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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CRYGA Gene

protein-coding   GIFtS: 45
GCID: GC02M209025

crystallin, gamma A


(Previous symbol: CRYG1)
 Explore 2 diseases affiliated with
CRYGA via our new
 Human Malady Compendium 
Biological research products
for CRYGA
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Crystallin, Gamma A1 2     Gamma-Crystallin 52 3
CRYG11 2 3 5     Crystallin, Gamma 12
CRY-G-A1     Gamma-Crystallin A2
CRYG51 2     Gamma-A-Crystallin1

External Ids:    HGNC: 24081   Entrez Gene: 14182   Ensembl: ENSG000001685827   OMIM: 1236605   UniProtKB: P118443   

Export aliases for CRYGA gene to outside databases

Previous GC identifers: GC02M207194 GC02M207750 GC02M208989 GC02M209228 GC02M208850 GC02M208733 GC02M200873


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CRYGA:
Crystallins are separated into two classes: taxon-specific, or enzyme, and ubiquitous. The latter class constitutes the
major proteins of vertebrate eye lens and maintains the transparency and refractive index of the lens. Since lens
central fiber cells lose their nuclei during development, these crystallins are made and then retained throughout
life, making them extremely stable proteins. Mammalian lens crystallins are divided into alpha, beta, and gamma
families; beta and gamma crystallins are also considered as a superfamily. Alpha and beta families are further divided
into acidic and basic groups. Seven protein regions exist in crystallins: four homologous motifs, a connecting
peptide, and N- and C-terminal extensions. Gamma-crystallins are a homogeneous group of highly symmetrical, monomeric
proteins typically lacking connecting peptides and terminal extensions. They are differentially regulated after early
development. Four gamma-crystallin genes (gamma-A through gamma-D) and three pseudogenes (gamma-E, gamma-F, gamma-G)
are tandemly organized in a genomic segment as a gene cluster. Whether due to aging or mutations in specific genes,
gamma-crystallins have been involved in cataract formation. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: CRGA_HUMAN, P11844
Function: Crystallins are the dominant structural components of the vertebrate eye lens

Gene Wiki entry for CRYGA


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.1  NT_005403.17  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CRYGA gene promoter:
         SRF   NCX/Ncx   SRF (504 AA)   HTF   MIF-1   LCR-F1   AREB6   PPAR-gamma1   c-Myb   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCRYGA promoter sequence
   Search SABiosciences Chromatin IP Primers for CRYGA

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CRYGA


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q34   Ensembl cytogenetic band:  2q34   HGNC cytogenetic band: 2q34

CRYGA Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CRYGA gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M209025:  view genomic region     (about GC identifiers)

Start:
209,025,464 bp from pter      End:
209,028,300 bp from pter
Size:
2,837 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CRGA_HUMAN, P11844 (See protein sequence)
Recommended Name: Gamma-crystallin A  
Size: 174 amino acids; 20877 Da
Subunit: Monomer (By similarity)
1 PDB 3D structure from and Proteopedia for CRYGA:
1LER (3D)    
Secondary accessions: Q53ST5

Explore the universe of human proteins at neXtProt for CRYGA: NX_P11844

CRYGA Protein expression data from MOPED and PaxDb:    About this image 

Estimated protein expression log10 (pmol).

REFSEQ proteins: NP_055432.2  
ENSEMBL proteins: 
 ENSP00000302105  

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005575cellular_component ND--


CRYGA for ontologies           About GeneDecksing



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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

CRYGA for domains           About GeneDecksing

2 InterPro domains/families:
 IPR001064 Beta/gamma_crystallin
 IPR011024 G_crystallin-rel

Graphical View of Domain Structure for InterPro Entry P11844

ProtoNet protein and cluster: P11844

2 Blocks protein families:
IPB001064 Beta and gamma crystallin
IPB011024 Gamma-crystallin related


UniProtKB/Swiss-Prot: CRGA_HUMAN, P11844
Domain: Has a two-domain beta-structure, folded into four very similar Greek key motifs
Similarity: Belongs to the beta/gamma-crystallin family
Similarity: Contains 4 beta/gamma crystallin 'Greek key' domains


