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Aliases for CROCCP2 Gene

Aliases for CROCCP2 Gene

  • Ciliary Rootlet Coiled-Coil, Rootletin Pseudogene 2 2 3 5
  • Ciliary Rootlet Coiled-Coil, Rootletin-Like 1 2 3
  • CROCCL1 3 4
  • Ciliary Rootlet Coiled-Coil Protein Pseudogene 2 4

External Ids for CROCCP2 Gene

Previous HGNC Symbols for CROCCP2 Gene

  • CROCCL1

Previous GeneCards Identifiers for CROCCP2 Gene

  • GC01M016945
  • GC01M016625
  • GC01M016630
  • GC01M016639
  • GC01M016643

Summaries for CROCCP2 Gene

GeneCards Summary for CROCCP2 Gene

CROCCP2 (Ciliary Rootlet Coiled-Coil, Rootletin Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CROCCP2 Gene

Genomics for CROCCP2 Gene

Regulatory Elements for CROCCP2 Gene

Enhancers for CROCCP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F015791 1.8 FANTOM5 Ensembl ENCODE 4.9 +847.2 847181 11.3 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 CLCNKA HSPB7 FAM231A FBLIM1 CD24P1 RNU1-1 ENSG00000233078 FAM131C ARHGEF19-AS1 ENSG00000237301
GH01F017096 1.3 FANTOM5 Ensembl ENCODE 4.6 -453.9 -453923 3.4 ZNF263 SCRT1 PKNOX1 KLF1 CEBPB KLF17 ZMYM3 EBF1 TBX21 ZIC2 PADI2 PADI4 CROCCP2 SDHB
GH01F016925 1 Ensembl ENCODE 5.1 -281.6 -281576 2.4 CTCF ZIC2 ZKSCAN1 HIC1 ZNF664 ZFHX2 GLIS2 SCRT2 ZNF600 FOS SDHB ESPNP CROCCP2 ATP13A2 GC01M016886 PIR55831
GH01F016921 1.2 Ensembl ENCODE 4.2 -277.4 -277431 2.2 CBX3 KLF17 RAD21 ETS1 GLIS2 ZNF366 SCRT2 ZNF143 EGR2 ZNF263 SDHB LOC105376805 RCC2 MST1P2 CROCCP3 CROCCP2 GC01M016886 ENSG00000272426
GH01F016888 0.8 ENCODE 5.7 -244.7 -244725 1.7 CTCF SREBF2 ZNF76 CHD4 SIN3A ZIC2 YY1 HIC1 ZNF316 GLIS2 CROCC MFAP2 ENSG00000235241 LOC105376805 CROCCP2 CROCCP3 ESPNP GC01P016902
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CROCCP2 on UCSC Golden Path with GeneCards custom track

Promoters for CROCCP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000669075 183 1001 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for CROCCP2 Gene

Chromosome:
1
Start:
16,618,256 bp from pter
End:
16,644,683 bp from pter
Size:
26,428 bases
Orientation:
Minus strand

Genomic View for CROCCP2 Gene

Genes around CROCCP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CROCCP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CROCCP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CROCCP2 Gene

Proteins for CROCCP2 Gene

  • Protein details for CROCCP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86T23-CROL1_HUMAN
    Recommended name:
    Putative ciliary rootlet coiled-coil protein-like 1 protein
    Protein Accession:
    Q86T23
    Secondary Accessions:
    • Q8NF65
    • Q96FR5
    • Q9BRE8

    Protein attributes for CROCCP2 Gene

    Size:
    111 amino acids
    Molecular mass:
    12396 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC03395.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for CROCCP2 Gene

Post-translational modifications for CROCCP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CROCCP2 Gene

Domains & Families for CROCCP2 Gene

Protein Domains for CROCCP2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CROCCP2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86T23

UniProtKB/Swiss-Prot:

CROL1_HUMAN :
  • Belongs to the rootletin family.
Family:
  • Belongs to the rootletin family.
genes like me logo Genes that share domains with CROCCP2: view

No data available for Gene Families for CROCCP2 Gene

Function for CROCCP2 Gene

Phenotypes for CROCCP2 Gene

GenomeRNAi human phenotypes for CROCCP2:
genes like me logo Genes that share phenotypes with CROCCP2: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CROCCP2 Gene

Localization for CROCCP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CROCCP2 Gene

Pathways & Interactions for CROCCP2 Gene

SuperPathways for CROCCP2 Gene

No Data Available

Interacting Proteins for CROCCP2 Gene

Selected Interacting proteins: Q86T23-CROL1_HUMAN for CROCCP2 Gene via UniProtKB IID

Symbol External ID(s) Details
IFT20

Gene Ontology (GO) - Biological Process for CROCCP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CROCCP2 Gene

Transcripts for CROCCP2 Gene

mRNA/cDNA for CROCCP2 Gene

(13) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CROCCP2 Gene

Ciliary rootlet coiled-coil, rootletin pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CROCCP2 Gene

No ASD Table

Relevant External Links for CROCCP2 Gene

GeneLoc Exon Structure for
CROCCP2
ECgene alternative splicing isoforms for
CROCCP2

Expression for CROCCP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CROCCP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of CROCCP2 Gene:

CROCCP2

SOURCE GeneReport for Unigene cluster for CROCCP2 Gene:

Hs.631865
genes like me logo Genes that share expression patterns with CROCCP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CROCCP2 Gene

Orthologs for CROCCP2 Gene

Evolution for CROCCP2 Gene

ENSEMBL:
Gene Tree for CROCCP2 (if available)
TreeFam:
Gene Tree for CROCCP2 (if available)

No data available for Orthologs for CROCCP2 Gene

Paralogs for CROCCP2 Gene

(3) SIMAP similar genes for CROCCP2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CROCCP2: view

No data available for Paralogs for CROCCP2 Gene

Variants for CROCCP2 Gene

Sequence variations from dbSNP and Humsavar for CROCCP2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs100805 -- 16,621,505(-) TCTGT(A/G)CCTTC intron-variant
rs10081952 -- 16,630,821(+) ACCCC(C/G)ACCTG intron-variant
rs10157498 -- 16,628,486(+) CCCGG(A/C)GAACC nc-transcript-variant
rs10157908 -- 16,628,794(+) TGCCC(A/G)TAGCA intron-variant
rs10157917 -- 16,628,943(+) CACAC(A/G)GGCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CROCCP2 Gene

Variant ID Type Subtype PubMed ID
dgv10e201 CNV deletion 23290073
dgv1e203 CNV gain+loss 21179565
dgv20n67 CNV gain 20364138
dgv21e199 CNV deletion 23128226
dgv21n67 CNV gain 20364138
dgv39n100 CNV gain 25217958
dgv40n100 CNV gain 25217958
dgv41n100 CNV gain 25217958
dgv42n100 CNV loss 25217958
dgv43n100 CNV loss 25217958
dgv44n100 CNV gain+loss 25217958
dgv45n100 CNV gain 25217958
dgv46n100 CNV gain 25217958
dgv47n100 CNV gain+loss 25217958
dgv48n100 CNV gain+loss 25217958
dgv49e59 CNV duplication 20981092
dgv49n100 CNV loss 25217958
dgv49n106 CNV duplication 24896259
dgv50n100 CNV gain 25217958
dgv51n100 CNV loss 25217958
dgv52n100 CNV gain+loss 25217958
dgv53n100 CNV loss 25217958
dgv54n100 CNV gain 25217958
dgv55n100 CNV gain+loss 25217958
dgv56n100 CNV loss 25217958
dgv57n100 CNV loss 25217958
dgv58n100 CNV gain+loss 25217958
dgv59n100 CNV gain 25217958
dgv60n100 CNV loss 25217958
dgv61n100 CNV gain+loss 25217958
dgv62n100 CNV gain 25217958
dgv63n100 CNV gain 25217958
dgv64n100 CNV loss 25217958
dgv65n100 CNV gain 25217958
dgv66n100 CNV gain 25217958
dgv67n100 CNV gain+loss 25217958
dgv68n100 CNV gain 25217958
dgv69n100 CNV loss 25217958
dgv70n100 CNV gain+loss 25217958
dgv71n100 CNV loss 25217958
dgv72n100 CNV gain+loss 25217958
esv2597795 CNV gain 19546169
esv2678817 CNV deletion 23128226
esv2750816 CNV gain 17911159
esv2758925 CNV gain+loss 17122850
esv29642 CNV gain+loss 19812545
esv29948 CNV loss 18421352
esv33046 CNV loss 17666407
esv3444386 CNV duplication 20981092
esv34697 CNV gain 17911159
esv3577752 CNV loss 25503493
nsv1001952 CNV gain+loss 25217958
nsv1003019 CNV loss 25217958
nsv1003602 CNV loss 25217958
nsv1004807 CNV gain+loss 25217958
nsv1006849 CNV gain+loss 25217958
nsv1008129 CNV gain+loss 25217958
nsv1077283 CNV duplication 25765185
nsv1116446 OTHER inversion 24896259
nsv1152149 CNV duplication 26484159
nsv1161242 CNV duplication 26073780
nsv3743 CNV deletion 18451855
nsv3854 CNV insertion 18451855
nsv428421 CNV gain+loss 18775914
nsv436814 CNV insertion 17901297
nsv469795 CNV gain+loss 16826518
nsv471655 CNV gain+loss 15918152
nsv499577 OTHER inversion 21111241
nsv545643 CNV loss 21841781
nsv7173 OTHER inversion 18451855
nsv821511 CNV duplication 20802225
nsv829625 CNV gain 20364138
nsv834247 CNV gain+loss 17160897
nsv9324 CNV gain+loss 18304495
nsv945793 CNV duplication 23825009
nsv954848 CNV duplication 24416366
nsv998073 CNV gain+loss 25217958
nsv999755 CNV gain 25217958

Relevant External Links for CROCCP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CROCCP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CROCCP2 Gene

Disorders for CROCCP2 Gene

Relevant External Links for CROCCP2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CROCCP2

No disorders were found for CROCCP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CROCCP2 Gene

Publications for CROCCP2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  5. Lineage-specific gene duplication and loss in human and great ape evolution. (PMID: 15252450) Fortna A. … Sikela J.M. (PLoS Biol. 2004) 3 64

Products for CROCCP2 Gene

Sources for CROCCP2 Gene

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