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Aliases & Descriptions for CSF2RB
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CD131 1, 2 | | CDw131 2, 3 | | IL3RB 2, 3 | | IL5RB 1, 2, 3 |
| | | Descriptions |
|---|
| CD131 antigen 3 | | GM-CSF/IL-3/IL-5 receptor common beta-chain 2, 3 | | colony stimulating factor 2 receptor, beta 2 | colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) 2 | | colony-stimulating factor-2 receptor, beta, low-affinity 2 | | cytokine receptor common subunit beta 2 | interleukin 3 receptor/granulocyte-macrophage colony stimulating factor 3 receptor, beta (high affinity) 2 |
|
| | Search outside databases for aliases for CSF2RB genePrevious GC identifers: GC22P033932 GC22P035552 GC22P035561 |
Summaries for CSF2RB(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CSF2RB: The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3, IL-5 and CSF. Defects in this gene have been reported to be associated with protein alveolar proteinosis (PAP). [provided by RefSeq] UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927Function: High affinity receptor for interleukin-3, interleukin-5 and granulocyte-macrophage colony-stimulating factor |
Genomic Location for CSF2RB
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CSF2RB gene 
Entrez Gene cytogenetic band: 22q13.1 Ensembl cytogenetic band: 22q12.3 HGNC cytogenetic band: 22q12.2-q13.1CSF2RB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure GeneLoc location for GC22P035642:
(about GC identifiers)
Start:
|
35,639,616 bp from pter |
End:
|
35,666,437 bp from pter |
Size:
|
26,822 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000022.9 NT_011520.11
| Proteins for CSF2RB
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927 (See
protein sequence)Recommended Name: Cytokine receptor common subunit beta precursor Size: 897 amino acids; 97336 Da
Subunit: Heterodimer of an alpha and a beta subunit. The beta subunit is common to the IL3, IL5 and GM-CSF receptors
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :1C8P (3D)
 1EGJ (3D)
 1GH7 (3D)
 2GYS (3D)
 3CXE (3D)
 
Secondary accessions: Q5JZI1 Q6ICE0Alternative splicing: 2 isoforms: P32927-1 P32927-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000386.1
ENSEMBL proteins: ENSP00000262825 ENSP00000385271 ENSP00000384053
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016020 | membrane |
IEA | -- | | GO:0030526 | granulocyte macrophage colony-stimulating factor receptor complex |
TAS | 9410898 | About this table
Antibodies for CSF2RB: Assays for CSF2RB: | Protein
Domains/ Families for CSF2RB(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P32927
ProtoNet protein and cluster: P32927 1 Blocks protein family: IPB003531 Short hematopoietin receptor
UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927Domain: The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell-surface receptor bindingDomain: The box 1 motif is required for JAK interaction and/or activationSimilarity: Belongs to the type I cytokine receptor family. Type 4 subfamilySimilarity: Contains 2 fibronectin type-III domains | Gene Function for CSF2RB
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000395
Applied Biosystems Silencer® siRNAs for CSF2RB
Sigma-Aldrich siRNA and siRNA Panels for CSF2RB  Sigma-Aldrich shRNA Panels and shRNA for CSF2RB  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000395                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000395                                  untagged cDNA clone in CMV expression vector: NM_000395 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000395
UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927Function: High affinity receptor for interleukin-3, interleukin-5 and granulocyte-macrophage colony-stimulating factorGenatlas biochemistry entry for CSF2RB:colony-stimulating factor 2 (granulocyte,macrophage), interleukin 3,interleukin 5 receptor common subunit beta (high affinity),critical for the activation of both the JAK/STAT (JAK2,STAT5) and MAP kinase pathways,involved in LYN binding3 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Csf2rb):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for CSF2RB
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
4 Sigma-Aldrich "Your Favorite Gene" Pathways for CSF2RB (Your Favorite Gene powered by Ingenuity) 
5/64 Interacting proteins for CSF2RB (ENSP000002628253 P329271) via UniProtKB, MINT, and/or STRING (see all 64
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for CSF2RB(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CSF2RB
|
Transcripts for CSF2RB(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000395
Sigma-Aldrich siRNA and siRNA Panels for CSF2RB  Sigma-Aldrich shRNA Panels and shRNA for CSF2RB  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000395 REFSEQ mRNAs for CSF2RB gene: NM_000395.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000395               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000395                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000395                                  untagged cDNA clone in CMV expression vector: NM_000395  Additional cDNA sequence: AK302993.1 BC070085.1 CR456428.1 CR604461.1 M59941.1 5 DOTS entries: DT.99935002 DT.100744002 DT.101956029 DT.100687954 DT.453853 24/112 AceView cDNA sequences (see all 112