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

     UniProtKB/Swiss-Prot: CRGA_HUMAN, P11844
Function: Crystallins are the dominant structural components of the vertebrate eye lens

     Genatlas biochemistry entry for CRYGA:
crystallin,gamma polypeptide A

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Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005212structural constituent of eye lens NAS12507494


CRYGA for ontologies           About GeneDecksing


1 GenomeRNAi human phenotype for CRYGA:
 Decreased Salmonella enterica  

Animal Models:
     1 MGI mutant phenotype (inferred from 2 alleles(MGI details for Cryga):
 vision/eye 

CRYGA for phenotypes           About GeneDecksing


(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CRYGA

Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0001654eye development ----
GO:0002088lens development in camera-type eye IEA--
GO:0007601visual perception NAS3670288


CRYGA for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
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Browse Tocris compounds for CRYGA
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CRYGA gene: 
NM_014617.3  

Unigene Cluster for CRYGA:

Crystallin, gamma A
Hs.122566  [show with all ESTs]
Unigene Representative Sequence: BC114456
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000304502(uc002vcq.4)

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Inhib. RNA
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Clone
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Additional cDNA sequence: 

BC114456.1 EF426311.1 

2 DOTS entries:

DT.307153  DT.120998479 

12 AceView cDNA sequences:

BM698524 BM698997 BM667614 BM710792 NM_014617 BM710815 BX281946 BM667439 
AI052518 BG207174 AA404481 AA780079 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CRYGA expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)

About this image

CRYGA expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell 
Tissue Anatomical Compartment CellCategory (developmental path)
EyeLensEye
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization

See CRYGA Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CRYGA

SOURCE GeneReport for Unigene cluster: Hs.122566
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for CRYGA gene from 1/7 species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
zebrafish
(Danio rerio)
Actinopterygii si:dkey-57a22.151 si:dkey-57a22.15 68.22(n)
60.47(a)
  795575  NM_001123311.1  NP_001116783.1 


ENSEMBL Gene Tree for CRYGA (if available)
TreeFam Gene Tree for CRYGA (if available) 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for CRYGA gene
CRYBB32  CRYGB2  CRYBA42  CRYBA12  CRYBB22  CRYGD2  CRYBB12  CRYGC2  
CRYGN2  CRYBA22  CRYGS2  
14 SIMAP similar genes for CRYGA using alignment to 2 protein entries:     CRGA_HUMAN (see all proteins):
CRYGB    CRYGD    CRYGC    CRYGS    DKFZp434A0627    CRYGN
CRYBA2    CRYBA1    CRYBB3    CRYBB1    CRYBA4    CRYBB2
AIM1L    AIM1

CRYGA for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/136 NCBI SNPs in CRYGA are shown (see all 136    About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1850680641,2
--209025018(+) TCTACC/TAGTAA 1 -- int10--------
rs67290511,2
C,F,A,H,--209025027(+) AAGTAG/TCAGAG 1 -- int123Minor allele frequency- T:0.21NS EA NA WA 2446
rs1889834721,2
--209025102(+) CTTCTC/TCACGT 1 -- int10--------
rs24413491,2
C,A,H,--209025193(+) CGGGCA/GGATCA 1 -- int10--------
rs24413501,2
C,H,--209025226(+) CAGCCT/CGACCA 1 -- int17Minor allele frequency- C:0.00NA WA 14
rs134305641,2
C,--209025300(+) taatcC/Acagtt 1 -- int11Minor allele frequency- A:0.00NA 2
rs1809104301,2
--209025331(+) AGGATG/TGATTG 1 -- int10--------
rs1863156071,2
--209025373(+) GATAGC/TGCCAT 1 -- int10--------
rs2017895741,2
F--209025490(+) ATTTAT/CTATGT 1 -- ut311Minor allele frequency- C:0.01EU 1323
rs1895421841,2
C,--209025502(+) TCTATA/GGGGAT 1 -- ut310--------

