Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CRISPLD2 Gene

Aliases for CRISPLD2 Gene

  • Cysteine Rich Secretory Protein LCCL Domain Containing 2 2 3 5
  • LCCL Domain-Containing Cysteine-Rich Secretory Protein 2 3 4
  • Cysteine-Rich Secretory Protein 11 3 4
  • Late Gestation Lung 1 2 3
  • CRISP-11 3 4
  • LCRISP2 3 4
  • CRISP11 3 4
  • LCCL Domain Containing Cysteine-Rich Secretory Protein 2 2
  • Cysteine-Rich Secretory Protein LCCL Domain-Containing 2 3
  • Testis Secretory Sperm-Binding Protein Li 207a 3
  • Trypsin Inhibitor 3
  • LGL1 3

External Ids for CRISPLD2 Gene

Previous HGNC Symbols for CRISPLD2 Gene

  • LCRISP2

Previous GeneCards Identifiers for CRISPLD2 Gene

  • GC16P083412
  • GC16P070606

Summaries for CRISPLD2 Gene

GeneCards Summary for CRISPLD2 Gene

CRISPLD2 (Cysteine Rich Secretory Protein LCCL Domain Containing 2) is a Protein Coding gene. Among its related pathways are Innate Immune System. GO annotations related to this gene include heparin binding and glycosaminoglycan binding. An important paralog of this gene is CRISPLD1.

UniProtKB/Swiss-Prot for CRISPLD2 Gene

  • Promotes matrix assembly.

Gene Wiki entry for CRISPLD2 Gene

Additional gene information for CRISPLD2 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRISPLD2 Gene

Genomics for CRISPLD2 Gene

Regulatory Elements for CRISPLD2 Gene

Enhancers for CRISPLD2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H085518 2 FANTOM5 Ensembl ENCODE dbSUPER 20.4 +702.7 702683 8 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A YBX1 FEZF1 ENSG00000270184 RNU1-103P KLHL36 RN7SL381P ZDHHC7 CRISPLD2 GSE1 TLDC1 ENSG00000269898 ENSG00000261177
GH16H084734 1.5 Ensembl ENCODE dbSUPER 22.7 -83.0 -82965 4 HNRNPUL1 HDGF FOXA2 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF2 ZNF143 KLHL36 ZDHHC7 CRISPLD2 USP10 ENSG00000261243 COTL1 TAF1C ENSG00000260859 LOC105371378
GH16H084825 1.8 FANTOM5 Ensembl ENCODE dbSUPER 18.2 +13.3 13255 15 PKNOX1 ATF1 BMI1 RAD21 ZNF121 EGR1 SCRT2 RCOR1 FOS ATF7 CRISPLD2 GSE1 ZDHHC7 ENSG00000260859 ATP2C2-AS1 LOC123862
GH16H084927 1.4 Ensembl ENCODE dbSUPER 22.8 +109.4 109438 3 HNRNPUL1 NFIB KLF17 EGR1 EGR2 SMARCA5 ZBTB2 REST NR2F2 NFIC ZDHHC7 CRISPLD2 ENSG00000261243 KLHL36 ENSG00000270184 TAF1C ENSG00000260859 RNU1-103P USP10 LINC02176
GH16H084879 1 ENCODE 26.3 +60.1 60073 1 HDGF PKNOX1 ATF1 YY1 TCF12 ZNF766 GATA2 ELK1 FOS ATF7 CRISPLD2 ENSG00000260859 KIAA0513 LOC123862
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CRISPLD2 on UCSC Golden Path with GeneCards custom track

Promoters for CRISPLD2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000088856 -81 601 TBP NFIB RAD21 GLIS2 SCRT2 ZNF391 EGR2 ZNF174 SP5 NFYC

Genomic Location for CRISPLD2 Gene

Chromosome:
16
Start:
84,819,981 bp from pter
End:
84,920,768 bp from pter
Size:
100,788 bases
Orientation:
Plus strand

Genomic View for CRISPLD2 Gene

Genes around CRISPLD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CRISPLD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CRISPLD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRISPLD2 Gene

Proteins for CRISPLD2 Gene

  • Protein details for CRISPLD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0B8-CRLD2_HUMAN
    Recommended name:
    Cysteine-rich secretory protein LCCL domain-containing 2
    Protein Accession:
    Q9H0B8
    Secondary Accessions:
    • D3DUM0
    • Q6P590
    • Q6UWH0
    • Q6UXC6
    • Q96IB1
    • Q96K61

    Protein attributes for CRISPLD2 Gene

    Size:
    497 amino acids
    Molecular mass:
    55920 Da
    Quaternary structure:
    • Binds to heparin, dermatan sulfate and chondroitin sulfate.

