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CSF2RB Gene

protein-coding   GIFtS: 66

GC22P035642
colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: IL3RB)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
CD131 1, 2
CDw131 2, 3
IL3RB 2, 3
IL5RB 1, 2, 3
Descriptions
CD131 antigen 3
GM-CSF/IL-3/IL-5 receptor common beta-chain 2, 3
colony stimulating factor 2 receptor, beta 2
colony stimulating factor 2 receptor, beta, low-affinity
(granulocyte-macrophage) 2
colony-stimulating factor-2 receptor, beta, low-affinity 2
cytokine receptor common subunit beta 2
interleukin 3 receptor/granulocyte-macrophage colony
stimulating factor 3 receptor, beta (high affinity) 2
External Ids
HGNC: 24361
Entrez Gene: 14392
UniProtKB: P329273
Ensembl: ENSG000001003687
Search outside databases for aliases for CSF2RB gene

Previous GC identifers: GC22P033932 GC22P035552 GC22P035561

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for CSF2RB:
The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3,
IL-5 and CSF. Defects in this gene have been reported to be associated with protein alveolar
proteinosis (PAP). [provided by RefSeq]

UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927
Function: High affinity receptor for interleukin-3, interleukin-5 and granulocyte-macrophage
colony-stimulating factor

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the CSF2RB gene  

Entrez Gene cytogenetic band: 22q13.1   Ensembl cytogenetic band:  22q12.3   HGNC cytogenetic band: 22q12.2-q13.1

CSF2RB Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22P035642:     (about GC identifiers)

Start:
35,639,616 bp from pter
End:
35,666,437 bp from pter
Size:
26,822 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000022.9  NT_011520.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927 (See protein sequence)
Recommended Name: Cytokine receptor common subunit beta precursor  
Size: 897 amino acids; 97336 Da
Subunit: Heterodimer of an alpha and a beta subunit. The beta subunit is common to the IL3, IL5 and
GM-CSF receptors
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :
1C8P (3D)    1EGJ (3D)    1GH7 (3D)    2GYS (3D)    3CXE (3D)    
Secondary accessions: Q5JZI1 Q6ICE0
Alternative splicing: 2 isoforms:  P32927-1   P32927-2   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_000386.1  

    ENSEMBL proteins: 
    ENSP00000262825 ENSP00000385271 ENSP00000384053 


    Human Recombinant Proteins 
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    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (IL3RB)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016020 membrane IEA--
    GO:0030526 granulocyte macrophage colony-stimulating factor receptor complex TAS9410898
    About this table

    Antibodies for CSF2RB: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse Antibodies at Sigma-Aldrich
    R&D Systems Antibodies for CSF2RB (Common beta Chain)
    Antibodies from Abcam (IL3RB), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (CSF2RB)
    Novus Biologicals Antibodies for CSF2RB

    Assays for CSF2RB: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    4 InterPro domains/families:
     IPR008957 Fibronectin_typ-III-like_fold
     IPR003961 FN_III
     IPR011365 IL3_rcpt_beta
     IPR003531 Hempt_rcpt_S_F1_CS


       GeneDecks  CSF2RB for the domains selected above  
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    Graphical View of Domain Structure for InterPro Entry P32927

    ProtoNet protein and cluster: P32927

    1 Blocks protein family: IPB003531 Short hematopoietin receptor

    UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927
    Domain: The WSXWS motif appears to be necessary for proper protein folding and thereby efficient
    intracellular transport and cell-surface receptor binding
    Domain: The box 1 motif is required for JAK interaction and/or activation
    Similarity: Belongs to the type I cytokine receptor family. Type 4 subfamily
    Similarity: Contains 2 fibronectin type-III domains

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CSF2RB)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (CSF2RB)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000395

                  Applied Biosystems Silencer® siRNAs for CSF2RB

                  Sigma-Aldrich siRNA and siRNA Panels for CSF2RB  
                         Sigma-Aldrich shRNA Panels and shRNA for CSF2RB  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for CSF2RB
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_000395
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_000395
                                     untagged cDNA clone in CMV expression vector: NM_000395 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_000395

    UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927
    Function: High affinity receptor for interleukin-3, interleukin-5 and granulocyte-macrophage
    colony-stimulating factor

    Genatlas biochemistry entry for CSF2RB:
    colony-stimulating factor 2 (granulocyte,macrophage), interleukin 3,interleukin 5 receptor common
    subunit beta (high affinity),critical for the activation of both the JAK/STAT (JAK2,STAT5) and MAP
    kinase pathways,involved in LYN binding

