Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CRHR1-IT1 Gene

Subcategory (RNA class) for CRHR1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CRHR1-IT1 Gene

  • CRHR1 Intronic Transcript 1 2 3 4 5
  • CRHR1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • C17orf69 3 4
  • Chromosome 17 Open Reading Frame 69 2
  • MGC57346 3

External Ids for CRHR1-IT1 Gene

Previous HGNC Symbols for CRHR1-IT1 Gene

  • C17orf69

Previous GeneCards Identifiers for CRHR1-IT1 Gene

  • GC17P043702
  • GC17P043707
  • GC17P043736
  • GC17P045623

Summaries for CRHR1-IT1 Gene

GeneCards Summary for CRHR1-IT1 Gene

CRHR1-IT1 (CRHR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRHR1-IT1 Gene

Genomics for CRHR1-IT1 Gene

Regulatory Elements for CRHR1-IT1 Gene

Enhancers for CRHR1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F046150 1.1 Ensembl ENCODE 101.9 +535.2 535173 10.6 HDGF PKNOX1 WRNIP1 FEZF1 ZNF2 ZNF121 GLIS2 GATA2 CBX5 JUNB CRHR1-IT1 LRRC37A4P LOC102724391 ARL17B KANSL1 RPS7P11 NSFP1 ENSG00000224505 LRRC37A17P KANSL1-AS1
GH17F046190 1.5 FANTOM5 Ensembl ENCODE 101.8 +573.4 573354 7.8 CREB3L1 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 CRHR1-IT1 LRRC37A4P ARL17B KANSL1 LOC102724391 RPS7P11 LRRC37A2 KANSL1-AS1 NSFP1 LRRC37A17P
GH17F046028 0.8 ENCODE 101.6 +408.7 408716 1.1 CTCF PKNOX1 TFAP4 TEAD1 ZMYM3 TEAD3 ZNF121 POLR2A ZNF585B PRDM1 CRHR1-IT1 LRRC37A17P STH ARL17B LOC102724391 GC17P046010 GC17P046011
GH17F046100 0.8 Ensembl ENCODE 101.5 +481.7 481732 3.9 HDGF PKNOX1 ARNT CREB3L1 SIN3A FEZF1 ZNF2 ZNF263 SP3 REST CRHR1-IT1 ARL17B KANSL1 LOC102724391 RPS7P11 ENSG00000224505 MAP3K14 HEXIM1 KANSL1-AS1 PIR51062
GH17F046024 1 Ensembl ENCODE 95.1 +406.0 406011 3.6 SOX13 CTCF ESRRA SAP130 ARID4B CEBPG RAD21 ZNF48 ZNF316 CTBP1 CRHR1-IT1 LRRC37A4P LRRC37A2 NSFP1 LRRC37A STH KANSL1-AS1 LOC102724391 GC17P046010 GC17P046011
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CRHR1-IT1 on UCSC Golden Path with GeneCards custom track

Promoters for CRHR1-IT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001536200 273 2000 HDGF PKNOX1 ZNF48 ZEB1 ZNF143 ZNF391 EGR2 SP3 NFYC REST

Genomic Location for CRHR1-IT1 Gene

Chromosome:
17
Start:
45,620,328 bp from pter
End:
45,655,156 bp from pter
Size:
34,829 bases
Orientation:
Plus strand

Genomic View for CRHR1-IT1 Gene

Genes around CRHR1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CRHR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CRHR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRHR1-IT1 Gene

Proteins for CRHR1-IT1 Gene

  • Protein details for CRHR1-IT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LR1-CRIT1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by CRHR1-IT1
    Protein Accession:
    Q96LR1
    Secondary Accessions:
    • C9JG53

    Protein attributes for CRHR1-IT1 Gene

    Size:
    157 amino acids
    Molecular mass:
    16895 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CRHR1-IT1 Gene

Post-translational modifications for CRHR1-IT1 Gene

No data available for DME Specific Peptides for CRHR1-IT1 Gene

Domains & Families for CRHR1-IT1 Gene

Protein Domains for CRHR1-IT1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CRHR1-IT1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CRHR1-IT1 Gene

