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Aliases for CRIP2 Gene

Aliases for CRIP2 Gene

  • Cysteine Rich Protein 2 2 3 5
  • CRP2 3 4
  • Cysteine-Rich Intestinal Protein 3
  • LIM Domain Protein ESP1/CRP2 3
  • Cysteine-Rich Protein 2 3
  • Protein ESP1 4
  • CRP-2 4
  • ESP1 3
  • CRIP 3

External Ids for CRIP2 Gene

Previous GeneCards Identifiers for CRIP2 Gene

  • GC14U990010
  • GC14P099932
  • GC14P103911
  • GC14P103912
  • GC14P105012
  • GC14P105939
  • GC14P086136

Summaries for CRIP2 Gene

Entrez Gene Summary for CRIP2 Gene

  • This gene encodes a putative transcription factor with two LIM zinc-binding domains. The encoded protein may participate in the differentiation of smooth muscle tissue. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2012]

GeneCards Summary for CRIP2 Gene

CRIP2 (Cysteine Rich Protein 2) is a Protein Coding gene. An important paralog of this gene is CRIP3.

Gene Wiki entry for CRIP2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRIP2 Gene

Genomics for CRIP2 Gene

Regulatory Elements for CRIP2 Gene

Enhancers for CRIP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G105192 1.7 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -276.6 -276553 7.2 PKNOX1 ATF1 SIN3A ZNF2 ZBTB7B GLIS2 GATA2 ZNF207 FOS ZNF263 BTBD6 TMEM121 PACS2 NUDT14 IGHA2 CRIP2 JAG2 PIR42636
GH14G105562 1.4 FANTOM5 ENCODE dbSUPER 5 +91.4 91365 3.6 HDGF NFIB ZNF493 YBX1 PLRG1 ZNF48 ZBTB7B ZEB1 EGR1 ZNF207 TMEM121 IGHE ELK2BP ATP5G1P1 CRIP2 IGHA2
GH14G105688 1.2 ENCODE dbSUPER 5 +217.5 217511 3.5 HDGF NFIB ZNF473 ZNF493 INSM2 PLRG1 YBX1 BMI1 ZBTB7B ZNF354C ENSG00000257270 LINC00638 TMEM121 C14orf79 PACS2 CRIP2 IGHV3-48 IGHV3-15 ENSG00000253701 LOC105378185
GH14G104984 1.2 ENCODE dbSUPER 4.8 -487.4 -487360 2.7 HDGF ATF1 ARID4B SIN3A ELK1 ZNF263 SP3 MXD4 REST ZNF579 C14orf79 AHNAK2 GPR132 CRIP2
GH14G104814 1.4 ENCODE dbSUPER 4.1 -657.1 -657141 2.8 CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ZNF610 GLIS1 LINC00638 TMEM121 ENSG00000257270 PACS2 CEP170B CRIP2 ENSG00000279140
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CRIP2 on UCSC Golden Path with GeneCards custom track

Promoters for CRIP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000276319 1962 1801 ZFP64 SIN3A ZBTB7B GLIS2 KLF7 FOS KLF13 SP3 REST ZNF579

Genomic Location for CRIP2 Gene

Chromosome:
14
Start:
105,472,938 bp from pter
End:
105,480,170 bp from pter
Size:
7,233 bases
Orientation:
Plus strand

Genomic View for CRIP2 Gene

Genes around CRIP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CRIP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CRIP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRIP2 Gene

Proteins for CRIP2 Gene

  • Protein details for CRIP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P52943-CRIP2_HUMAN
    Recommended name:
    Cysteine-rich protein 2
    Protein Accession:
    P52943
    Secondary Accessions:
    • A1A4U1
    • B7Z6C0
    • E9PD13

    Protein attributes for CRIP2 Gene

    Size:
    208 amino acids
    Molecular mass:
    22493 Da
    Quaternary structure:
    • Interacts with TGFB1I1.

