 |
 | Services
| |
 |
Aliases & Descriptions for CRKL
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| v-crk avian sarcoma virus CT10 oncogene homolog-like 1, 2 | | v-crk sarcoma virus CT10 oncogene homolog (avian)-like 2 |
|
| | Search outside databases for aliases for CRKL genePrevious GC identifer: GC22P017970 |
Summaries for CRKL(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CRKL: This gene encodes a protein kinase containing SH2 and SH3 (src homology) domains which has been shown to activate the RAS and JUN kinase signaling pathways and transform fibroblasts in a RAS-dependent fashion. It is a substrate of the BCR-ABL tyrosine kinase, plays a role in fibroblast transformation by BCR-ABL, and may be oncogenic. UniProtKB/Swiss-Prot: CRKL_HUMAN, P46109Function: May mediate the transduction of intracellular signalsGene Wiki entry for CRKL |
Genomic Location for CRKL
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CRKL gene 
Entrez Gene cytogenetic band: 22q11|22q11.21 Ensembl cytogenetic band: 22q11.21 HGNC cytogenetic band: 22q11.21CRKL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure GeneLoc location for GC22P019596:
(about GC identifiers)
Start:
|
19,601,714 bp from pter |
End:
|
19,637,890 bp from pter |
Size:
|
36,177 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000022.9 NT_011520.11
| Proteins for CRKL
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CRKL_HUMAN, P46109 (See
protein sequence)Recommended Name: Crk-like protein Size: 303 amino acids; 33777 Da
Subunit: Interacts with INPP5D/SHIP1. Interacts with DOCK2 and EPOR. Interacts with phosphorylated CBLB and IRS4
PDB structures from and Proteopedia :2BZX (3D)
 2BZY (3D)
 2DBK (3D)
 2EO3 (3D)
 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005198.1
ENSEMBL proteins: ENSP00000346300
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CRKL: Assays for CRKL: | Protein
Domains/ Families for CRKL(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P46109
ProtoNet protein and cluster: P46109 3 Blocks protein families: IPB000980 SH2 domain signature IPB001452 SH3 domain signature IPB011511 Variant SH3
UniProtKB/Swiss-Prot: CRKL_HUMAN, P46109Similarity: Contains 1 SH2 domainSimilarity: Contains 2 SH3 domains | Gene Function for CRKL
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005207
Applied Biosystems Silencer® siRNAs for CRKL
Sigma-Aldrich siRNA and siRNA Panels for CRKL  Sigma-Aldrich shRNA for CRKL  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005207                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005207                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005207 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005207
UniProtKB/Swiss-Prot: CRKL_HUMAN, P46109Function: May mediate the transduction of intracellular signalsGenatlas biochemistry entry for CRKL:avian sarcoma virus CT10 (v-crk) related15/18 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Crkl) (see all 18
):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for CRKL
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/15 Sigma-Aldrich "Your Favorite Gene" Pathways for CRKL (Your Favorite Gene powered by Ingenuity) (see all 15
) 
Gene Network CentralTM Interacting Genes and Proteins Network for CRKL 
5/112 Interacting proteins for CRKL (ENSP000003463003 P461091, 2) via UniProtKB, MINT, and/or STRING (see all 112
)About this table
5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
): About this table
|
Drugs & Compounds for CRKL(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CRKL 8 Novoseek chemical compound relationships for CRKL gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tyrosine |
75.47 |
128 |
11443118 (6), 9845531 (4), 9886328 (4), 10204582 (4) (see all 57) |
| ifn-alpha |
53.16 |
8 |
11167825 (4), 9872990 (1), 10428508 (1) |
| phosphatidylinositol |
45.92 |
8 |
10531310 (1), 9092574 (1), 12589802 (1), 15556646 (1) (see all 7) |
| phosphotyrosine |
19.32 |
3 |
9710592 (2), 10608804 (1) |
| threonine |
8.64 |
2 |
9891069 (1), 10648385 (1) |
| proline |
1.58 |
7 |
8978305 (3) |
| gtp |
0.73 |
1 |
9268367 (1) |
| lipid |
0.00 |
1 |
18314490 (1) |
About this table
|
Transcripts for CRKL(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005207
