence
    Inhib. RNA
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    Clone
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    Primer
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    Additional mRNA sequence: 

    AK302993.1 BC070085.1 CR456428.1 M59941.1 

    5 DOTS entries:

    DT.99935002  DT.100744002  DT.101956029  DT.100687954  DT.453853 

    24/112 AceView cDNA sequences (see all 112):

    BU617730 CR604461 BC070085 CA306570 CA448651 AA279147 CR456428 AU185738 
    AI718599 AI523112 BF002507 NM_000395 BX450991 M59941 AA847136 AA960845 
    H55302 AI379138 C01377 CA428322 AA768316 AA761543 BG571722 AV712344 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for CSF2RB    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14
    SP1:              -                                         -                                             
    SP2:              -                                                                                       
    SP3:                                                                                                      


    ECgene alternative splicing isoforms for CSF2RB

    Expression
    for CSF2RB gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CSF2RB expression in normal human tissues (normalized intensities)      CSF2RB embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TACCTGAAGT
    CSF2RB Expression
    About this image


    CSF2RB expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/2 selected tissues (see all 2) fully expand
     
     Ovary (Reproductive System)
             Cumulus Cells Antral Follicle
     
     Placenta (Extraembryonic Tissues)

    See CSF2RB Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CSF2RB

    SOURCE GeneReport for Unigene cluster: Hs.592192
        SABiosciences Expression via Pathway-Focused PCR Arrays including CSF2RB: 
              NFKB Signaling Targets in human mouse rat
              Interferons & Receptors in human mouse rat
              Inflammatory Response & Autoimmunity 384HT in human mouse rat

    Primer
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CSF2RB
    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CSF2RB

    Orthologs
    for CSF2RB gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of chordates.

    Orthologs for CSF2RB gene from 4/10 species (see all 10)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Csf2rb5
    Csf2rb21    		 colony stimulating factor 2 receptor, beta, low-affinity more5
    colony stimulating factor 2 receptor, beta 2, low-affinity more1    		 69.84(n)1
    57.57(a)1    		   15 (37.36 cM)5
    129841  NM_007781.21  NP_031807.11 
     783259905 
    chicken
    (Gallus gallus)    		 Aves CSF2RB1 colony stimulating factor 2 receptor, beta, low-affinity more 48.8(n)
    36.7(a)    		   771315  XM_001234608.2  XP_001234609.2 
    lizard
    (Anolis carolinensis)    		 Reptilia CSF2RB6
    		 colony stimulating factor 2 receptor, beta, low-af...
    		 25(a)
    		 1 ↔ 1
    		 5(22624398-22652867)
    zebrafish
    (Danio rerio)    		 Actinopterygii csf2rb6
    		 colony stimulating factor 2 receptor, beta, low-af...
    		 18(a)
    		 1 ↔ 1
    		 3(24609384-24623449)


    ENSEMBL Gene Tree for CSF2RB (if available)
    TreeFam Gene Tree for CSF2RB (if available)

    Paralogs
    for CSF2RB gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CSF2RB gene

    CSF2RB for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for CSF2RB
    PGOHUM00000259706


    Genomic Variants
    for CSF2RB gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/873 SNPs in CSF2RB are shown (see all 873)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 22 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs126284951,2
    		C,H--21224716(+) ATATAC/TGAGTT 1 -- us2k15Minor allele frequency- T:0.17NA CSA WA EA 362
    rs1434983721,2
    		--21224771(+) CATCTA/GTAAGG 1 -- us2k10--------
    rs1887161981,2
    		--21224834(+) CAGCCA/GAAGGT 1 -- us2k10--------
    rs738839731,2
    		C--21224845(+) CTGCTC/TACAGC 1 -- us2k13Minor allele frequency- T:0.06WA NA 240
    rs169974921,2
    		C,F--21224870(+) CCTGGT/CCATTA 1 -- us2k16Minor allele frequency- C:0.05NA WA 380
    rs1915398111,2
    		--21224930(+) AGATCA/GTCAAT 1 -- us2k10--------
    rs1821655581,2
    		--21224959(+) ACATAA/CCACTG 1 -- us2k10--------
    rs1872042801,2
    		--21224966(+) ACTGAA/CGGAAA 1 -- us2k10--------
    rs1145367761,2
    		C,F--21225104(+) CTCTAT/CGATGA 1 -- us2k11Minor allele frequency- C:0.02WA 118
    rs1151537941,2
    		C,F--21225212(+) GTCTCG/TGGTTC 1 -- us2k11Minor allele frequency- T:0.03WA 118