    3 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Csf2rb):

    hematopoietic systemimmune systemrespiratory system

    4 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872 receptor activity TAS9410898
    GO:0004912contributes to interleukin-3 receptor activity TAS9410898
    GO:0004914contributes to interleukin-5 receptor activity TAS9410898
    GO:0005515 protein binding IPI17828305
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    2 Invitrogen iPath™ Online BioAtlas - Pathways for CSF2RB (Maps provided by GeneGo):
     IL3 activation and signaling pathway
     Erk Interactions: Inhibition of Erk

       GeneDecks  CSF2RB for the pathways selected above  
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    1 Millipore Pathway for CSF2RB
     Immune response IL-3 activation and signaling pathway

       GeneDecks  CSF2RB for the pathways selected above  
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    4 Sigma-Aldrich "Your Favorite Gene" Pathways for  CSF2RB  (Your Favorite Gene powered by Ingenuity) 
     GM-CSF Signaling
     Acute Myeloid Leukemia Signaling
     IL-3 Signaling
     RAR Activation

       GeneDecks  CSF2RB for the pathways selected above  
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    3 Kegg Pathways  (Kegg details for CSF2RB):
     hsa04060 Cytokine-cytokine receptor interaction
     hsa04210 Apoptosis
     hsa04630 Jak-STAT signaling pathway

       GeneDecks  CSF2RB for the pathways selected above  
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    5/64 Interacting proteins for CSF2RB (ENSP000002628253 P329271) via UniProtKB, MINT, and/or STRING (see all 64 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CSF2P041411STRING (score=.999) EBI-1809771, EBI-1809826
    JAK2O606741STRING (score=.999) EBI-1809771, EBI-518647
    IL3P087001EBI-1809771, EBI-1811718
    CSF2RAENSP000003709203STRING (score=.999)
    SHC1ENSP000003574323STRING (score=.998)
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007165 signal transduction NAS1702217
    GO:0007585 respiratory gaseous exchange TAS9410898
    GO:0019221 cytokine-mediated signaling pathway IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for CSF2RB

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CSF2RB)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (CSF2RB)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000395

                  Sigma-Aldrich siRNA and siRNA Panels for CSF2RB  
                         Sigma-Aldrich shRNA Panels and shRNA for CSF2RB  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_000395  

    REFSEQ mRNAs for CSF2RB gene: 

    NM_000395.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_000395  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_000395
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_000395
                                     untagged cDNA clone in CMV expression vector: NM_000395 

    Additional cDNA sequence: 

    AK302993.1 BC070085.1 CR456428.1 CR604461.1 M59941.1 

    5 DOTS entries:

    DT.99935002  DT.100744002  DT.101956029  DT.100687954  DT.453853 

    24/112 AceView cDNA sequences (see all 112 ):

    CR456428 C01377 AA847136 CR604461 AI379138 M59941 BF002507 AA960845 
    BC070085 H55302 CA448651 CA306570 AU185738 BX450991 BU617730 AA768316 
    CA428322 AA761543 AI523112 AA279147 AI718599 NM_000395 CD608389 BG002017 

    highest scoring ESTs for CSF2RB:

    M59941 AA001063 BI059234 BQ342799 CA406713 CR456428 D58877 H55302 AL540399 AV756141 

    Unigene Cluster for CSF2RB:

    Colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
    Hs.592192  [show with all ESTs]
    Unigene Representative Sequence: NM_000395


    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for CSF2RB

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14
    SP1:              -                                         -                                             
    SP2:              -                                                                                       
    SP3:                                                                                                      

    About this scheme

    ECgene alternative splicing isoforms for CSF2RB

    3 Ensembl transcripts including schematic representations:
    ENST00000262825  ENST00000406230  ENST00000403662  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    CSF2RB expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for CSF2RB

    1 / 2 / 3

    5 probe-sets matching CSF2RB gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    37494_at2, 3 U95-A 1 1.00 1.00 0.67 0.73 M59941 1.00 1.00 1.00 1
    37493_at2, 3 U95-A 1 1.00 1.00 0.97 1.29 H04668 0.60 1.00 0.82 1