    Alternative splice isoforms for CRISPLD2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CRISPLD2 Gene

Post-translational modifications for CRISPLD2 Gene

  • Glycosylation at isoforms=2, 3, 4, 527
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for CRISPLD2 Gene

Domains & Families for CRISPLD2 Gene

Gene Families for CRISPLD2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted secreted proteins

Protein Domains for CRISPLD2 Gene

Suggested Antigen Peptide Sequences for CRISPLD2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9H0B8

UniProtKB/Swiss-Prot:

CRLD2_HUMAN :
  • Belongs to the CRISP family.
Family:
  • Belongs to the CRISP family.
genes like me logo Genes that share domains with CRISPLD2: view

Function for CRISPLD2 Gene

Molecular function for CRISPLD2 Gene

UniProtKB/Swiss-Prot Function:
Promotes matrix assembly.

Phenotypes From GWAS Catalog for CRISPLD2 Gene

Gene Ontology (GO) - Molecular Function for CRISPLD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008201 heparin binding IEA --
genes like me logo Genes that share ontologies with CRISPLD2: view
genes like me logo Genes that share phenotypes with CRISPLD2: view

Animal Models for CRISPLD2 Gene

MGI Knock Outs for CRISPLD2:

Animal Model Products

  • Taconic Biosciences Mouse Models for CRISPLD2

CRISPR Products

miRNA for CRISPLD2 Gene

miRTarBase miRNAs that target CRISPLD2

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CRISPLD2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CRISPLD2 Gene

Localization for CRISPLD2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CRISPLD2 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CRISPLD2 gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleoplasm (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CRISPLD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA,TAS --
GO:0005578 proteinaceous extracellular matrix IEA --
GO:0030133 transport vesicle IDA --
GO:0034774 secretory granule lumen TAS --
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with CRISPLD2: view

Pathways & Interactions for CRISPLD2 Gene

genes like me logo Genes that share pathways with CRISPLD2: view

Pathways by source for CRISPLD2 Gene

3 Reactome pathways for CRISPLD2 Gene

Gene Ontology (GO) - Biological Process for CRISPLD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030198 extracellular matrix organization IEA --
GO:0030324 lung development IEA --
GO:0043312 neutrophil degranulation TAS --
GO:0060325 face morphogenesis IMP 21254358
genes like me logo Genes that share ontologies with CRISPLD2: view

No data available for SIGNOR curated interactions for CRISPLD2 Gene

Drugs & Compounds for CRISPLD2 Gene

No Compound Related Data Available

Transcripts for CRISPLD2 Gene

Unigene Clusters for CRISPLD2 Gene

Cysteine-rich secretory protein LCCL domain containing 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CRISPLD2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CRISPLD2 Gene

No ASD Table

Relevant External Links for CRISPLD2 Gene

GeneLoc Exon Structure for
CRISPLD2
ECgene alternative splicing isoforms for
CRISPLD2

Expression for CRISPLD2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CRISPLD2 Gene

Protein differential expression in normal tissues from HIPED for CRISPLD2 Gene

This gene is overexpressed in Lavage (57.7) and Placenta (7.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CRISPLD2 Gene



NURSA nuclear receptor signaling pathways regulating expression of CRISPLD2 Gene:

CRISPLD2

SOURCE GeneReport for Unigene cluster for CRISPLD2 Gene:

Hs.513779

Evidence on tissue expression from TISSUES for CRISPLD2 Gene

  • Blood(4.3)
  • Lung(2)
genes like me logo Genes that share expression patterns with CRISPLD2: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CRISPLD2 Gene

Orthologs for CRISPLD2 Gene

This gene was present in the common ancestor of animals.