    HapMap Linkage Disequilibrium report for CSF2RB (37309670 - 37336491 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for CSF2RB:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv915010CNV Loss21882294
    dgv1405e1CNV Complex17122850


    Human Gene Mutation Database (HGMD): CSF2RB
    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CSF2RB
    DNA2.0 Custom Variant and Variant Library Synthesis for CSF2RB

    Disorders / Diseases
    for CSF2RB gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    CSF2RB for disorders           About GeneDecksing

    OMIM gene information: 138981    OMIM disorders: --

    UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927
  • Pulmonary surfactant metabolism dysfunction 5 (SMDP5) [MIM:614370]: A rare lung disorder due to impaired
    • surfactant homeostasis. It is characterized by alveolar filling with floccular material that stains positive using the
    periodic acid-Schiff method and is derived from surfactant phospholipids and protein components. Excessive
    lipoproteins accumulation in the alveoli results in severe respiratory distress. Note=The disease is caused by
    mutations affecting the gene represented in this entry

    15 diseases for CSF2RB:    About MalaCards
    megakaryocytic leukemia    pulmonary alveolar proteinosis    rubella    cblc
    atopy    ankylosing spondylitis    spondylitis    herpes simplex
    influenza    schizophrenia    cervical cancer    bipolar disorder
    asthma    cervicitis    leukemia

    1 disease from the University of Copenhagen DISEASES database for CSF2RB:
    Pulmonary alveolar proteinosis
    Genetic Association Database (GAD): CSF2RB
    Human Genome Epidemiology (HuGE) Navigator: CSF2RB (14 documents)

    Export disorders for CSF2RB gene to outside databases

    Publications
    for CSF2RB gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CSF2RB gene, integrated from 9 sources (see all 101):
    (articles sorted by number of sources associating them with CSF2RB)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Association between interleukin-3 receptor alpha polymorphism and schizophrenia in the Chinese population. (PubMed id 18547720)1, 4, 9 Sun S....Zhang X.Y. (2008)
    2. An improved resolution structure of the human beta common receptor involved in IL-3, IL-5 and GM-CSF signalling which gives better definition of the high-affinity binding epitope. (PubMed id 16754968)1, 2, 9 Carr P.D.... Young I.G. (2006)
    3. A genome-wide association study in Han Chinese identif ies new susceptibility loci for ankylosing spondylitis. (PubMed id 22138694)1, 4 Lin Z....Gu J. (2012)
    4. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (2010)
    5. Gene-wide analyses of genome-wide association data sets: evidence for multiple common risk alleles for schizophrenia and bipolar disorder and for overlap in genetic risk. (PubMed id 19065143)1, 4 Moskvina V....O'Donovan M.C. (2009)
    6. High-density association study of 383 candidate genes for volumetric BMD at the femoral neck and lumbar spine among older men. (PubMed id 19453261)1, 4 Yerges L.M....Zmuda J.M. (2009)
    7. Interaction between interleukin 3 and dystrobrevin-binding protein 1 in schizophrenia. (PubMed id 18804346)1, 4 Edwards T.L....Chen X. (2008)
    8. CBAP interacts with the un-liganded common beta-subunit of the GM-CSF/IL-3/IL-5 receptor and induces apoptosis via mitochondrial dysfunction. (PubMed id 17828305)1, 2 Kao C.J....Yen J.J. (2008)
    9. The structure of the GM-CSF receptor complex reveals a distinct mode of cytokine receptor activation. (PubMed id 18692472)1, 2 Hansen G....Parker M.W. (2008)
    10. Polymorphisms in eosinophil pathway genes, asthma and atopy. (PubMed id 17362254)1, 4 Kabesch M....Nickel R. (2007)

    External Searches for CSF2RB gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
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      Query String
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    Genome Databases showing CSF2RB gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 1439 HGNC: 2436 AceView: CSF2RB Ensembl:ENSG00000100368 euGenes: HUgn1439
    ECgene: CSF2RB Kegg: 1439 H-InvDB: CSF2RB

    Other Databases showing CSF2RB gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing CSF2RB gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CSF2RB Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for CSF2RB Genetics and Cytogenetics in Oncology and Haematology

    Intellectual Property
    for CSF2RB gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for CSF2RB gene:
    Search GeneIP for patents involving CSF2RB

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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