HapMap Linkage Disequilibrium report for CRYGA (209025464 - 209028300 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for CRYGA: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

CRYGA for disorders           About GeneDecksing

OMIM gene information: 123660    OMIM disorders: --

2 diseases for CRYGA:    About MalaCards
cataract    congenital cataracts

1 Novoseek disease relationship for CRYGA gene    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
cataract 54.6 1 12646746 (1)

Human Genome Epidemiology (HuGE) Navigator: CRYGA (1 document)

Export disorders for CRYGA gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for CRYGA gene, integrated from 9 sources (see all 21):
(articles sorted by number of sources associating them with CRYGA)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Homology models of human gamma-crystallins: structural study of the extensive charge network in gamma-crystallins. (PubMed id 12507494)1, 2 Salim A. and Zaidi Z.H. (2003)
  2. Novel mutations in the gamma-crystallin genes cause autosomal dominant congenital cataracts. (PubMed id 12011157)1, 2 Santhiya S.T.... Graw J. (2002)
  3. Gamma-crystallins of the human eye lens: expression analysis of five members of the gene family. (PubMed id 3670288)1, 2 Meakin S.O.... Breitman M.L. (1987)
  4. Analysis of single nucleotide polymorphisms of CRYGA and CRYGB genes in control population of western Indian origin. (PubMed id 19384013)1 Kapur S....Rajkumar S. (2009)
  5. Lens aging: effects of crystallins. (PubMed id 19463898)1 Sharma K.K. and Santhoshkumar P. (2009)
  6. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W....Wilson R.K. (2005)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  8. Structure of the crystallins. (PubMed id 10627816)1 Slingsby C. and Clout N.J. (1999)
  9. The crystallins: genes, proteins and diseases. (PubMed id 9426193)1 Graw J. (1997)
  10. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (1996)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 1418 HGNC: 2408 AceView: CRYGA Ensembl:ENSG00000168582 euGenes: HUgn1418
ECgene: CRYGA H-InvDB: CRYGA

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for CRYGA Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for CRYGA gene:
Search GeneIP for patents involving CRYGA

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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Advanced Cell Diagnostics
About This Section

 
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 OriGene Custom Antibody Services for CRYGA   OriGene Custom Protein Services for CRYGA  
 OriGene Custom Immunoassay Development  

 
 
 QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CRYGA
 QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CRYGA
 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CRYGA
 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CRYGA
 QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CRYGA
 QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CRYGA
 GenScript Custom Purified and Recombinant Proteins Services for CRYGA GenScript cDNA clones with any tag delivered in your preferred vector for CRYGA
 GenScript Custom Assay Services for CRYGA GenScript Custom Superior Antibodies Services for CRYGA
 GenScript Custom overexpressing Cell Line Services for CRYGA CloneReady with Over 120,000 Genes
 Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
 Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
 Custom Peptide Services
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 Regulatory tfbs in CRYGA promoter
 Search Chromatin IP Primers for CRYGA
 RT2 qPCR Primer Assay in human, mouse / rat CRYGA
 Search GNC Networks for CRYGA
 SABiosciences Custom PCR Arrays for CRYGA
 Search Tocris compounds for CRYGA
 Browse Sino Biological Proteins and Antibodies
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 Rabbit Monoclonal Antibody Platform
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
 Novus Biologicals
 Novus Tissue Slides
 Search for Antibodies for CRYGA at Abcam
 See all of Abcam's Antibodies, Kits and Proteins for CRYGA
 Custom Antibody / Protein Production Service
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 Browse ProSpec Recombinant Proteins




 Browse ELISAs, CLIAs, Proteins, and Antibodies at Uscn
 Search LifeMap BioReagents cell lines for CRYGA
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 Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for CRYGA
 Browse SwitchGear 3'UTR luciferase reporter plasmids for CRYGA
 SwitchGear Promoter luciferase reporter plasmids for CRYGA
 ThermoFisher Antibodies for CRYGA
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CRYGA
       
GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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VWF
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von Willebrand factor
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