):CR456428 C01377 AA847136 CR604461 AI379138 M59941 BF002507 AA960845 BC070085 H55302 CA448651 CA306570 AU185738 BX450991 BU617730 AA768316 CA428322 AA761543 AI523112 AA279147 AI718599 NM_000395 CD608389 BG002017
highest scoring ESTs for CSF2RB:M59941 AA001063 BI059234 BQ342799 CA406713 CR456428 D58877 H55302 AL540399 AV756141 Unigene Cluster for CSF2RB: Colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) Hs.592192 [show with all ESTs]Unigene Representative Sequence: NM_000395
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for CSF2RB
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8a | · | 8b | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | |
| SP1: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CSF2RB
3 Ensembl transcripts including schematic representations: ENST00000262825
ENST00000406230
ENST00000403662
|
Expression for CSF2RB
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CSF2RB expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CSF2RB
1 / 2 / 3 5 probe-sets matching CSF2RB gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TACCTGAAGT
SOURCE GeneReport for Unigene cluster: Hs.592192
Expression variation in blood from EXPOLDB for CSF2RB |
Orthologs for CSF2RB
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CSF2RB gene from 5/6 species (see all 6
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
CSF2RB1 |
-- |
colony stimulating factor 2 receptor, beta, low-affinity more |
77.27(n) 65.8(a) |
481276 XM_538397.2 XP_538397.2 |
chimpanzee (Pan troglodytes) |
CSF2RB1 |
-- |
colony stimulating factor 2 receptor, beta, low-affinity more |
98.33(n) 97.73(a) |
458802 XM_001145357.1 XP_001145357.1 |
cow (Bos taurus) |
CSF2RB1 |
-- |
colony stimulating factor 2 receptor, beta, low-affinity more |
77.1(n) 66.78(a) |
528530 XM_606956.3 XP_606956.3 |
rat (Rattus norvegicus) |
Csf2rb1 |
-- |
colony stimulating factor 2 receptor, beta, low-affinity more |
70.22(n) 56.45(a) |
171081 NM_133555.1 NP_598239.1 |
mouse (Mus musculus) |
Csf2rb5 Csf2rb21 |
15 (43.30 cM)5
|
colony stimulating factor 2 receptor, beta, low-affinity more5 colony stimulating factor 2 receptor, beta 2, low-affinity more1 |
69.88(n)1 57.57(a)1 |
129841 NM_007781.21 NP_031807.11 AF4834965 AF4834975 (see all 38) |
About this table Species with no ortholog for CSF2RB
ENSEMBL Gene Tree for CSF2RB | Paralogs for CSF2RB(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for CSF2RB(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CSF2RB (up to first 250kb)
|
Disorders & Mutations for CSF2RB
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 138981
UniProtKB/Swiss-Prot: IL3RB_HUMAN, P32927
Defects in CSF2RB are a cause of congenital pulmonary alveolar proteinosis (PAP) [MIM:265120]. PAP is an autosomal recessive fatal respiratory disease1 PharmGKB disease relationship for CSF2RB geneAbout this table
Human Gene Mutation Database: CSF2RB Human Genome Epidemiology Navigator: CSF2RB (5 documents)
|
Medical News for CSF2RB(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CSF2RB (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/77 PubMed articles for CSF2RB gene (see all 77
):- An improved resolution structure of the human beta common receptor involved in IL-3, IL-5 and GM-CSF signalling which gives better definition of the high-affinity binding epitope. (PubMed id 16754968)1, 3, 4 Carr P.D.... Young I.G. (2006)
- A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802)3, 4 Collins J.E.... Dunham I. (2004)
- Structure of the complete extracellular domain of the common beta subunit of the human GM-CSF, IL-3, and IL-5 receptors reveals a novel dimer configuration. (PubMed id 11207369)3, 4 Carr P.D.... Young I.G. (2001)
- Structure of the activation domain of the GM-CSF/IL-3/IL-5 receptor common beta-chain bound to an antagonist. (PubMed id 10753826)3, 4 Rossjohn J.... Bagley C.J. (2000)
- The solution structure of the cytokine-binding domain of the common beta-chain of the receptors for granulocyte-macrophage colony- stimulating factor, interleukin-3 and interleukin-5. (PubMed id 10736232)3, 4 Mulhern T.D.... Bagley C.J. (2000)
- Human pulmonary alveolar proteinosis associated with a defect in GM- CSF/IL-3/IL-5 receptor common beta chain expression. (PubMed id 9410898)3, 4 Dirksen U.... Burdach S. (1997)
- Gene for the alpha-subunit of the human interleukin-3 receptor (IL3RA) localized to the X-Y pseudoautosomal region. (PubMed id 8213838)2, 3 Milatovich A....Francke U. (1993)
- Expression cloning of the human IL-3 receptor cDNA reveals a shared beta subunit for the human IL-3 and GM-CSF receptors. (PubMed id 1833064)2, 3 Kitamura T.... Miyajima A. (1991)
- Molecular cloning of a second subunit of the receptor for human granulocyte-macrophage colony-stimulating factor (GM-CSF): reconstitution of a high-affinity GM-CSF receptor. (PubMed id 1702217)3, 4 Hayashida K....Miyajima A. (1990)
- Association study of CSF2RB with schizophrenia in Irish family and case - control samples. (PubMed id 17667962)1, 3 Chen Q....Chen X. (2007)
|
Search for CSF2RB
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CSF2RB
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CSF2RB
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CSF2RB(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CSF2RB(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CSF2RB:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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