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Aliases for CRTC3-AS1 Gene

Subcategory (RNA class) for CRTC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CRTC3-AS1 Gene

  • CRTC3 Antisense RNA 1 2 3 5

External Ids for CRTC3-AS1 Gene

Summaries for CRTC3-AS1 Gene

GeneCards Summary for CRTC3-AS1 Gene

CRTC3-AS1 (CRTC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CRTC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRTC3-AS1 Gene

Genomics for CRTC3-AS1 Gene

Regulatory Elements for CRTC3-AS1 Gene

Enhancers for CRTC3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H090685 1.4 Ensembl ENCODE dbSUPER 0.3 +30.1 30140 3.8 HDAC1 PKNOX1 TBL1XR1 RB1 BATF TCF12 ATF7 ETV6 RUNX3 CREM GC15P090686 CRTC3-AS1
GH15H090690 1 ENCODE dbSUPER 0.3 +25.6 25614 2.5 PKNOX1 ZNF687 TBL1XR1 SMAD5 ZBED1 TRIM22 EBF1 FOXA1 POLR2A BCL11A GC15P090686 CRTC3-AS1
GH15H090693 1 ENCODE dbSUPER 0.3 +23.3 23287 0.2 CTCF ZMYM3 MAX BATF RAD21 RFX5 ZNF121 CC2D1A FOXK2 SMC3 GC15P090686 CRTC3-AS1
GH15H090711 0.7 ENCODE 0.4 +5.6 5622 1.3 HDGF ZNF146 ZNF687 TRIM22 FEZF1 ELF1 EBF1 ZNF366 TARDBP IKZF1 ENSG00000200677 FES MAN2A2 CRTC3 CRTC3-AS1 GC15P090686
GH15H090702 0.6 ENCODE 0.4 +15.1 15067 0.1 CTCF HDGF SOX6 ZSCAN4 BCL6B ZBTB33 FOXA1 ENSG00000200677 FES MAN2A2 CRTC3 CRTC3-AS1 GC15P090686
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CRTC3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CRTC3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000081110 -159 1801 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 CBX5 ZNF207

Genomic Locations for CRTC3-AS1 Gene

Genomic Locations for CRTC3-AS1 Gene
chr15:90,620,007-90,717,141
(GRCh38/hg38)
Size:
97,135 bases
Orientation:
Minus strand
chr15:91,163,239-91,260,372
(GRCh37/hg19)

Genomic View for CRTC3-AS1 Gene

Genes around CRTC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CRTC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CRTC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRTC3-AS1 Gene

Proteins for CRTC3-AS1 Gene

Post-translational modifications for CRTC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CRTC3-AS1 Gene

Domains & Families for CRTC3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CRTC3-AS1 Gene

Function for CRTC3-AS1 Gene

Phenotypes From GWAS Catalog for CRTC3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CRTC3-AS1 Gene

Localization for CRTC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CRTC3-AS1 Gene

Pathways & Interactions for CRTC3-AS1 Gene

SuperPathways for CRTC3-AS1 Gene

No Data Available

Interacting Proteins for CRTC3-AS1 Gene

Gene Ontology (GO) - Biological Process for CRTC3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CRTC3-AS1 Gene

Drugs & Compounds for CRTC3-AS1 Gene

No Compound Related Data Available

Transcripts for CRTC3-AS1 Gene

mRNA/cDNA for CRTC3-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CRTC3-AS1 Gene

No ASD Table

Relevant External Links for CRTC3-AS1 Gene

GeneLoc Exon Structure for
CRTC3-AS1
ECgene alternative splicing isoforms for
CRTC3-AS1

Expression for CRTC3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CRTC3-AS1 Gene

genes like me logo Genes that share expression patterns with CRTC3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CRTC3-AS1 Gene

Orthologs for CRTC3-AS1 Gene

Evolution for CRTC3-AS1 Gene

ENSEMBL:
Gene Tree for CRTC3-AS1 (if available)
TreeFam:
Gene Tree for CRTC3-AS1 (if available)

No data available for Orthologs for CRTC3-AS1 Gene

Paralogs for CRTC3-AS1 Gene

No data available for Paralogs for CRTC3-AS1 Gene

Variants for CRTC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CRTC3-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs193921108 Uncertain significance 90,638,566(+) AGCCC(A/C/G/T)GCGCC intron-variant, reference, missense
rs552669203 Uncertain significance 90,717,375(+) GGCGC(G/T)GCGGC upstream-variant-2KB, utr-variant-5-prime
rs577293550 Uncertain significance 90,717,380(+) GGCGG(C/T)CGTGG upstream-variant-2KB, utr-variant-5-prime
rs886051549 Uncertain significance 90,717,416(+) GGTTC(C/T)GTCCG upstream-variant-2KB, utr-variant-5-prime
rs547768822 Benign 90,717,456(+) CGCGC(C/G)TAACT intron-variant, upstream-variant-2KB

Relevant External Links for CRTC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CRTC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CRTC3-AS1 Gene

Disorders for CRTC3-AS1 Gene

Relevant External Links for CRTC3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CRTC3-AS1

No disorders were found for CRTC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CRTC3-AS1 Gene

Publications for CRTC3-AS1 Gene

No publications were found for CRTC3-AS1 Gene.

Products for CRTC3-AS1 Gene

Sources for CRTC3-AS1 Gene

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