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Aliases for CPSF2 Gene

Aliases for CPSF2 Gene

  • Cleavage And Polyadenylation Specific Factor 2 2 3 5
  • Cleavage And Polyadenylation Specificity Factor 100 KDa Subunit 3 4
  • Cleavage And Polyadenylation Specific Factor 2, 100kDa 2 3
  • CPSF 100 KDa Subunit 3 4
  • CPSF100 3 4
  • Cleavage And Polyadenylation Specific Factor 2, 100kD Subunit 2
  • CPSF 100kDa Subunit 3
  • KIAA1367 4

External Ids for CPSF2 Gene

Previous GeneCards Identifiers for CPSF2 Gene

  • GC14P090094
  • GC14P086404
  • GC14P090578
  • GC14P091658
  • GC14P092588
  • GC14P072769

Summaries for CPSF2 Gene

GeneCards Summary for CPSF2 Gene

CPSF2 (Cleavage And Polyadenylation Specific Factor 2) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression. GO annotations related to this gene include RNA binding. An important paralog of this gene is CPSF3.

UniProtKB/Swiss-Prot for CPSF2 Gene

  • Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. Involved in the histone 3 end pre-mRNA processing.

Gene Wiki entry for CPSF2 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPSF2 Gene

Genomics for CPSF2 Gene

Regulatory Elements for CPSF2 Gene

Enhancers for CPSF2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CPSF2 on UCSC Golden Path with GeneCards custom track

Promoters for CPSF2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CPSF2 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the CPSF2 gene promoter:

Genomic Location for CPSF2 Gene

Chromosome:
14
Start:
92,121,937 bp from pter
End:
92,172,145 bp from pter
Size:
50,209 bases
Orientation:
Plus strand

Genomic View for CPSF2 Gene

Genes around CPSF2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPSF2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPSF2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPSF2 Gene

Proteins for CPSF2 Gene

  • Protein details for CPSF2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P2I0-CPSF2_HUMAN
    Recommended name:
    Cleavage and polyadenylation specificity factor subunit 2
    Protein Accession:
    Q9P2I0
    Secondary Accessions:
    • B3KME1
    • Q6NSJ1
    • Q9H3W7

    Protein attributes for CPSF2 Gene

    Size:
    782 amino acids
    Molecular mass:
    88487 Da
    Quaternary structure:
    • Component of the cleavage and polyadenylation specificity factor (CPSF) complex, composed of CPSF1, CPSF2, CPSF3, CPSF4 and FIP1L1. Interacts with CPSF3, CSTF2 and SYMPK. Interacts with ZC3H3 (By similarity).

neXtProt entry for CPSF2 Gene

Proteomics data for CPSF2 Gene at MOPED

Post-translational modifications for CPSF2 Gene

  • Ubiquitination at Lys 130, Lys 324, Lys 375, and Lys 725
  • Modification sites at PhosphoSitePlus

Other Protein References for CPSF2 Gene

Antibody Products

  • Abcam antibodies for CPSF2

No data available for DME Specific Peptides for CPSF2 Gene

Domains & Families for CPSF2 Gene

Protein Domains for CPSF2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9P2I0

UniProtKB/Swiss-Prot:

CPSF2_HUMAN :
  • Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily.
Family:
  • Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily.
genes like me logo Genes that share domains with CPSF2: view

No data available for Gene Families for CPSF2 Gene

Function for CPSF2 Gene

Molecular function for CPSF2 Gene

UniProtKB/Swiss-Prot Function:
Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. Involved in the histone 3 end pre-mRNA processing.
genes like me logo Genes that share phenotypes with CPSF2: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CPSF2 Gene

Localization for CPSF2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CPSF2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CPSF2 Gene COMPARTMENTS Subcellular localization image for CPSF2 gene
Compartment Confidence
nucleus 5
cytosol 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for CPSF2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with CPSF2: view

Pathways & Interactions for CPSF2 Gene

genes like me logo Genes that share pathways with CPSF2: view

Pathways by source for CPSF2 Gene

Gene Ontology (GO) - Biological Process for CPSF2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000398 mRNA splicing, via spliceosome TAS --
GO:0006366 transcription from RNA polymerase II promoter TAS --
GO:0006369 termination of RNA polymerase II transcription TAS --
GO:0006378 mRNA polyadenylation IEA --
GO:0006379 mRNA cleavage IEA --
genes like me logo Genes that share ontologies with CPSF2: view

No data available for SIGNOR curated interactions for CPSF2 Gene

Drugs & Compounds for CPSF2 Gene

No Compound Related Data Available

Transcripts for CPSF2 Gene

Unigene Clusters for CPSF2 Gene

Cleavage and polyadenylation specific factor 2, 100kDa:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CPSF2 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b
SP1: -
SP2: - - - - -
SP3:

Relevant External Links for CPSF2 Gene

GeneLoc Exon Structure for
CPSF2
ECgene alternative splicing isoforms for
CPSF2

Expression for CPSF2 Gene

mRNA expression in normal human tissues for CPSF2 Gene

Protein differential expression in normal tissues from HIPED for CPSF2 Gene

This gene is overexpressed in Lymph node (14.2), Peripheral blood mononuclear cells (6.7), and Bone (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CPSF2 Gene