    Three dimensional structures from OCA and Proteopedia for CRIP2 Gene

    Alternative splice isoforms for CRIP2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CRIP2 Gene

Post-translational modifications for CRIP2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CRIP2 Gene

No data available for DME Specific Peptides for CRIP2 Gene

Domains & Families for CRIP2 Gene

Gene Families for CRIP2 Gene

Protein Domains for CRIP2 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CRIP2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CRIP2: view

No data available for UniProtKB/Swiss-Prot for CRIP2 Gene

Function for CRIP2 Gene

Molecular function for CRIP2 Gene

GENATLAS Biochemistry:
cysteine-rich heart protein 2

Gene Ontology (GO) - Molecular Function for CRIP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008270 zinc ion binding IEA,TAS 8824798
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with CRIP2: view

Phenotypes for CRIP2 Gene

GenomeRNAi human phenotypes for CRIP2:
genes like me logo Genes that share phenotypes with CRIP2: view

Animal Model Products

CRISPR Products

miRNA for CRIP2 Gene

miRTarBase miRNAs that target CRIP2

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CRIP2 Gene

Localization for CRIP2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CRIP2 gene
Compartment Confidence
nucleus 4
cytosol 3
plasma membrane 2

Gene Ontology (GO) - Cellular Components for CRIP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005938 cell cortex IEA --
GO:0031012 colocalizes_with extracellular matrix IDA 20551380
genes like me logo Genes that share ontologies with CRIP2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CRIP2 Gene

Pathways & Interactions for CRIP2 Gene

SuperPathways for CRIP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CRIP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008284 positive regulation of cell proliferation IEA --
GO:0030097 hemopoiesis IEA --
genes like me logo Genes that share ontologies with CRIP2: view

No data available for Pathways by source and SIGNOR curated interactions for CRIP2 Gene

Drugs & Compounds for CRIP2 Gene

(1) Drugs for CRIP2 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(1) Additional Compounds for CRIP2 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with CRIP2: view

Transcripts for CRIP2 Gene

Unigene Clusters for CRIP2 Gene

Cysteine-rich protein 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CRIP2 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b · 13c · 13d
SP1: - - - - - - -
SP2: - - -
SP3: - - - - - - - -
SP4: - - - - - - - -
SP5: - - - - - - - - -
SP6: - - -
SP7: - - -
SP8: - - - - -
SP9: - - - - - - - - - - - - - -
SP10: - - - - - -
SP11:

Relevant External Links for CRIP2 Gene

GeneLoc Exon Structure for
CRIP2
ECgene alternative splicing isoforms for
CRIP2

Expression for CRIP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CRIP2 Gene

mRNA differential expression in normal tissues according to GTEx for CRIP2 Gene

This gene is overexpressed in Heart - Atrial Appendage (x5.8) and Heart - Left Ventricle (x5.6).

Protein differential expression in normal tissues from HIPED for CRIP2 Gene

This gene is overexpressed in Hair follicle (9.4) and Fetal heart (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CRIP2 Gene



Protein tissue co-expression partners for CRIP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of CRIP2 Gene:

CRIP2

SOURCE GeneReport for Unigene cluster for CRIP2 Gene:

Hs.534309

mRNA Expression by UniProt/SwissProt for CRIP2 Gene:

P52943-CRIP2_HUMAN
Tissue specificity: Widespread tissue expression; highest levels in the heart.

Evidence on tissue expression from TISSUES for CRIP2 Gene

  • Heart(4.7)
  • Lung(4.6)
  • Nervous system(4.3)
  • Liver(4.2)
  • Pancreas(3.6)
  • Muscle(2.7)
  • Kidney(2)
genes like me logo Genes that share expression patterns with CRIP2: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for CRIP2 Gene

Orthologs for CRIP2 Gene

This gene was present in the common ancestor of animals.

Orthologs for CRIP2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CRIP2 34
  • 89.74 (n)
dog
(Canis familiaris)
Mammalia CRIP2 34 35
  • 88.46 (n)
mouse
(Mus musculus)
Mammalia Crip2 35
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CRIP2 35
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1563606 34
  • 84.65 (n)
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 64 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia CRIP2 35
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves CRIP2 35
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CRIP2 35
  • 82 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.28352 34
zebrafish
(Danio rerio)
Actinopterygii crip2 34 35
  • 70.71 (n)
zgc:101840 35
  • 69 (a)
ManyToMany
Dr.5660 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9800 34
worm
(Caenorhabditis elegans)
Secernentea exc-9 35
  • 58 (a)
ManyToMany
valv-1 35
  • 58 (a)
ManyToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7243 34
Species where no ortholog for CRIP2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for CRIP2 Gene

