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CREG2 Gene

protein-coding   GIFtS: 41
GCID: GC02M101964

Cellular Repressor Of E1A-Stimulated Genes 2

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Cellular Repressor Of E1A-Stimulated Genes 21 2
Protein CREG22

External Ids:    HGNC: 142721   Entrez Gene: 2004072   Ensembl: ENSG000001758747   UniProtKB: Q8IUH23   

Export aliases for CREG2 gene to outside databases

Previous GC identifers: GC02M100417 GC02M101569 GC02M101586 GC02M101423 GC02M101331 GC02M095728


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CREG2 Gene:
CREG2 (cellular repressor of E1A-stimulated genes 2) is a protein-coding gene. Diseases associated with CREG2 include fainting. GO annotations related to this gene include oxidoreductase activity and FMN binding. An important paralog of this gene is CREG1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the CREG2 gene promoter:
         AhR   TBP   Pax-5   CUTL1   Tal-1beta   AREB6   PPAR-gamma1   Nkx6-1   PPAR-gamma2   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCREG2 promoter sequence
   Search Chromatin IP Primers for CREG2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CREG2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q11.2   Ensembl cytogenetic band:  2q11.2   HGNC cytogenetic band: 2q12.1

CREG2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CREG2 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M101964:  view genomic region     (about GC identifiers)

Start:
101,962,013 bp from pter      End:
102,004,057 bp from pter
Size:
42,045 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CREG2_HUMAN, Q8IUH2 (See protein sequence)
Recommended Name: Protein CREG2 precursor  
Size: 290 amino acids; 32109 Da
Sequence caution: Sequence=BAC04464.1; Type=Erroneous initiation;
Secondary accessions: Q86X03 Q8N540 Q8N9E3

Explore the universe of human proteins at neXtProt for CREG2: NX_Q8IUH2

Explore proteomics data for CREG2 at MOPED

Post-translational modifications: 

  • It is not sure whether N-glycosylation is on Asn-165 and/or Asn-1661
  • Glycosylation2 at Asn165, Asn166

  • See CREG2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_722578.1  
    ENSEMBL proteins: 
     ENSP00000315203  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR012349 Split_barrel_FMN-bd
     IPR014631 CREG

    Graphical View of Domain Structure for InterPro Entry Q8IUH2

    ProtoNet protein and cluster: Q8IUH2

    UniProtKB/Swiss-Prot: CREG2_HUMAN, Q8IUH2
    Similarity: Belongs to the CREG family


    CREG2 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0010181FMN binding IEA--
    GO:0016491oxidoreductase activity IEA--
         
    CREG2 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for CREG2:
     Increased S DNA content 

    Animal Models:
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    hsa-miR-549 hsa-miR-579 hsa-miR-4311 hsa-miR-3942-5p hsa-miR-1271 hsa-miR-578 hsa-miR-3921 hsa-miR-20b*
    SwitchGear 3'UTR luciferase reporter plasmidCREG2 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    CREG2_HUMAN, Q8IUH2: Secreted
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular5
    endoplasmic reticulum2
    golgi apparatus2
    mitochondrion2
    nucleus1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--
    GO:0005783endoplasmic reticulum IEA--
    GO:0005794Golgi apparatus IEA--

    CREG2 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CREG2
    Interactions:

        Search GeneGlobe Interaction Network for CREG2

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0055114oxidation-reduction process ----

    CREG2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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      Browse compounds at ApexBio 

    Browse Tocris compounds for CREG2



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for CREG2 gene: 
    NM_153836.3  

    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000324768(uc002tba.2) ENST00000495455 ENST00000486966
    miRNA
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    hsa-miR-549 hsa-miR-579 hsa-miR-4311 hsa-miR-3942-5p hsa-miR-1271 hsa-miR-578 hsa-miR-3921 hsa-miR-20b*
    SwitchGear 3'UTR luciferase reporter plasmidCREG2 3' UTR sequence
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat CREG2
      QuantiFast Probe-based Assays in human, mouse, rat CREG2

    23 AceView cDNA sequences:

    AW005558 BU619510 BC047514 CK024221 BI599413 AW135480 AK094970 NM_153836 
    BC032949 AB046109 BF967008 H09317 BI549204 BF966862 H09375 BG706599 
    BG678363 BG705165 BF966119 BG036705 BG700682 BF511764 BF818562 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CREG2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAATAAGGC
    CREG2 Expression
    About this image

    CREG2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CREG2 Protein Expression

    UniProtKB/Swiss-Prot: CREG2_HUMAN, Q8IUH2
    Tissue specificity: Brain specific mainly in the limbic system and faintly in the spinal cord but not in
    cerebellum