SOURCE GeneReport for Unigene cluster for CPSF2 Gene Hs.657632

genes like me logo Genes that share expression patterns with CPSF2: view

Protein tissue co-expression partners for CPSF2 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CPSF2 Gene

Orthologs for CPSF2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CPSF2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CPSF2 35
  • 93.52 (n)
  • 99.62 (a)
CPSF2 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CPSF2 35
  • 93.82 (n)
  • 99.62 (a)
CPSF2 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cpsf2 35
  • 88.7 (n)
  • 97.95 (a)
Cpsf2 16
Cpsf2 36
  • 98 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CPSF2 35
  • 99.7 (n)
  • 100 (a)
CPSF2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cpsf2 35
  • 89.09 (n)
  • 98.34 (a)
oppossum
(Monodelphis domestica)
Mammalia CPSF2 36
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CPSF2 36
  • 98 (a)
OneToOne
chicken
(Gallus gallus)
Aves CPSF2 35
  • 84.21 (n)
  • 96.16 (a)
CPSF2 36
  • 96 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CPSF2 36
  • 95 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cpsf2 35
  • 79.41 (n)
  • 92.2 (a)
African clawed frog
(Xenopus laevis)
Amphibia cpsf2-A 35
zebrafish
(Danio rerio)
Actinopterygii cpsf2 35
  • 72.98 (n)
  • 86.45 (a)
Dr.12526 35
cpsf2 36
  • 86 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta BcDNA:LD14168 37
  • 53 (a)
Cpsf100 35
  • 56.94 (n)
  • 58.34 (a)
Cpsf100 36
  • 57 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002474 35
  • 56.64 (n)
  • 58.23 (a)
worm
(Caenorhabditis elegans)
Secernentea F09G2.4 37
  • 41 (a)
cpsf-2 35
  • 53.63 (n)
  • 45.34 (a)
cpsf-2 36
  • 41 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes CFT2 36
  • 21 (a)
OneToOne
CFT2 38
thale cress
(Arabidopsis thaliana)
eudicotyledons CPSF100 35
  • 50.51 (n)
  • 41.48 (a)
rice
(Oryza sativa)
Liliopsida Os09g0569400 35
  • 50.35 (n)
  • 41.75 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.13623 35
Species with no ortholog for CPSF2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CPSF2 Gene

ENSEMBL:
Gene Tree for CPSF2 (if available)
TreeFam:
Gene Tree for CPSF2 (if available)

Paralogs for CPSF2 Gene

Paralogs for CPSF2 Gene

genes like me logo Genes that share paralogs with CPSF2: view

Variants for CPSF2 Gene

Sequence variations from dbSNP and Humsavar for CPSF2 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs7140188 -- 92,125,634(+) AAGGC(C/G)TTTCA intron-variant
rs7141379 -- 92,126,414(+) GTGGT(A/G/T)CAGTA intron-variant
rs7142318 -- 92,164,621(+) TAAAA(A/T)GAAAT downstream-variant-500B
rs8018374 -- 92,125,025(+) AACCT(C/T)CATTG intron-variant
rs7144605 -- 92,144,259(+) gtgta(A/T)gatct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CPSF2 Gene

Variant ID Type Subtype PubMed ID
dgv1975n71 CNV Loss 21882294
nsv902190 CNV Loss 21882294
nsv1397 CNV Insertion 18451855
esv999869 CNV Insertion 20482838
esv1267299 CNV Insertion 17803354

Variation tolerance for CPSF2 Gene

Residual Variation Intolerance Score: 12.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.93; 19.22% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for CPSF2 Gene

Disorders for CPSF2 Gene

Relevant External Links for CPSF2

Genetic Association Database (GAD)
CPSF2
Human Genome Epidemiology (HuGE) Navigator
CPSF2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CPSF2

No disorders were found for CPSF2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPSF2 Gene

Publications for CPSF2 Gene

  1. Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes. (PMID: 21546767) Murea M. … Freedman B.I. (Am. J. Nephrol. 2011) 3 48 67
  2. Assignment of the 100-kDa subunit of cleavage and polyadenylation specificity factor (CPSF2) to human chromosome 14q31.3 by radiation hybrid mapping. (PMID: 11124543) Samiotaki M. … Tsiapalis C.M. (Cytogenet. Cell Genet. 2000) 2 3
  3. Characterization of cleavage and polyadenylation specificity factor and cloning of its 100-kilodalton subunit. (PMID: 7969155) Jenny A. … Keller W. (Mol. Cell. Biol. 1994) 2 3
  4. Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes. (PMID: 25609649) Li X. … Chen J. (Mol. Syst. Biol. 2015) 3
  5. Global Promotion of Alternative Internal Exon Usage by mRNA 3' End Formation Factors. (PMID: 25921069) Misra A. … Green M.R. (Mol. Cell 2015) 3

Products for CPSF2 Gene

Sources for CPSF2 Gene

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