Orthologs for CRISPLD2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CRISPLD2 33 34
  • 99.26 (n)
dog
(Canis familiaris)
Mammalia CRISPLD2 33 34
  • 86.46 (n)
cow
(Bos Taurus)
Mammalia CRISPLD2 33 34
  • 84.41 (n)
oppossum
(Monodelphis domestica)
Mammalia CRISPLD2 34
  • 80 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Crispld2 33
  • 79.48 (n)
mouse
(Mus musculus)
Mammalia Crispld2 33 16 34
  • 79.08 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CRISPLD2 34
  • 76 (a)
OneToOne
chicken
(Gallus gallus)
Aves CRISPLD2 33 34
  • 72.7 (n)
lizard
(Anolis carolinensis)
Reptilia CRISPLD2 34
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia crispld2 33
  • 67.95 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100535149 33
  • 66.25 (n)
CRISPLD2 34
  • 60 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG8483 34
  • 27 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea scl-23 34
  • 19 (a)
ManyToMany
vap-1 34
  • 18 (a)
ManyToMany
scl-22 34
  • 17 (a)
ManyToMany
Species where no ortholog for CRISPLD2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CRISPLD2 Gene

ENSEMBL:
Gene Tree for CRISPLD2 (if available)
TreeFam:
Gene Tree for CRISPLD2 (if available)

Paralogs for CRISPLD2 Gene

Paralogs for CRISPLD2 Gene

(4) SIMAP similar genes for CRISPLD2 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with CRISPLD2: view

Variants for CRISPLD2 Gene

Sequence variations from dbSNP and Humsavar for CRISPLD2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000014450 -- 84,885,181(+) CAAGT(A/G)TGAGA intron-variant
rs1000023179 -- 84,894,926(+) GAAAT(A/C)CTGAG intron-variant
rs1000040452 -- 84,835,264(+) TTTGT(A/G)TTTTT intron-variant
rs1000043981 -- 84,865,992(+) TGGAC(A/C)GTAAA intron-variant
rs1000070121 -- 84,892,670(+) TGATA(-/T)TATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CRISPLD2 Gene

Variant ID Type Subtype PubMed ID
dgv5269n54 CNV loss 21841781
esv3639442 CNV gain 21293372
esv3639445 CNV gain 21293372
esv3639446 CNV gain 21293372
esv3639447 CNV gain 21293372
esv3639448 CNV gain 21293372
nsv1056758 CNV gain 25217958
nsv1066260 CNV gain 25217958
nsv1113825 CNV deletion 24896259
nsv1131282 CNV deletion 24896259
nsv457606 CNV gain 19166990
nsv457608 CNV loss 19166990
nsv457610 CNV loss 19166990
nsv483044 CNV gain 15286789
nsv573466 CNV gain 21841781
nsv573470 CNV loss 21841781
nsv573471 CNV loss 21841781
nsv573472 CNV loss 21841781

Variation tolerance for CRISPLD2 Gene

Residual Variation Intolerance Score: 91.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.58; 94.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CRISPLD2 Gene

Human Gene Mutation Database (HGMD)
CRISPLD2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CRISPLD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CRISPLD2 Gene

Disorders for CRISPLD2 Gene

Relevant External Links for CRISPLD2

Genetic Association Database (GAD)
CRISPLD2
Human Genome Epidemiology (HuGE) Navigator
CRISPLD2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CRISPLD2

No disorders were found for CRISPLD2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CRISPLD2 Gene

Publications for CRISPLD2 Gene

  1. CRISPLD2: a novel NSCLP candidate gene. (PMID: 17616516) Chiquet BT … Hecht JT (Human molecular genetics 2007) 3 22 45 60
  2. Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S … Poustka A (Genome research 2001) 2 3 4 60
  3. CRISPLD2 (LGL1) inhibits proinflammatory mediators in human fetal, adult, and COPD lung fibroblasts and epithelial cells. (PMID: 27597766) Zhang H … Kaplan F (Physiological reports 2016) 2 3 60
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 45 60
  5. CRISPLD2 polymorphisms are associated with non-syndromic cleft lip with or without cleft palate in a northern Chinese population. (PMID: 20662919) Shi J … Cao F (European journal of oral sciences 2010) 3 45 60

Products for CRISPLD2 Gene

Sources for CRISPLD2 Gene

Content
Loading form....