ENSEMBL:
Gene Tree for CRIP2 (if available)
TreeFam:
Gene Tree for CRIP2 (if available)

Paralogs for CRIP2 Gene

Paralogs for CRIP2 Gene

(14) SIMAP similar genes for CRIP2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with CRIP2: view

Variants for CRIP2 Gene

Sequence variations from dbSNP and Humsavar for CRIP2 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1001013417 -- 105,474,085(+) CCTGG(A/G)AGGCA intron-variant, upstream-variant-2KB
rs1002196638 -- 105,474,010(+) CCCTG(C/G)GTGGA intron-variant, upstream-variant-2KB
rs1002227634 -- 105,473,699(+) GGGTG(C/T)GGAGG intron-variant, upstream-variant-2KB
rs1002460344 -- 105,479,338(+) CCCTC(C/T)CCCCC intron-variant
rs1002740023 -- 105,478,188(+) TGGGG(C/G)TGGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CRIP2 Gene

Variant ID Type Subtype PubMed ID
dgv3987n54 CNV loss 21841781
dgv3988n54 CNV gain 21841781
dgv3989n54 CNV gain 21841781
dgv3990n54 CNV gain 21841781
dgv3991n54 CNV loss 21841781
dgv3992n54 CNV gain+loss 21841781
dgv3993n54 CNV gain 21841781
dgv3994n54 CNV gain 21841781
dgv3995n54 CNV loss 21841781
dgv3996n54 CNV gain 21841781
dgv3997n54 CNV loss 21841781
dgv3998n54 CNV loss 21841781
dgv3999n54 CNV loss 21841781
esv1004211 CNV insertion 20482838
esv1077360 CNV deletion 17803354
esv21791 CNV loss 19812545
esv2749298 CNV deletion 23290073
esv2760014 CNV loss 17122850
esv2856347 CNV duplication 24192839
esv3398322 CNV duplication 20981092
esv3635645 CNV gain 21293372
nsv1054190 CNV gain 25217958
nsv1113680 CNV deletion 24896259
nsv1160204 CNV duplication 26073780
nsv1440 CNV insertion 18451855
nsv470679 CNV loss 18288195
nsv513421 CNV insertion 21212237
nsv517055 CNV gain+loss 19592680
nsv566189 CNV gain 21841781
nsv566204 CNV gain 21841781
nsv566206 CNV loss 21841781
nsv566207 CNV loss 21841781
nsv566209 CNV gain+loss 21841781
nsv566210 CNV gain 21841781
nsv566218 CNV loss 21841781
nsv566219 CNV gain 21841781
nsv566220 CNV gain+loss 21841781
nsv566229 CNV loss 21841781
nsv566259 CNV gain+loss 21841781
nsv566265 CNV loss 21841781
nsv817647 CNV gain 17921354
nsv827088 CNV gain 20364138
nsv832890 CNV loss 17160897
nsv9177 CNV gain 18304495
nsv952282 CNV deletion 24416366

Variation tolerance for CRIP2 Gene

Gene Damage Index Score: 0.99; 20.45% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CRIP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CRIP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CRIP2 Gene

Disorders for CRIP2 Gene

Relevant External Links for CRIP2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CRIP2

No disorders were found for CRIP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CRIP2 Gene

Publications for CRIP2 Gene

  1. Human ESP1/CRP2, a member of the LIM domain protein family: characterization of the cDNA and assignment of the gene locus to chromosome 14q32.3. (PMID: 8824798) Karim M.A. … Indo Y. (Genomics 1996) 3 4 22 64
  2. A novel cDNA encoding for a LIM domain protein located at human chromosome 14q32 as a candidate for leukemic translocation. (PMID: 8843343) Tsui S.K.W. … Lee C.Y. (Biochem. Mol. Biol. Int. 1996) 2 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Cloning and characterization of mCRIP2, a mouse LIM-only protein that interacts with PDZ domain IV of PTP-BL. (PMID: 12839623) van Ham M. … Hendriks W. (Genes Cells 2003) 3 22 64

Products for CRIP2 Gene

Sources for CRIP2 Gene

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