Sigma-Aldrich siRNA and siRNA Panels for CRKL  Sigma-Aldrich shRNA for CRKL  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005207 REFSEQ mRNAs for CRKL gene: NM_005207.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005207               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005207                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005207                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005207  Additional cDNA sequence: AK000311.1 AK292909.1 AL049941.1 BC026248.1 BC033281.1 BC043500.1 BC044621.1 BC053958.1 CR456423.1 CR593236.1 CR625781.1 X59656.1 12 DOTS entries: DT.100772973 DT.100724319 DT.92437776 DT.100020162 DT.95072289 DT.120668210 DT.318716 DT.120668414 DT.97803983 DT.120668411 DT.95233274 DT.92437779 24/362 AceView cDNA sequences (see all 362
):CR593236 AU100217 BX102236 CR625781 BM846172 BM473439 BU584826 N98279 BM695802 AA653436 AA854068 R11168 H88518 BQ720842 Z44120 BM561169 BC026248 AA991376 BX430572 AA481047 CF136322 BG681314 BX115757 CR456423
highest scoring ESTs for CRKL:X59656 AA026051 AA031370 AA031371 AA043919 AA129594 AA129595 AA188510 AA317351 AA318007 Unigene Cluster for CRKL: V-crk sarcoma virus CT10 oncogene homolog (avian)-like Hs.592205 [show with all ESTs]Unigene Representative Sequence: NM_005207
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000354336
|
Expression for CRKL
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CRKL expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CRKL
1 / 2 / 3 7 probe-sets matching CRKL gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCCTGTTTGT
SOURCE GeneReport for Unigene cluster: Hs.592205
Expression variation in blood from EXPOLDB for CRKL |
Orthologs for CRKL
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CRKL gene from 5/10 species (see all 10
)
About this table Species with no ortholog for CRKL
ENSEMBL Gene Tree for CRKL | Paralogs for CRKL(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CRKL gene
- CRK2
|
SNPs/Variants for CRKL(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CRKL (up to first 250kb)
|
Disorders & Mutations for CRKL
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602007
7 Novoseek disease relationships for CRKL gene
About this table
|
Medical News for CRKL(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for CRKL (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/157 PubMed articles for CRKL gene (see all 157
):- Isolation and chromosomal localization of CRKL, a human crk-like gene. (PubMed id 8361759)1, 2, 3, 4 ten Hoeve J.... Groffen J. (1993)
- CrkL is recruited through its SH2 domain to the erythropoietin receptor and plays a role in Lyn-mediated receptor signaling. (PubMed id 11443118)1, 3, 4 Arai A.... Miura O. (2001)
- Interplay of the proto-oncogene proteins CrkL and CrkII in insulin-like growth factor-I receptor-mediated signal transduction. (PubMed id 9614078)1, 3, 4 Koval A.P....LeRoith D. (1998)
- The CRKL adaptor protein transforms fibroblasts and functions in transformation by the BCR-ABL oncogene. (PubMed id 8798523)1, 2, 3 Senechal K....Sawyers C.L. (1996)
- DOCK2 associates with CrkL and regulates Rac1 in human leukemia cell lines. (PubMed id 12393632)1, 3, 4 Nishihara H....Tanaka S. (2002)
- Tyrosine phosphorylation and complex formation of Cbl-b upon T cell receptor stimulation. (PubMed id 10022120)1, 3, 4 Elly C....Liu Y.-C. (1999)
- Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455)3, 4 Rush J.... Comb M.J. (2005)
- A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802)3, 4 Collins J.E.... Dunham I. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Thrombopoietin induces association of Crkl with STAT5 but not STAT3 in human platelets. (PubMed id 9845531)1, 3 Ozaki K....Ikeda Y. (1998)
|
Search for CRKL
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CRKL
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CRKL
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CRKL(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CRKL(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CRKL:

 | |
 | | | | |
|
 |  |  |
| Antibodies & Assays for CRKL  |
| | Recombinant Proteins (CrkL) | | Antibodies (CrkL) |
| | | Search Tocris compounds for CRKL |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|