CRYGA Gene
protein-coding GIFtS : 45
GCID: GC02 M209025
crystallin, gamma A (Previous symbol: CRYG1 )
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Aliasesfor CRYGA gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Crystallin, Gamma A 1 2 Gamma-Crystallin 52 3 CRYG11 2 3 5 Crystallin, Gamma 12 CRY-G-A1 Gamma-Crystallin A2 CRYG51 2 Gamma-A-Crystallin1
Export aliases for CRYGA gene to outside databases Previous GC identifers: GC02M207194 GC02M207750 GC02M208989 GC02M209228 GC02M208850 GC02M208733 GC02M200873
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Summariesfor CRYGA gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CRYGA : Crystallins are separated into two classes: taxon-specific, or enzyme, and ubiquitous. The latter class constitutes the major proteins of vertebrate eye lens and maintains the transparency and refractive index of the lens. Since lens central fiber cells lose their nuclei during development, these crystallins are made and then retained throughout life, making them extremely stable proteins. Mammalian lens crystallins are divided into alpha, beta, and gamma families; beta and gamma crystallins are also considered as a superfamily. Alpha and beta families are further divided into acidic and basic groups. Seven protein regions exist in crystallins: four homologous motifs, a connecting peptide, and N- and C-terminal extensions. Gamma-crystallins are a homogeneous group of highly symmetrical, monomeric proteins typically lacking connecting peptides and terminal extensions. They are differentially regulated after early development. Four gamma-crystallin genes (gamma-A through gamma-D) and three pseudogenes (gamma-E, gamma-F, gamma-G) are tandemly organized in a genomic segment as a gene cluster. Whether due to aging or mutations in specific genes, gamma-crystallins have been involved in cataract formation. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: CRGA_HUMAN, P11844 Function : Crystallins are the dominant structural components of the vertebrate eye lensGene Wiki entry for CRYGA
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Genomic Viewsfor CRYGA gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_005403.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CRYGA gene promoter: SRF NCX/Ncx SRF (504 AA) HTF MIF-1 LCR-F1 AREB6 PPAR-gamma1 c-Myb PPAR-gamma2 Other transcription factors Search SABiosciences Chromatin IP Primers for CRYGA Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CRYGA
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q34 Ensembl cytogenetic band: 2q34 HGNC cytogenetic band: 2q34 CRYGA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M209025: view genomic region
(about GC identifiers )
Start:
209,025,464 bp from pter
End:
209,028,300 bp from pter
Size:
2,837 bases
Orientation:
minus strand
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Proteinsfor CRYGA gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CRGA_HUMAN, P11844 (See
protein sequence )Recommended Name: Gamma-crystallin A Size : 174 amino acids; 20877 Da
Subunit : Monomer (By similarity)
1 PDB 3D structure from and Proteopedia for CRYGA :1LER (3D)
 
Secondary accessions : Q53ST5Explore the universe of human proteins at neXtProt for CRYGA: NX_P11844 CRYGA Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_055432.2 ENSEMBL proteins: ENSP00000302105 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005575 cellular_component
ND --
CRYGA for ontologies About GeneDecksing CRYGA Antibody Products: Assay Products for CRYGA:
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Protein
Domains / Familiesfor CRYGA gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CRYGA for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P11844 ProtoNet protein and cluster: P11844
2 Blocks protein families : IPB001064 Beta and gamma crystallin IPB011024 Gamma-crystallin related UniProtKB/Swiss-Prot: CRGA_HUMAN, P11844 Domain : Has a two-domain beta-structure, folded into four very similar Greek key motifsSimilarity : Belongs to the beta/gamma-crystallin familySimilarity : Contains 4 beta/gamma crystallin 'Greek key' domains
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Functionfor CRYGA gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: CRGA_HUMAN, P11844 Function : Crystallins are the dominant structural components of the vertebrate eye lens
Genatlas biochemistry entry for CRYGA : crystallin,gamma polypeptide A Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CRYGA (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CRYGAOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CRYGA (NM_014617 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CRYGA Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CRYGA
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005212 structural constituent of eye lens
NAS 12507494
CRYGA for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for CRYGA :Animal Models: 1 MGI mutant phenotype (inferred from 2 alleles ) (MGI details for Cryga) :
CRYGA for phenotypes About GeneDecksing
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Pathways & Interactionsfor CRYGA gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CRYGA Gene Ontology (GO): 3 biological process terms (GO ID links to tree view) : About this table
CRYGA for ontologies About GeneDecksing
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Drugs & Compoundsfor CRYGA gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CRYGA Search CenterWatch for drugs/clinical trials and news about CRYGA / CRGA
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Transcriptsfor CRYGA gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CRYGA gene: NM_014617.3 Unigene Cluster for CRYGA:
Crystallin, gamma A Hs.122566 [show with all ESTs ] Unigene Representative Sequence: BC114456 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000304502 (uc002vcq.4 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CRYGA (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CRYGAOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CRYGA (NM_014617 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CRYGA Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CRYGA
Additional cDNA sequence: BC114456.1 EF426311.1
