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Aliases for CRYM-AS1 Gene

Subcategory (RNA class) for CRYM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CRYM-AS1 Gene

  • CRYM Antisense RNA 1 2 3 4 5
  • CRYM Antisense RNA 1 (Non-Protein Coding) 2 3
  • NCRNA00169 3 4
  • CRYM Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 169 2

External Ids for CRYM-AS1 Gene

Previous HGNC Symbols for CRYM-AS1 Gene

  • NCRNA00169

Previous GeneCards Identifiers for CRYM-AS1 Gene

  • GC16P021312

Summaries for CRYM-AS1 Gene

GeneCards Summary for CRYM-AS1 Gene

CRYM-AS1 (CRYM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRYM-AS1 Gene

Genomics for CRYM-AS1 Gene

Regulatory Elements for CRYM-AS1 Gene

Enhancers for CRYM-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F021597 1.6 FANTOM5 ENCODE 10.5 +298.7 298718 4.6 CREB3L1 MLX ZFP64 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC MEF2D METTL9 IGSF6 CRYM-AS1 THUMPD1 SMG1P1 ENSG00000260510 CRYM LOC101927814 PIR54824
GH16F020896 1.5 FANTOM5 ENCODE 10.5 -398.2 -398194 11.5 CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 MEF2D DCUN1D3 THUMPD1 ACSM3 ACSM1 CRYM-AS1 ENSG00000260510 LYRM1 CRYM PIR35456
GH16F021950 1.2 ENCODE 10.5 +651.9 651857 3.9 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A YBX1 DMAP1 ZNF2 C16orf52 CRYM-AS1 NPIPB4 GC16M021951 UQCRC2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CRYM-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CRYM-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001800286 751 2001 HDGF MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for CRYM-AS1 Gene

Chromosome:
16
Start:
21,300,849 bp from pter
End:
21,318,591 bp from pter
Size:
17,743 bases
Orientation:
Plus strand

Genomic View for CRYM-AS1 Gene

Genes around CRYM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CRYM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CRYM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRYM-AS1 Gene

Proteins for CRYM-AS1 Gene

  • Protein details for CRYM-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NIL9-CRAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein CRYM-AS1
    Protein Accession:
    A6NIL9
    Secondary Accessions:
    • B3KVZ2

    Protein attributes for CRYM-AS1 Gene

    Size:
    109 amino acids
    Molecular mass:
    12312 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CRYM-AS1 Gene

Post-translational modifications for CRYM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CRYM-AS1 Gene

Domains & Families for CRYM-AS1 Gene

Protein Domains for CRYM-AS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CRYM-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CRYM-AS1 Gene

Function for CRYM-AS1 Gene

Phenotypes for CRYM-AS1 Gene

GenomeRNAi human phenotypes for CRYM-AS1:
genes like me logo Genes that share phenotypes with CRYM-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CRYM-AS1 Gene

Localization for CRYM-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CRYM-AS1 Gene

Membrane; Single-pass membrane protein.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CRYM-AS1 Gene

Pathways & Interactions for CRYM-AS1 Gene

SuperPathways for CRYM-AS1 Gene

No Data Available

Interacting Proteins for CRYM-AS1 Gene

Gene Ontology (GO) - Biological Process for CRYM-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CRYM-AS1 Gene

Transcripts for CRYM-AS1 Gene

mRNA/cDNA for CRYM-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CRYM-AS1 Gene

CRYM antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CRYM-AS1 Gene

No ASD Table

Relevant External Links for CRYM-AS1 Gene

GeneLoc Exon Structure for
CRYM-AS1
ECgene alternative splicing isoforms for
CRYM-AS1

Expression for CRYM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CRYM-AS1 Gene

SOURCE GeneReport for Unigene cluster for CRYM-AS1 Gene:

Hs.578949
genes like me logo Genes that share expression patterns with CRYM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CRYM-AS1 Gene

Orthologs for CRYM-AS1 Gene

Evolution for CRYM-AS1 Gene

ENSEMBL:
Gene Tree for CRYM-AS1 (if available)
TreeFam:
Gene Tree for CRYM-AS1 (if available)

No data available for Orthologs for CRYM-AS1 Gene

Paralogs for CRYM-AS1 Gene

No data available for Paralogs for CRYM-AS1 Gene

Variants for CRYM-AS1 Gene

Sequence variations from dbSNP and Humsavar for CRYM-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10604928 -- 21,307,636(+) TATAT(-/AT)GTGTA intron-variant
rs10639592 -- 21,314,760(+) CACTC(-/TT)GTTGC intron-variant
rs111466705 -- 21,309,219(+) AATCT(C/T)GGCTC intron-variant
rs111481425 -- 21,318,020(+) TGTGC(A/G)CACAC nc-transcript-variant
rs111507564 -- 21,316,314(+) CTCAT(G/T)TGCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CRYM-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2714068 CNV deletion 23290073
esv2758636 CNV gain+loss 17122850
esv34235 CNV gain 17911159
esv3553221 CNV deletion 23714750
esv3638164 CNV gain 21293372
nsv436835 CNV insertion 17901297
nsv526247 CNV loss 19592680
nsv571623 CNV gain 21841781

Relevant External Links for CRYM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CRYM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CRYM-AS1 Gene

Disorders for CRYM-AS1 Gene

Relevant External Links for CRYM-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CRYM-AS1

No disorders were found for CRYM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CRYM-AS1 Gene

Publications for CRYM-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CRYM-AS1 Gene

Sources for CRYM-AS1 Gene

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