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Aliases for CROCCP3 Gene

Aliases for CROCCP3 Gene

  • Ciliary Rootlet Coiled-Coil, Rootletin Pseudogene 3 2 3 5
  • Ciliary Rootlet Coiled-Coil, Rootletin-Like 2 2 3
  • CROCCL2 3 4
  • Ciliary Rootlet Coiled-Coil Protein Pseudogene 3 4
  • DJ798A10.2 3
  • KIAA1922 4

External Ids for CROCCP3 Gene

Previous HGNC Symbols for CROCCP3 Gene

  • CROCCL2

Previous GeneCards Identifiers for CROCCP3 Gene

  • GC01M016794
  • GC01M015311

Summaries for CROCCP3 Gene

GeneCards Summary for CROCCP3 Gene

CROCCP3 (Ciliary Rootlet Coiled-Coil, Rootletin Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CROCCP3 Gene

Genomics for CROCCP3 Gene

Regulatory Elements for CROCCP3 Gene

Enhancers for CROCCP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F016498 1 FANTOM5 ENCODE 16 +0.2 187 2.0 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF121 GTF3C2 GLIS2 ZNF143 ENSG00000237938 NECAP2 CROCCP3 SPATA21 SPEN ENSG00000224621 RPS16P1 DDI2 RCC2 FAM131C
GH01F016513 0.6 ENCODE 7.2 -14.8 -14766 2.2 HDGF PKNOX1 ARNT FEZF1 ZNF2 ZNF121 KLF7 YY2 TSHZ1 ZNF518A MST1P2 CROCCP3 NECAP2 RNU1-1 GC01M016499
GH01F016520 0.2 ENCODE 7.1 -21.4 -21375 1.1 TBP ZNF175 ZNF589 ZNF584 ZBTB33 TAF7 MAFK EZH2 CROCCP3 LINC01772 LOC100421279 LOC105376796 GC01M016521
GH01F016763 1 Ensembl ENCODE 6.6 -266.5 -266549 3.7 ARID4B DMAP1 YY1 NCOA1 MXD4 KAT8 MIER3 RCOR2 ZNF792 TEAD3 MST1P2 CROCCP3 NBPF1 MST1L GC01P016756
GH01F016611 0.2 ENCODE 6.5 -113.5 -113491 3.2 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 LINC01772 SPEN CROCCP3 NBPF1 PIR60289
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CROCCP3 on UCSC Golden Path with GeneCards custom track

Promoters for CROCCP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000279662 157 2201 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF121 GTF3C2 GLIS2 ZNF143

Genomic Location for CROCCP3 Gene

Chromosome:
1
Start:
16,467,436 bp from pter
End:
16,499,257 bp from pter
Size:
31,822 bases
Orientation:
Minus strand

Genomic View for CROCCP3 Gene

Genes around CROCCP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CROCCP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CROCCP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CROCCP3 Gene

Proteins for CROCCP3 Gene

  • Protein details for CROCCP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVE0-CROL2_HUMAN
    Recommended name:
    Putative ciliary rootlet coiled-coil protein-like 2 protein
    Protein Accession:
    Q8IVE0
    Secondary Accessions:
    • Q96PW6

    Protein attributes for CROCCP3 Gene

    Size:
    287 amino acids
    Molecular mass:
    33334 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB67815.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for CROCCP3 Gene

Post-translational modifications for CROCCP3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CROCCP3 Gene

Domains & Families for CROCCP3 Gene

Protein Domains for CROCCP3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CROCCP3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IVE0

UniProtKB/Swiss-Prot:

CROL2_HUMAN :
  • Belongs to the rootletin family.
Family:
  • Belongs to the rootletin family.
genes like me logo Genes that share domains with CROCCP3: view

No data available for Gene Families for CROCCP3 Gene

Function for CROCCP3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CROCCP3 Gene

Localization for CROCCP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CROCCP3 Gene

Pathways & Interactions for CROCCP3 Gene

SuperPathways for CROCCP3 Gene

No Data Available

Interacting Proteins for CROCCP3 Gene

Gene Ontology (GO) - Biological Process for CROCCP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CROCCP3 Gene

Transcripts for CROCCP3 Gene

Unigene Clusters for CROCCP3 Gene

Ciliary rootlet coiled-coil, rootletin pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CROCCP3 Gene

No ASD Table

Relevant External Links for CROCCP3 Gene

GeneLoc Exon Structure for
CROCCP3
ECgene alternative splicing isoforms for
CROCCP3

Expression for CROCCP3 Gene

mRNA expression in normal human tissues for CROCCP3 Gene

mRNA differential expression in normal tissues according to GTEx for CROCCP3 Gene

This gene is overexpressed in Brain - Cerebellum (x4.9) and Brain - Cerebellar Hemisphere (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of CROCCP3 Gene:

CROCCP3

SOURCE GeneReport for Unigene cluster for CROCCP3 Gene:

Hs.597881
genes like me logo Genes that share expression patterns with CROCCP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CROCCP3 Gene

Orthologs for CROCCP3 Gene

Evolution for CROCCP3 Gene

ENSEMBL:
Gene Tree for CROCCP3 (if available)
TreeFam:
Gene Tree for CROCCP3 (if available)

No data available for Orthologs for CROCCP3 Gene

Paralogs for CROCCP3 Gene

(1) SIMAP similar genes for CROCCP3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CROCCP3: view

No data available for Paralogs for CROCCP3 Gene

Variants for CROCCP3 Gene

Sequence variations from dbSNP and Humsavar for CROCCP3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10907229 -- 16,484,576(+) CCCTC(C/T)TACAA intron-variant
rs111287650 -- 16,486,770(+) CATTT(C/T)GGGAG intron-variant
rs111556653 -- 16,479,666(+) TTCAC(C/T)GCAAA intron-variant
rs111579805 -- 16,483,162(+) TAAAC(A/G)TTAAT intron-variant
rs111582604 -- 16,491,492(+) ACACA(C/T)TCTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CROCCP3 Gene

Variant ID Type Subtype PubMed ID
dgv10e201 CNV deletion 23290073
dgv1e203 CNV gain+loss 21179565
dgv1n68 CNV loss 17160897
dgv39n100 CNV gain 25217958
dgv40n100 CNV gain 25217958
esv2677321 CNV deletion 23128226
esv2678817 CNV deletion 23128226
esv2750816 CNV gain 17911159
esv2758925 CNV gain+loss 17122850
esv3585339 CNV loss 21293372
esv3585340 CNV loss 21293372
nsv1161242 CNV duplication 26073780
nsv159668 CNV deletion 16902084
nsv428421 CNV gain+loss 18775914
nsv436814 CNV insertion 17901297
nsv9324 CNV gain+loss 18304495
nsv945793 CNV duplication 23825009

Relevant External Links for CROCCP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CROCCP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CROCCP3 Gene

Disorders for CROCCP3 Gene

Relevant External Links for CROCCP3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CROCCP3

No disorders were found for CROCCP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CROCCP3 Gene

Publications for CROCCP3 Gene

  1. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T. … Ohara O. (DNA Res. 2001) 2 3 4 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CROCCP3 Gene

Sources for CROCCP3 Gene

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