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CRIPAK Gene

protein-coding   GIFtS: 41
GCID: GC04P001385

Cysteine-Rich PAK1 Inhibitor

(Previous name: cysteine-rich PAK1inhibitor)
Pneumococci & Pneumococcal Diseases Congress
  See related diseases
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Cysteine-Rich PAK1 Inhibitor1 2
Cysteine-Rich PAK1inhibitor1
Cysteine-Rich Inhibitor Of PAK12
CRIPak3
FLJ34435

External Ids:    HGNC: 266191   Entrez Gene: 2854642   Ensembl: ENSG000001799797   OMIM: 6102035   UniProtKB: Q8N1N53   

Export aliases for CRIPAK gene to outside databases

Previous GC identifer: GC04P001378


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for CRIPAK Gene:
CRIPAK is a negative regulator of PAK1 (MIM 602590) that is upregulated by estrogen (Talukder et al., 2006 (PubMed
16278681)).(supplied by OMIM, Mar 2008)

GeneCards Summary for CRIPAK Gene:
CRIPAK (cysteine-rich PAK1 inhibitor) is a protein-coding gene. Diseases associated with CRIPAK include hiv-1, and breast cancer.

UniProtKB/Swiss-Prot: CRPAK_HUMAN, Q8N1N5
Function: Negative regulator of PAK1. It has been suggested that the lost of CRIPAK in breast tumors might
contribute to hormonal independence




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000004.12  NC_018915.2  NT_006051.19  
Regulatory elements:
   Regulatory transcription factor binding sites in the CRIPAK gene promoter:
         C/EBPbeta   Pax-6   Brachyury   GATA-1   YY1   E2F-1   E2F   HOXA5   FOXO4   Chx10   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCRIPAK promoter sequence
   Search Chromatin IP Primers for CRIPAK

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CRIPAK


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p16.3   Ensembl cytogenetic band:  4p16.3   HGNC cytogenetic band: 4p16.3

CRIPAK Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CRIPAK gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P001385:  view genomic region     (about GC identifiers)

Start:
1,385,340 bp from pter      End:
1,389,782 bp from pter
Size:
4,443 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: CRPAK_HUMAN, Q8N1N5 (See protein sequence)
Recommended Name: Cysteine-rich PAK1 inhibitor  
Size: 446 amino acids; 48076 Da
Subunit: Interacts with PAK1
Secondary accessions: Q8NB03

Explore the universe of human proteins at neXtProt for CRIPAK: NX_Q8N1N5

Explore proteomics data for CRIPAK at MOPED


See CRIPAK Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_787114.2  
ENSEMBL proteins: 
 ENSP00000323978  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR003616 Post-SET_dom

Graphical View of Domain Structure for InterPro Entry Q8N1N5

ProtoNet protein and cluster: Q8N1N5


CRIPAK for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: CRPAK_HUMAN, Q8N1N5
Function: Negative regulator of PAK1. It has been suggested that the lost of CRIPAK in breast tumors might
contribute to hormonal independence
Induction: Up-regulated by estrogen

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding IPI16278681
     
CRIPAK for ontologies           About GeneDecksing


Phenotypes:
     2 GenomeRNAi human phenotypes for CRIPAK:
 Decreased TP53 protein express  Decreased p24 protein expressi 

Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
CRPAK_HUMAN, Q8N1N5: Cytoplasm. Membrane. Nucleus. Note=Translocated to the nuclear compartment upon hormonal
treatment by estrogen
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus5
endoplasmic reticulum4
plasma membrane4
extracellular2

Gene Ontology (GO): 4 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IDA16278681
GO:0005737cytoplasm IDA16278681
GO:0005783endoplasmic reticulum IDA16278681
GO:0005886plasma membrane IDA16278681

CRIPAK for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CRIPAK
Interactions:

    Search GeneGlobe Interaction Network for CRIPAK

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

2 Interacting proteins for CRIPAK (Q8N1N51, 3 ENSP000003239784) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
PAK1Q131531, 3, ENSP000002785684EBI-1205846,EBI-1307 I2D: score=2 STRING: ENSP00000278568
ESR1P033723, ENSP000002062494I2D: score=1 STRING: ENSP00000206249
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Gene Ontology (GO): 4 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006469negative regulation of protein kinase activity IDA16278681
GO:0033147negative regulation of intracellular estrogen receptor signaling pathway IDA16278681
GO:0043627response to estrogen IDA16278681
GO:0051493regulation of cytoskeleton organization IDA16278681

CRIPAK for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for CRIPAK gene: 
NM_175918.3  

Unigene Cluster for CRIPAK:

Cysteine-rich PAK1 inhibitor
Hs.26410  [show with all ESTs]
Unigene Representative Sequence: NM_175918
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000324803(uc003gdf.2)

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Additional mRNA sequence: 

AK091762.1 AK096209.1 AK126919.1 

3 DOTS entries:

DT.100021373  DT.209617  DT.99958367 

Selected AceView cDNA sequences (see all 46):

AL045049 AX747170 Z39442 AL043834 AW088580 CA420525 BG231499 AK096209 
BM982683 BU623980 AK091762 NM_175918 N62916 BX116238 CK000202 BE018394 
AK126919 AI571136 CA425154 R55327 CD558065 AA479350 AW166990 AI274611 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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CRIPAK expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GATGCTGATT
CRIPAK Expression
About this image

CRIPAK Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

CRIPAK Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.26410

UniProtKB/Swiss-Prot: CRPAK_HUMAN, Q8N1N5
Tissue specificity: Widely expressed with a highest expression observed in trachea, prostate and adrenal glands.
Expressed in many cancer cell lines including breast cancer cells

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CRIPAK

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and chimp.

Orthologs for CRIPAK gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chimpanzee
(Pan troglodytes)
Mammalia CRIPAK1 cysteine-rich PAK1 inhibitor 92.72(n)
89.68(a)
  100613776  XM_003954417.1  XP_003954466.1 


ENSEMBL Gene Tree for CRIPAK (if available)
TreeFam Gene Tree for CRIPAK (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for CRIPAK (see all 361)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 4 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1408194031,2
--1383351(+) TGGTAC/GAGATG 1 -- us2k10--------
rs1824184471,2
--1383367(+) TCACTA/CTGTTG 1 -- us2k10--------
rs1864004311,2
--1383445(+) TACAGG/TCATGA 1 -- us2k10--------
rs1912064571,2
--1383490(+) TTTTTA/GTGGAG 1 -- us2k10--------
rs1833746881,2
--1383498(+) GAGACA/GGGATC 1 -- us2k10--------
rs1882045701,2
--1383578(+) AAAGTG/TCTGGG 1 -- us2k10--------
rs1931785801,2
--1383606(+) ATGCTC/TCCAGC 1 -- us2k10--------
rs2014394481,2
C--1383725(+) TCTGG-/TTTG  
        
TTGTT
1 -- us2k10--------
rs112479991,2
C,F--1383739(+) TATCCC/TCTATG 1 -- us2k13Minor allele frequency- T:0.27NA WA 122
rs1829041091,2
C--1383879(+) TTTTCA/TTATAG 1 -- us2k10--------

HapMap Linkage Disequilibrium report for CRIPAK (1385340 - 1389782 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for CRIPAK (see all 13):    About this table    
Variant IDTypeSubtypePubMed ID
esv2726793CNV Deletion23290073
esv1697030CNV Deletion17803354
nsv4197CNV Insertion18451855
nsv878347CNV Loss21882294
nsv878344CNV Loss21882294
dgv5405n71CNV Loss21882294
nsv878350CNV Loss21882294
nsv878330CNV Loss21882294
nsv878328CNV Loss21882294
nsv822425CNV Loss20364138

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610203    OMIM disorders: --

3 diseases for CRIPAK:    
About MalaCards
hiv-1    breast cancer    prostatitis


CRIPAK for disorders           About GeneDecksing


Congresses - knowledge worth sharing:
The International Symposium on Pneumococci and Pneumococcal Diseases (ISPPD) 9 - 13 March 2014
Genetic Association Database (GAD): CRIPAK
Human Genome Epidemiology (HuGE) Navigator: CRIPAK (1 document)

Export disorders for CRIPAK gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for CRIPAK gene integrated from 10 sources:
(articles sorted by number of sources associating them with CRIPAK)
    Utopia: connect your pdf to the dynamic
world of online information

  1. CRIPak, a novel endogenous Pak1 inhibitor. (PubMed id 16278681)1, 2, 3 Talukder A.H.... Kumar R. (Oncogene 2006)
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  3. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (Sci Signal 2012)
  4. Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. (PubMed id 21083371)4 Chinn L.W....O'Brien S.J. (J. Infect. Dis. 2010)
  5. Identification of host proteins required for HIV infection through a functional genomic screen. (PubMed id 18187620)1 Brass A.L....Elledge S.J. (Science 2008)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 285464 HGNC: 26619 AceView: FLJ34443 Ensembl:ENSG00000179979 euGenes: HUgn285464
ECgene: CRIPAK H-InvDB: CRIPAK

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for CRIPAK Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for CRIPAK gene:
Search GeneIP for patents involving CRIPAK

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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