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Aliases for CRYM-AS1 Gene

Subcategory (RNA class) for CRYM-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for CRYM-AS1 Gene

  • CRYM Antisense RNA 1 2 3 4
  • CRYM Antisense RNA 1 (Non-Protein Coding) 2 3
  • NCRNA00169 3 4
  • CRYM Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 169 2

External Ids for CRYM-AS1 Gene

ORGUL Members for CRYM-AS1 Gene

Previous HGNC Symbols for CRYM-AS1 Gene

  • NCRNA00169

Previous GeneCards Identifiers for CRYM-AS1 Gene

  • GC16P021312

Summaries for CRYM-AS1 Gene

GeneCards Summary for CRYM-AS1 Gene

CRYM-AS1 (CRYM Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRYM-AS1 Gene

Genomics for CRYM-AS1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CRYM-AS1 Gene

Start:
21,300,849 bp from pter
End:
21,318,591 bp from pter
Size:
17,743 bases
Orientation:
Plus strand

Genomic View for CRYM-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CRYM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRYM-AS1 Gene

No data available for Regulatory Elements for CRYM-AS1 Gene

Proteins for CRYM-AS1 Gene

  • Protein details for CRYM-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NIL9-CRAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein CRYM-AS1
    Protein Accession:
    A6NIL9
    Secondary Accessions:
    • B3KVZ2

    Protein attributes for CRYM-AS1 Gene

    Size:
    109 amino acids
    Molecular mass:
    12312 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CRYM-AS1 Gene

Proteomics data for CRYM-AS1 Gene at MOPED

Post-translational modifications for CRYM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CRYM-AS1 Gene

Domains for CRYM-AS1 Gene

Gene Families for CRYM-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for CRYM-AS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CRYM-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CRYM-AS1 Gene

Function for CRYM-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CRYM-AS1 Gene

Localization for CRYM-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CRYM-AS1 Gene

Membrane; Single-pass membrane protein.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CRYM-AS1 Gene

Pathways for CRYM-AS1 Gene

SuperPathways for CRYM-AS1 Gene

No Data Available

Interacting Proteins for CRYM-AS1 Gene

Gene Ontology (GO) - Biological Process for CRYM-AS1 Gene

None

No data available for Pathways by source for CRYM-AS1 Gene

Transcripts for CRYM-AS1 Gene

mRNA/cDNA for CRYM-AS1 Gene

(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CRYM-AS1 Gene

CRYM antisense RNA 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CRYM-AS1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CRYM-AS1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CRYM-AS1 Gene

No ASD Table

Relevant External Links for CRYM-AS1 Gene

GeneLoc Exon Structure for
CRYM-AS1
ECgene alternative splicing isoforms for
CRYM-AS1

Expression for CRYM-AS1 Gene

mRNA expression in normal human tissues for CRYM-AS1 Gene

SOURCE GeneReport for Unigene cluster for CRYM-AS1 Gene Hs.578949

genes like me logo Genes that share expressions with CRYM-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CRYM-AS1 Gene

Orthologs for CRYM-AS1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for CRYM-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Abca15 16
Species with no ortholog for CRYM-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CRYM-AS1 Gene

ENSEMBL:
Gene Tree for CRYM-AS1 (if available)
TreeFam:
Gene Tree for CRYM-AS1 (if available)

Paralogs for CRYM-AS1 Gene

No data available for Paralogs for CRYM-AS1 Gene

Variants for CRYM-AS1 Gene

Sequence variations from dbSNP and Humsavar for CRYM-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs161327 -- 21,308,231(+) aggcc(A/G)aggca intron-variant
rs1152838 -- 21,305,974(+) tccta(A/T)gtttc intron-variant
rs8048490 -- 21,307,480(+) acaaa(A/T)ttTTT intron-variant
rs10536875 -- 21,318,019(+) ACACA(-/CACA)GTCAG nc-transcript-variant
rs10604928 -- 21,307,636(+) TATAT(-/AT)GTGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CRYM-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv436835 CNV Insertion 17901297
nsv905576 CNV Gain 21882294
esv34235 CNV Gain 17911159
nsv526247 CNV Loss 19592680
dgv830e1 CNV Complex 17122850
esv2714068 CNV Deletion 23290073

Relevant External Links for CRYM-AS1 Gene

HapMap Linkage Disequilibrium report
CRYM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CRYM-AS1 Gene

Disorders for CRYM-AS1 Gene

No disorders were found for CRYM-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for CRYM-AS1 Gene

Publications for CRYM-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CRYM-AS1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate CRYM-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CRYM-AS1
    • Block miRNA regulation of CRYM-AS1 using miScript Target Protectors

    Sources for CRYM-AS1 Gene

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