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Aliases & Descriptions for CSF1R
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| C-FMS 1, 2 | | CD115 1, 2 | | CSF-1-R 3 | | CSFR 1, 2 | | EC 2.7.10.1 3 | | FIM2 2 | | FMS 2, 3, 5 | | c-fms 3 |
| | | Descriptions |
|---|
| CD115 antigen 2, 3 | | Fms proto-oncogene 2, 3 | | McDonough feline sarcoma viral (v-fms) oncogene homolog 1, 2 | | colony stimulating factor 1 receptor 2 | | macrophage colony stimulating factor I receptor 2 | | soluble CSF1R variant 1 2 |
|
| | Search outside databases for aliases for CSF1R genePrevious GC identifers: GC05M149503 GC05M150020 GC05M149416 GC05M149461 |
Summaries for CSF1R(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CSF1R: The protein encoded by this gene is the receptor for colony stimulating factor 1, a cytokine which controls the production, differentiation, and function of macrophages. This receptor mediates most if not all of the biological effects of this cytokine. Ligand binding activates the receptor kinase through a process of oligomerization and transphosphorylation. The encoded protein is a tyrosine kinase transmembrane receptor and member of the CSF1/PDGF receptor family of tyrosine-protein kinases. Mutations in this gene have been associated with a predisposition to myeloid malignancy. The first intron of this gene contains a transcriptionally inactive ribosomal protein L7 processed pseudogene oriented in the opposite direction. [provided by RefSeq] UniProtKB/Swiss-Prot: CSF1R_HUMAN, P07333Function: Protein tyrosine-kinase transmembrane receptor for CSF1 and IL34Gene Wiki entry for CSF1R (Colony_stimulating_factor_1_receptor) |
Genomic Location for CSF1R
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CSF1R gene 
Entrez Gene cytogenetic band: 5q33-q35 Ensembl cytogenetic band: 5q33.1 HGNC cytogenetic band: 5q32CSF1R Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05M149413:
(about GC identifiers)
Start:
|
149,413,051 bp from pter |
End:
|
149,473,128 bp from pter |
Size:
|
60,078 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000005.8 NT_029289.10
| Proteins for CSF1R
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CSF1R_HUMAN, P07333 (See
protein sequence)Recommended Name: Macrophage colony-stimulating factor 1 receptor precursor Size: 972 amino acids; 107984 Da
Subunit: Interacts with INPPL1/SHIP2 and THOC5 (By similarity)
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :2I0V (3D)
 2I0Y (3D)
 2I1M (3D)
 2OGV (3D)
 3BEA (3D)
 3DPK (3D)
 
Secondary accessions: Q6LDW5 Q6LDY4Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005202.2
ENSEMBL proteins: ENSP00000286301 ENSP00000377844
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CSF1R:  | Invitrogen Antibodies for CSF1R |  | Millipore Mono- and Polyclonal Antibodies for the study of CSF1R |  | Sigma-Aldrich Antibodies for CSF1R |  | R&D Systems Antibodies for CSF1R (M-CSF R) |  | Cell Signaling Technology (CST) Antibodies for CSF1R  |  | Antibodies from Abcam (MCSF Receptor), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (CSF1R) |  | Novus Biologicals Antibodies for CSF1R |
Assays for CSF1R: | Protein
Domains/ Families for CSF1R(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P07333
ProtoNet protein and cluster: P07333 4 Blocks protein families: IPB001824 Receptor tyrosine kinase IPB003598 Immunoglobulin C-2 type IPB008266 Tyrosine protein kinase IPB013106 Immunoglobulin V-set
UniProtKB/Swiss-Prot: CSF1R_HUMAN, P07333Similarity: Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamilySimilarity: Contains 5 Ig-like C2-type (immunoglobulin-like) domainsSimilarity: Contains 1 protein kinase domain | Gene Function for CSF1R
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005211
Applied Biosystems Silencer® siRNAs for CSF1R