Function for CRHR1-IT1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CRHR1-IT1 Gene

Localization for CRHR1-IT1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CRHR1-IT1 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for CRHR1-IT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with CRHR1-IT1: view

No data available for Subcellular locations from COMPARTMENTS for CRHR1-IT1 Gene

Pathways & Interactions for CRHR1-IT1 Gene

SuperPathways for CRHR1-IT1 Gene

No Data Available

Interacting Proteins for CRHR1-IT1 Gene

Gene Ontology (GO) - Biological Process for CRHR1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CRHR1-IT1 Gene

Transcripts for CRHR1-IT1 Gene

Unigene Clusters for CRHR1-IT1 Gene

CRHR1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CRHR1-IT1 Gene

No ASD Table

Relevant External Links for CRHR1-IT1 Gene

GeneLoc Exon Structure for
CRHR1-IT1
ECgene alternative splicing isoforms for
CRHR1-IT1

Expression for CRHR1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CRHR1-IT1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CRHR1-IT1 Gene



SOURCE GeneReport for Unigene cluster for CRHR1-IT1 Gene:

Hs.128813
genes like me logo Genes that share expression patterns with CRHR1-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CRHR1-IT1 Gene

Orthologs for CRHR1-IT1 Gene

Evolution for CRHR1-IT1 Gene

ENSEMBL:
Gene Tree for CRHR1-IT1 (if available)
TreeFam:
Gene Tree for CRHR1-IT1 (if available)

No data available for Orthologs for CRHR1-IT1 Gene

Paralogs for CRHR1-IT1 Gene

No data available for Paralogs for CRHR1-IT1 Gene

Variants for CRHR1-IT1 Gene

Sequence variations from dbSNP and Humsavar for CRHR1-IT1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1055239 -- 45,642,244(+) TGTTG(A/G)AATAC intron-variant, nc-transcript-variant
rs10579517 -- 45,638,812(+) TTATT(-/TATG)TTATT intron-variant, upstream-variant-2KB
rs111351366 -- 45,638,193(+) GCCAC(C/T)ACGCC intron-variant, upstream-variant-2KB
rs111594148 -- 45,635,683(+) GCTTG(C/T)ATTCT intron-variant
rs111653144 -- 45,619,170(+) CACCT(C/T)GGCCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CRHR1-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv1764e59 CNV duplication 20981092
dgv3176n100 CNV gain 25217958
esv26189 CNV gain+loss 19812545
esv2758691 CNV gain+loss 17122850
esv2758691 CNV gain+loss 17122850
esv2762433 CNV gain+loss 21179565
esv2762433 CNV gain+loss 21179565
esv3640670 CNV loss 21293372
nsv1060303 CNV gain 25217958
nsv1060303 CNV gain 25217958
nsv1126461 CNV deletion 24896259
nsv1133406 CNV deletion 24896259
nsv1133406 CNV deletion 24896259
nsv1144804 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv1146669 OTHER inversion 26484159
nsv2066 CNV insertion 18451855
nsv457744 CNV gain 19166990
nsv575137 CNV loss 21841781
nsv575138 CNV gain 21841781
nsv833458 CNV gain 17160897
nsv833458 CNV gain 17160897
nsv9563 CNV gain+loss 18304495
nsv960491 CNV duplication 23825009

Relevant External Links for CRHR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CRHR1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CRHR1-IT1 Gene

Disorders for CRHR1-IT1 Gene

Relevant External Links for CRHR1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CRHR1-IT1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CRHR1-IT1

No disorders were found for CRHR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CRHR1-IT1 Gene

Publications for CRHR1-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies. (PMID: 21292315) . … Wood N.W. (Lancet 2011) 3 64
  3. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim Y.C. … Wang S.M. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3 64
  4. Genome-wide association study reveals genetic risk underlying Parkinson's disease. (PMID: 19915575) SimA^n-SA!nchez J. … Gasser T. (Nat. Genet. 2009) 3 64
  5. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4 64

Products for CRHR1-IT1 Gene

Sources for CRHR1-IT1 Gene

Content
Loading form....