    1086_at2, 3 U95-A 1 1.00 1.00 0.01 0.38 M59941 1.00 1.00 1.00 1

    205159_at2, 3 U133-A 1 1.00 1.00 -- -- AV756141 0.60 1.00 0.82 1

    205159_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  CSF2RB for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TACCTGAAGT

    SOURCE GeneReport for Unigene cluster: Hs.592192

    Expression variation in blood from EXPOLDB for CSF2RB

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for CSF2RB gene from 5/6 species (see all 6 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    CSF2RB1   -- colony stimulating factor 2 receptor, beta, low-affinity more 77.27(n)
    65.8(a)
    481276  XM_538397.2  XP_538397.2 
    chimpanzee
    (Pan troglodytes)
    CSF2RB1   -- colony stimulating factor 2 receptor, beta, low-affinity more 98.33(n)
    97.73(a)
    458802  XM_001145357.1  XP_001145357.1 
    cow
    (Bos taurus)
    CSF2RB1   -- colony stimulating factor 2 receptor, beta, low-affinity more 77.1(n)
    66.78(a)
    528530  XM_606956.3  XP_606956.3 
    rat
    (Rattus norvegicus)
    Csf2rb1   -- colony stimulating factor 2 receptor, beta, low-affinity more 70.22(n)
    56.45(a)
    171081  NM_133555.1  NP_598239.1 
    mouse
    (Mus musculus)
    Csf2rb5
    Csf2rb21
    15 (43.30 cM)5
    colony stimulating factor 2 receptor, beta, low-affinity more5
    colony stimulating factor 2 receptor, beta 2, low-affinity more1
    69.88(n)1
    57.57(a)1
    129841  NM_007781.21  NP_031807.11 
     AF4834965  AF4834975  (see all 38)
    About this table        Species with no ortholog for CSF2RB

    ENSEMBL Gene Tree for CSF2RB
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/134 NCBI SNPs in CSF2RB are shown (see all 134 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 96)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 22 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs1318421,2
    A,C,F,H,O35665719(-) CCATCC/TGTGAA 1 -- ut3113Minor allele frequency- N:0.00EU EA WA NA 1164
    rs48215681,2
    A,C,F,H35646422(+) gattaT/Caggga 1 -- ng51 tfbs34Minor allele frequency- C:0.40EU EA WA 418
    --
    rs60004951,2
    A,C,F,H35664899(+) GATGCG/AGCTGG 1 -- ut318Minor allele frequency- A:0.07EU EA WA 840
    rs57564081,2
    A,C,F,H35647794(+) GCCCCT/CGTCTC 1 -- ng513Minor allele frequency- C:0.37EA WA 282
    rs60004961,2
    A,C,F,H35665261(+) GTGGTG/CGGCAG 1 -- ut314Minor allele frequency- C:0.05EU EA WA 418
    rs48215671,2
    A,C,F,H35646334(+) cctaaT/Gcccca 1 -- ng514Minor allele frequency- G:0.40EU EA WA 418
    rs57564071,2
    A,C,F,H35646205(+) GAGTAT/CTGTTT 1 -- ng5111Minor allele frequency- C:0.40EU EA WA NA 974
    rs102222381,2
    C,F,H35647960(+) AACACG/TGGCGG 1 -- ng514Minor allele frequency- T:0.41EU EA WA 372
    rs48202611,2
    C,F,H35646895(+) tCATCG/ACTTCA 1 -- ng51 tfbs312Minor allele frequency- A:0.45EU EA WA NS NA 668
    rs168451,2
    C,F,H35656389(+) ACCTGG/CAGTGC 1 Q/E mis110Minor allele frequency- C:0.10MN EU EA WA 904
    About this table

    HapMap Linkage Disequilibrium images for CSF2RB (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 138981

    UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927
  • Defects in CSF2RB are a cause of congenital pulmonary alveolar proteinosis (PAP)
    [MIM:265120]. PAP is an autosomal recessive fatal respiratory disease
  • 1 PharmGKB disease relationship for CSF2RB gene

    Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
    Leukemia, Lymphocytic, Acute, L1FA  GN  12086872
    About this table

    Human Gene Mutation Database: CSF2RB
    Human Genome Epidemiology Navigator: CSF2RB (5 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/77 PubMed articles for CSF2RB gene (see all 77 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 1439 HGNC: 2436 AceView: CSF2RB Ensembl:ENSG00000100368 euGenes: HUgn1439
    ECgene: CSF2RB H-InvDB: CSF2RB
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for CSF2RB Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for CSF2RB:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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