Sigma-Aldrich siRNA and siRNA Panels for CSF1R  Sigma-Aldrich shRNA Panels and shRNA for CSF1R  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005211                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005211                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005211 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005211
UniProtKB/Swiss-Prot: CSF1R_HUMAN, P07333Function: Protein tyrosine-kinase transmembrane receptor for CSF1 and IL34Catalytic activity: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme Number (IUBMB): EC 2.7.10.1 Genatlas biochemistry entry for CSF1R:colony-stimulating factor 1 (macrophage),receptor13 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Csf1r):
5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): About this table | Pathways & Interactions for CSF1R
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for CSF1R (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for CSF1R 
5/54 Interacting proteins for CSF1R (ENSP000002863013) via UniProtKB, MINT, and/or STRING (see all 54
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for CSF1R(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CSF1R 10/24 Novoseek chemical compound relationships for CSF1R gene (see all 24
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tyrosine |
71.89 |
166 |
14969583 (4), 8981370 (4), 1833648 (3), 16648572 (3) (see all 89) |
| nitroblue tetrazolium |
54.98 |
6 |
8913320 (1), 11911463 (1), 2144331 (1), 8462021 (1) (see all 5) |
| 12-o-tetradecanoylphorbol 13-acetate |
40.55 |
29 |
2144778 (6), 8359233 (6), 9301678 (2), 2140592 (2) (see all 7) |
| phosphatidylinositol |
39.14 |
21 |
2164469 (4), 1372092 (2), 1708091 (2), 1833648 (1) (see all 10) |
| bryostatin 1 |
37.79 |
3 |
9279365 (2), 11777344 (1) |
| phorbol |
37.52 |
3 |
15286807 (1), 2144778 (1), 1848705 (1) |
| 1,25 dihydroxy vitamin d3 |
32.87 |
5 |
9158000 (2), 8398907 (1), 8227169 (1) |
| phosphotyrosine |
29.39 |
5 |
15236912 (1), 1708091 (1), 9366562 (1) |
| phenylalanine |
26.39 |
11 |
9372970 (1), 8007983 (1), 2157180 (1), 1950818 (1) (see all 7) |
| hpaii |
23.46 |
2 |
1593906 (1), 1831986 (1) |
About this table
|
Transcripts for CSF1R(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005211
Sigma-Aldrich siRNA and siRNA Panels for CSF1R  Sigma-Aldrich shRNA Panels and shRNA for CSF1R  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005211 REFSEQ mRNAs for CSF1R gene: NM_005211.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005211               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005211                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005211                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005211  Additional cDNA sequence: AB208819.1 AK294467.1 AK304491.1 BC047521.1 BC129939.1 BX648599.1 CR613133.1 EU826593.1 M14193.1 X03663.1 11 DOTS entries: DT.97770481 DT.100814450 DT.452452 DT.101965758 DT.100813294 DT.95333580 DT.120845509 DT.97833313 DT.120845651 DT.91936822 DT.95214896 24/463 AceView cDNA sequences (see all 463
):CK300063 BQ709453 AA368051 BP360429 BM704575 BM702001 BU069362 CR593034 BF377002 CD518518 CD369309 BX479433 CR613133 R70545 CD369943 BM689263 CN483678 BU069568 CR612121 AA912447 AA284843 M14193 AA359391 AI590783
highest scoring ESTs for CSF1R:X03663 AL548995 AA193563 AA233785 AA233793 AA236817 AA252920 AA253063 AA255450 AA256557 Unigene Cluster for CSF1R: Colony stimulating factor 1 receptor Hs.586219 [show with all ESTs]Unigene Representative Sequence: NM_005211
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000286301
ENST00000394307
|
Expression for CSF1R
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CSF1R expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CSF1R
1 / 2 / 3 3 probe-sets matching CSF1R gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.586219
Expression variation in blood from EXPOLDB for CSF1R UniProtKB/Swiss-Prot: CSF1R_HUMAN, P07333Tissue specificity: Expressed in bone marrow and in differentiated blood mononuclear cells |
