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Aliases for CRNDE Gene

Subcategory (RNA class) for CRNDE Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CRNDE Gene

  • Colorectal Neoplasia Differentially Expressed (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 180 2 3
  • NCRNA00180 3
  • LINC00180 3

External Ids for CRNDE Gene

Previous GeneCards Identifiers for CRNDE Gene

  • GC16M053512
  • GC16M040838

Summaries for CRNDE Gene

GeneCards Summary for CRNDE Gene

CRNDE (Colorectal Neoplasia Differentially Expressed (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRNDE Gene

Genomics for CRNDE Gene

Genomic Location for CRNDE Gene

Start:
54,918,863 bp from pter
End:
54,929,189 bp from pter
Size:
10,327 bases
Orientation:
Minus strand

Genomic View for CRNDE Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CRNDE Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRNDE Gene

No data available for Regulatory Elements for CRNDE Gene

Proteins for CRNDE Gene

Post-translational modifications for CRNDE Gene

No Post-translational modifications

No data available for DME Specific Peptides for CRNDE Gene

Domains for CRNDE Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CRNDE Gene

Function for CRNDE Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CRNDE Gene

Localization for CRNDE Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CRNDE Gene

Pathways for CRNDE Gene

SuperPathways for CRNDE Gene

No Data Available

Interacting Proteins for CRNDE Gene

Gene Ontology (GO) - Biological Process for CRNDE Gene

None

No data available for Pathways by source for CRNDE Gene

Transcripts for CRNDE Gene

mRNA/cDNA for CRNDE Gene

(5) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CRNDE Gene

Colorectal neoplasia differentially expressed (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CRNDE

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CRNDE Gene

No ASD Table

Relevant External Links for CRNDE Gene

GeneLoc Exon Structure for
CRNDE
ECgene alternative splicing isoforms for
CRNDE

Expression for CRNDE Gene

mRNA expression in normal human tissues for CRNDE Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CRNDE Gene

This gene is overexpressed in Testis (10.7).

SOURCE GeneReport for Unigene cluster for CRNDE Gene Hs.237396

genes like me logo Genes that share expressions with CRNDE: view

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for CRNDE Gene

Orthologs for CRNDE Gene

Evolution for CRNDE Gene

ENSEMBL:
Gene Tree for CRNDE (if available)
TreeFam:
Gene Tree for CRNDE (if available)

No data available for Orthologs for CRNDE Gene

Paralogs for CRNDE Gene

No data available for Paralogs for CRNDE Gene

Variants for CRNDE Gene

Sequence variations from dbSNP and Humsavar for CRNDE Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs5006075 -- 54,918,400(+) CCTTT(C/G)TGGAC downstream-variant-500B
rs7198163 -- 54,922,522(+) TTATT(A/G)ATATT intron-variant
rs8064124 -- 54,927,386(+) CCTTT(C/G)CTGGT intron-variant
rs11643696 -- 54,926,407(+) ACATA(C/T)ACACT intron-variant
rs12444648 -- 54,928,264(+) CATAC(A/T)TTCTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CRNDE Gene

Variant ID Type Subtype PubMed ID
nsv827657 CNV Gain 20364138

Relevant External Links for CRNDE Gene

HapMap Linkage Disequilibrium report
CRNDE

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CRNDE Gene

Disorders for CRNDE Gene

No disorders were found for CRNDE Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CRNDE Gene

Publications for CRNDE Gene

  1. CRNDE: A Long Non-Coding RNA Involved in CanceR, Neurobiology, and DEvelopment. (PMID: 23226159) Ellis B.C. … Graham L.D. (Front Genet 2012) 2 3
  2. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M. … Rinn J.L. (Elife 2013) 2 3
  3. SF3B1 mutations are associated with alternative splicing in uveal melanoma. (PMID: 23861464) Furney S.J. … Marais R. (Cancer Discov 2013) 3
  4. CRNDE, a long non-coding RNA responsive to insulin/IGF signaling, regulates genes involved in central metabolism. (PMID: 24184209) Ellis B.C. … Molloy P.L. (Biochim. Biophys. Acta 2014) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for CRNDE Gene

Sources for CRNDE Gene

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