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Aliases for CROCCP2 Gene

Aliases for CROCCP2 Gene

  • Ciliary Rootlet Coiled-Coil, Rootletin Pseudogene 2 2 3
  • Ciliary Rootlet Coiled-Coil, Rootletin-Like 1 2 3
  • CROCCL1 3 4
  • Ciliary Rootlet Coiled-Coil Protein Pseudogene 2 4

External Ids for CROCCP2 Gene

Previous HGNC Symbols for CROCCP2 Gene

  • CROCCL1

Previous GeneCards Identifiers for CROCCP2 Gene

  • GC01M016945

Summaries for CROCCP2 Gene

GeneCards Summary for CROCCP2 Gene

CROCCP2 (Ciliary Rootlet Coiled-Coil, Rootletin Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CROCCP2 Gene

Genomics for CROCCP2 Gene

Genomic Location for CROCCP2 Gene

Start:
16,618,256 bp from pter
End:
16,644,683 bp from pter
Size:
26,428 bases
Orientation:
Minus strand

Genomic View for CROCCP2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CROCCP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CROCCP2 Gene

No data available for Regulatory Elements for CROCCP2 Gene

Proteins for CROCCP2 Gene

  • Protein details for CROCCP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86T23-CROL1_HUMAN
    Recommended name:
    Putative ciliary rootlet coiled-coil protein-like 1 protein
    Protein Accession:
    Q86T23
    Secondary Accessions:
    • Q8NF65
    • Q96FR5
    • Q9BRE8

    Protein attributes for CROCCP2 Gene

    Size:
    111 amino acids
    Molecular mass:
    12396 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC03395.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for CROCCP2 Gene

Proteomics data for CROCCP2 Gene at MOPED

Post-translational modifications for CROCCP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CROCCP2 Gene

Domains for CROCCP2 Gene

Protein Domains for CROCCP2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CROCCP2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86T23

UniProtKB/Swiss-Prot:

CROL1_HUMAN :
  • Q86T23
Family:
  • Belongs to the rootletin family.
genes like me logo Genes that share domains with CROCCP2: view

No data available for Gene Families for CROCCP2 Gene

Function for CROCCP2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CROCCP2 Gene

Localization for CROCCP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CROCCP2 Gene

Pathways for CROCCP2 Gene

SuperPathways for CROCCP2 Gene

No Data Available

Interacting Proteins for CROCCP2 Gene

Selected Interacting proteins: Q86T23-CROL1_HUMAN for CROCCP2 Gene via UniProtKB

Symbol External ID(s) Details
IFT20

Gene Ontology (GO) - Biological Process for CROCCP2 Gene

None

No data available for Pathways by source for CROCCP2 Gene

Transcripts for CROCCP2 Gene

mRNA/cDNA for CROCCP2 Gene

(13) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CROCCP2 Gene

Ciliary rootlet coiled-coil, rootletin pseudogene 2:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CROCCP2

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CROCCP2
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CROCCP2 Gene

No ASD Table

Relevant External Links for CROCCP2 Gene

GeneLoc Exon Structure for
CROCCP2
ECgene alternative splicing isoforms for
CROCCP2

Expression for CROCCP2 Gene

mRNA expression in normal human tissues for CROCCP2 Gene

SOURCE GeneReport for Unigene cluster for CROCCP2 Gene Hs.631865

genes like me logo Genes that share expressions with CROCCP2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CROCCP2 Gene

Orthologs for CROCCP2 Gene

Evolution for CROCCP2 Gene

ENSEMBL:
Gene Tree for CROCCP2 (if available)
TreeFam:
Gene Tree for CROCCP2 (if available)

No data available for Orthologs for CROCCP2 Gene

Paralogs for CROCCP2 Gene

Selected SIMAP similar genes for CROCCP2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CROCCP2: view

No data available for Paralogs for CROCCP2 Gene

Variants for CROCCP2 Gene

Sequence variations from dbSNP and Humsavar for CROCCP2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs3093 -- 16,618,314(-) CTGCT(C/G)TCCTC nc-transcript-variant
rs7803 -- 16,618,570(+) AGAAC(A/G)AATTT nc-transcript-variant
rs11378 -- 16,619,009(-) GGAGC(A/G)GCAGA nc-transcript-variant
rs13566 -- 16,618,914(+) ATAGC(A/T)CGGTG nc-transcript-variant
rs100805 -- 16,621,505(-) TCTGT(A/G)CCTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CROCCP2 Gene

Variant ID Type Subtype PubMed ID
dgv28e1 CNV Complex 17122850
dgv29e1 CNV Complex 17122850
nsv428421 CNV Gain+Loss 18775914
nsv9324 CNV Gain+Loss 18304495
nsv870673 CNV Gain 21882294
nsv436814 CNV Insertion 17901297
esv2750816 CNV Gain 17911159
dgv30e1 CNV Complex 17122850
dgv20e201 CNV Deletion 23290073
esv2678817 CNV Deletion 23128226
esv33046 CNV Loss 17666407
essv25036 CNV CNV 17122850
dgv20n67 CNV Gain 20364138
nsv821511 CNV Duplication 20802225
nsv829625 CNV Gain 20364138
esv29642 CNV Gain+Loss 19812545
dgv21e199 CNV Deletion 23128226
dgv31e1 CNV Complex 17122850
dgv32e1 CNV Complex 17122850
dgv33e1 CNV Complex 17122850
nsv499577 OTHER Inversion 21111241
nsv7173 OTHER Inversion 18451855
nsv834247 CNV Gain+Loss 17160897
esv34697 CNV Gain 17911159
nsv3743 CNV Loss 18451855
dgv34e1 CNV Complex 17122850
esv2597795 CNV Gain 19546169
dgv35e1 CNV Complex 17122850
dgv36e1 CNV Complex 17122850
nsv469795 CNV Complex 16826518
nsv471655 CNV Gain+Loss 15918152
nsv3854 CNV Insertion 18451855
esv29948 CNV Loss 18421352
dgv21n67 CNV Gain 20364138

Relevant External Links for CROCCP2 Gene

HapMap Linkage Disequilibrium report
CROCCP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CROCCP2 Gene

Disorders for CROCCP2 Gene

No disorders were found for CROCCP2 Gene.

No data available for UniProtKB/Swiss-Prot for CROCCP2 Gene

Publications for CROCCP2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for CROCCP2 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CROCCP2
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CROCCP2
    • Block miRNA regulation of CROCCP2 using miScript Target Protectors

    Sources for CROCCP2 Gene

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