Orthologs for CSF1R
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CSF1R gene from 5/7 species (see all 7
)
About this table Species with no ortholog for CSF1R
ENSEMBL Gene Tree for CSF1R | Paralogs for CSF1R(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CSF1R gene
- KIT2 FLT32
|
SNPs/Variants for CSF1R(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CSF1R (up to first 250kb)
|
Disorders & Mutations for CSF1R
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 164770 10/61 Novoseek disease relationships for CSF1R gene (see all 61
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| 5q- syndrome |
69.55 |
3 |
9624537 (1), 1613006 (1) |
| malignant histiocytosis |
63.25 |
1 |
8352523 (1) |
| myeloid leukemia |
61.47 |
5 |
18337452 (1), 8462021 (1), 2214871 (1), 1942539 (1) (see all 5) |
| leukemia |
54.55 |
34 |
8493986 (3), 18337452 (2), 7845011 (2), 7950916 (2) (see all 16) |
| myelodysplastic syndromes |
53.85 |
6 |
7858491 (2), 8127154 (1), 7694008 (1), 1942539 (1) |
| leukemogenesis |
51.73 |
6 |
1518154 (1), 17960171 (1), 14654075 (1), 2154646 (1) (see all 5) |
| leukemia myelomonocytic acute |
46.31 |
2 |
1831986 (1), 2154646 (1) |
| preleukemia |
44.06 |
1 |
1420444 (1) |
| breast carcinoma |
40.76 |
22 |
7845678 (3), 9191055 (2), 7846733 (2), 10554038 (2) (see all 13) |
| tumors |
40.38 |
70 |
10419732 (4), 1825026 (3), 11775455 (2), 17332318 (2) (see all 45) |
About this table
Human Gene Mutation Database: CSF1R Genetic Association Database: CSF1R Human Genome Epidemiology Navigator: CSF1R (6 documents)
|
Medical News for CSF1R(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CSF1R (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/445 PubMed articles for CSF1R gene (see all 445
):- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)3, 4 Liu T.... Smith R.D. (2005)
- Association of the T allele of an intronic single nucleotide polymorphism in the colony stimulating factor 1 receptor with Crohn's disease: a case-control study. (PubMed id 15144560)3, 6 Zapata-Velandia A....Mannick E.E. (2004)
- [Detection of two polymorphic sites in the human c-fms gene: allele frequency and genotype in some populations of Russia] (PubMed id 11852791)3, 6 Romashchenko A.G....Voevoda M.I. (2002)
- Sequence analysis of two genomic regions containing the KIT and the FMS receptor tyrosine kinase genes. (PubMed id 9027509)3, 4 Andre C.... Galibert F. (1997)
- Localization of the 5' end of the MCF2 oncogene to human chromosome 15q15----q23. (PubMed id 1611909)2, 3 Galland F....Birnbaum D. (1992)
- Differential transcription of exon 1 of the human c-fms gene in placental trophoblasts and monocytes. (PubMed id 2524648)3, 4 Visvader J. and Verma I.M. (1989)
- Nucleotide sequence and structural organization of the human FMS proto-oncogene. (PubMed id 2524025)3, 4 Hampe A.... Galibert F. (1989)
- Structural alteration of viral homologue of receptor proto-oncogene fms at carboxyl terminus. (PubMed id 2421165)3, 4 Coussens L.... Ullrich A. (1986)
- The amino-terminal domain of the v-fms oncogene product includes a functional signal peptide that directs synthesis of a transforming glycoprotein in the absence of feline leukemia virus gag sequences. (PubMed id 3525854)3, 4 Wheeler E.F.... Sherr C.J. (1986)
- 'Replacement' of COOH-terminal truncation of v-fms with c-fms sequences markedly reduces transformation potential. (PubMed id 3532121)3, 4 Browning P.J.... Nienhuis A.W. (1986)
|
Search for CSF1R
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CSF1R
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CSF1R
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CSF1R(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CSF1R(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CSF1R:

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