        Custom PCR Arrays for CREG2
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    QuantiFast Probe-based Assays in human, mouse, rat CREG2
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CREG2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CREG2 gene from Selected species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Creg21 , 5 cellular repressor of E1A-stimulated genes 21, 5 83.03(n)1
    83.27(a)1
      1 (18.37 cM)5
    2637641  NM_170597.41  NP_733485.11 
     396184065 
    chicken
    (Gallus gallus)
    Aves CREG21 cellular repressor of E1A-stimulated genes 2 72.16(n)
    65.92(a)
      770646  XM_001233981.3  XP_001233982.2 
    lizard
    (Anolis carolinensis)
    Reptilia CREG26
    cellular repressor of E1A-stimulated genes 2
    59(a)
    1 ↔ 1
    GL343542.1(78994-102698)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia creg21 cellular repressor of E1A-stimulated genes 2 60.78(n)
    51.88(a)
      100491889  XM_002934507.2  XP_002934553.1 
    zebrafish
    (Danio rerio)
    Actinopterygii creg21 cellular repressor of E1A-stimulated genes 2 58.27(n)
    50.38(a)
      492339  NM_001007305.1  NP_001007306.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CREG6
    Cellular Repressor of E1A-stimulated Genes
    21(a)
    1 → many
    3R(13218994-13220362)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G046901 AT2G04690 51.38(n)
    43.95(a)
      815012  NM_126499.3  NP_178546.2 
    rice
    (Oryza sativa)
    Liliopsida Os06g02383001 Os06g0238300 50.5(n)
    41.92(a)
      4340612  NM_001063790.1  NP_001057255.1 


    ENSEMBL Gene Tree for CREG2 (if available)
    TreeFam Gene Tree for CREG2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CREG2 gene
    CREG12  
    1 SIMAP similar gene for CREG2 using alignment to 3 protein entries:     CREG2_HUMAN (see all proteins):
    CREG1

    CREG2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for CREG2 (see all 825)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs44567261,2
    C,F,H--101964316(+) ttttaC/Tgaatt 1 -- ds500112Minor allele frequency- T:0.38NA WA CSA EA 378
    rs45741351,2
    C,F,H--101964413(+) tttatG/Ttttac 1 -- ds500111Minor allele frequency- T:0.38NA WA CSA EA 376
    rs1478793701,2
    --101964485(+) TTCCTA/GTGGAT 1 -- ds50010--------
    rs1162154501,2
    C,F--101964583(+) GTGTGG/AGCCTA 1 -- ds50011Minor allele frequency- A:0.03WA 118
    rs1404217741,2
    --101964636(+) CTCCAA/CCAAAT 1 -- ds50010--------
    rs101669001,2
    C,F,H--101964726(+) caagaT/Ctgttt 1 -- ds500123Minor allele frequency- C:0.36NS EA NA WA CSA 2348
    rs1504956121,2
    --101964780(+) AAGCTC/TGTATA 1 -- ds50010--------
    rs1881162581,2
    --101964891(+) AAGAAC/GATGGT 1 -- ut310--------
    rs48514251,2
    C,F,H--101965020(+) atggtA/Gttgtg 1 -- ut3110Minor allele frequency- G:0.42NA WA EA 372
    rs48509661,2
    C,F,A,H--101965113(+) CCTTGC/TTGCAC 1 -- ut3132Minor allele frequency- T:0.36NS EA NA WA CSA 2910

    HapMap Linkage Disequilibrium report for CREG2 (101962013 - 102004057 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for CREG2:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2423576CNV Deletion19546169
    esv2147665CNV Deletion18987734
    esv2720447CNV Deletion23290073
    esv4768CNV Deletion18987735
    esv1298629CNV Deletion17803354
    esv8755CNV Loss19470904
    nsv511800CNV Loss21212237
    esv34123CNV Loss18971310

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for CREG2:    
    About MalaCards
    fainting


    CREG2 for disorders           About GeneDecksing

    Genetic Association Database (GAD): CREG2

    Export disorders for CREG2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CREG2 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with CREG2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification and characterization of novel members of the CREG family, putative secreted glycoproteins expressed specifically in brain. (PubMed id 12408961)1, 2, 3, 9 Kunita R.... Ikeda J.-E. (Genomics 2002)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 200407 HGNC: 14272 AceView: CREG2 Ensembl:ENSG00000175874 euGenes: HUgn200407
    ECgene: CREG2 H-InvDB: CREG2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CREG2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CREG2 gene:
    Search GeneIP for patents involving CREG2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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