2 DOTS entries : DT.307153 DT.120998479
12 AceView cDNA sequences :
BM698524 BM698997 BM667614 BM710792 NM_014617 BM710815 BX281946 BM667439 AI052518 BG207174 AA404481 AA780079 GeneLoc Exon Structure
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Expression for CRYGA gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CRYGA expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image CRYGA expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Eye Lens Eye Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See CRYGA Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CRYGA SOURCE GeneReport for Unigene cluster: Hs.122566 SABiosciences Custom PCR Arrays for CRYGA Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CRYGABrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat CRYGA QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CRYGA QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CRYGA
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Orthologsfor CRYGA gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for CRYGA gene from 1/7 species (see all 7 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
zebrafish (Danio rerio)
Actinopterygii
si:dkey-57a22.151
si:dkey-57a22.15
68.22(n) 60.47(a)
 
795575 NM_001123311.1 NP_001116783.1
ENSEMBL Gene Tree for CRYGA (if available)TreeFam Gene Tree for CRYGA (if available)
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Paralogsfor CRYGA gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CRYGA gene CRYBB3 2 CRYGB 2 CRYBA4 2 CRYBA1 2 CRYBB2 2 CRYGD 2 CRYBB1 2 CRYGC 2 CRYGN 2 CRYBA2 2 CRYGS 2 14 SIMAP similar genes for CRYGA using alignment to 2 protein entries: CRGA_HUMAN (see all proteins ):CRYGB CRYGD CRYGC CRYGS DKFZp434A0627 CRYGN CRYBA2 CRYBA1 CRYBB3 CRYBB1 CRYBA4 CRYBB2 AIM1L AIM1
CRYGA for paralogs About GeneDecksing
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Genomic Variantsfor CRYGA gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CRYGA (209025464 - 209028300 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CRYGA: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CRYGA
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Disorders
/ Diseasesfor CRYGA gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CRYGA for disorders About GeneDecksing
OMIM gene information: 123660
OMIM disorders : --2 diseases for CRYGA : About MalaCards cataract congenital cataracts 1 Novoseek disease relationship for CRYGA gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
cataract
54.6
1
12646746 (1)
Human Genome Epidemiology (HuGE) Navigator: CRYGA (1 document)Export disorders for CRYGA gene to outside databases
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Publicationsfor CRYGA gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CRYGA gene, integrated from 9 sources (see all 21 ): (articles sorted by number of sources associating them with CRYGA) Utopia : connect your pdf to the dynamic world of online information
Homology models of human gamma-crystallins: structural study of the extensive charge network in gamma-crystallins. (PubMed id 12507494) 1 , 2 Salim A. and Zaidi Z.H. (2003) Novel mutations in the gamma-crystallin genes cause autosomal dominant congenital cataracts. (PubMed id 12011157) 1 , 2 Santhiya S.T.... Graw J. (2002) Gamma-crystallins of the human eye lens: expression analysis of five members of the gene family. (PubMed id 3670288) 1 , 2 Meakin S.O.... Breitman M.L. (1987) Analysis of single nucleotide polymorphisms of CRYGA and CRYGB genes in control population of western Indian origin. (PubMed id 19384013) 1 Kapur S....Rajkumar S. (2009) Lens aging: effects of crystallins. (PubMed id 19463898) 1 Sharma K.K. and Santhoshkumar P. (2009) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 2 Hillier L.W....Wilson R.K. (2005) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Structure of the crystallins. (PubMed id 10627816) 1 Slingsby C. and Clout N.J. (1999) The crystallins: genes, proteins and diseases. (PubMed id 9426193) 1 Graw J. (1997) Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548) 1 Bonaldo M.F.... Soares M.B. (1996)
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External Searches for CRYGA gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CRYGA gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CRYGA gene
(According to HUGE )
About This Section --
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Specialized Databases showing CRYGA gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CRYGA Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for CRYGA gene: Search GeneIP for patents involving CRYGA GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CRYGA gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for CRYGA OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CRYGA OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CRYGA OriGene Protein Over-expression Lysate for CRYGA Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CRYGA Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CRYGA OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CRYGA Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for CRYGA OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CRYGA OriGene Custom Protein Services for CRYGA OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CRYGA QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CRYGA QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CRYGA QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CRYGA QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CRYGA QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CRYGA
Search Tocris compounds for CRYGA
ThermoFisher Antibodies for CRYGA
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CRYGA
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Aliases for CRYGA
Databases for CRYGA
Disorders / Diseases for CRYGA
Domains / Families for CRYGA
Drugs / Compounds for CRYGA
Expression for CRYGA
Function for CRYGA
Genomic Views for CRYGA
Intellectual Property for CRYGA
Orthologs for CRYGA
Paralogs for CRYGA
Pathways / Interactions for CRYGA
Products for CRYGA
Proteins for CRYGA
Publications for CRYGA
Search Box for CRYGA
Summaries for CRYGA
Transcripts for CRYGA
Variants for CRYGA
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