Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CPS1-IT1 Gene

Subcategory (RNA class) for CPS1-IT1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CPS1-IT1 Gene

  • CPS1 Intronic Transcript 1 2 3 5
  • CPS1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • CPS1 Intronic Transcript (Non-Protein Coding) 3
  • CPS1-IT 3
  • CPS1IT1 3
  • PRO0132 3
  • CPS1IT 3

External Ids for CPS1-IT1 Gene

ORGUL Members for CPS1-IT1 Gene

Previous HGNC Symbols for CPS1-IT1 Gene

  • CPS1IT

Previous GeneCards Identifiers for CPS1-IT1 Gene

  • GC02P211485

Summaries for CPS1-IT1 Gene

Entrez Gene Summary for CPS1-IT1 Gene

  • This gene does not encode a protein, and it is located within an intron of the gene encoding carbamoyl-phosphate synthetase 1. [provided by RefSeq, Jul 2008]

GeneCards Summary for CPS1-IT1 Gene

CPS1-IT1 (CPS1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CPS1-IT1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPS1-IT1 Gene

Genomics for CPS1-IT1 Gene

GeneHancer (GH) Regulatory Elements for CPS1-IT1 Gene

Promoters and enhancers for CPS1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I210620 Enhancer 0.4 ENCODE 0.8 +3.2 3181 0.2 SP1 HLF CEBPB CPS1 CPS1-IT1 GC02P210656
GH02I210627 Enhancer 0.6 Ensembl 0.4 +9.5 9530 0.2 NR2F1 JUNB DPF2 BATF IRF4 BCL11A IKZF1 IKZF2 SPI1 CPS1-IT1 GC02P210656 CPS1
GH02I210576 Enhancer 0.8 ENCODE 0.3 -39.7 -39697 2.3 CTCF CEBPG RAD21 TEAD3 ZNF316 RERE ZNF143 SMARCC2 SMC3 ATF7 CPS1 GC02P210573 CPS1-IT1
GH02I210593 Promoter 0.5 EPDnew 0.3 -24.2 -24188 0.1 CPS1 GC02P210573 CPS1-IT1
GH02I210580 Enhancer 0.2 FANTOM5 0.3 -36.7 -36685 0.1 CPS1 GC02P210573 CPS1-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CPS1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CPS1-IT1 Gene

Genomic Locations for CPS1-IT1 Gene
chr2:210,617,571-210,619,876
(GRCh38/hg38)
Size:
2,306 bases
Orientation:
Plus strand
chr2:211,482,295-211,484,600
(GRCh37/hg19)

Genomic View for CPS1-IT1 Gene

Genes around CPS1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPS1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPS1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPS1-IT1 Gene

Proteins for CPS1-IT1 Gene

Post-translational modifications for CPS1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CPS1-IT1 Gene

Domains & Families for CPS1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CPS1-IT1 Gene

Function for CPS1-IT1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPS1-IT1 Gene

Localization for CPS1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CPS1-IT1 Gene

Pathways & Interactions for CPS1-IT1 Gene

SuperPathways for CPS1-IT1 Gene

No Data Available

Interacting Proteins for CPS1-IT1 Gene

Gene Ontology (GO) - Biological Process for CPS1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CPS1-IT1 Gene

Drugs & Compounds for CPS1-IT1 Gene

No Compound Related Data Available

Transcripts for CPS1-IT1 Gene

mRNA/cDNA for CPS1-IT1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CPS1-IT1 Gene

CPS1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CPS1-IT1 Gene

No ASD Table

Relevant External Links for CPS1-IT1 Gene

GeneLoc Exon Structure for
CPS1-IT1
ECgene alternative splicing isoforms for
CPS1-IT1

Expression for CPS1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CPS1-IT1 Gene

SOURCE GeneReport for Unigene cluster for CPS1-IT1 Gene:

Hs.658398
genes like me logo Genes that share expression patterns with CPS1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CPS1-IT1 Gene

Orthologs for CPS1-IT1 Gene

Evolution for CPS1-IT1 Gene

ENSEMBL:
Gene Tree for CPS1-IT1 (if available)
TreeFam:
Gene Tree for CPS1-IT1 (if available)

No data available for Orthologs for CPS1-IT1 Gene

Paralogs for CPS1-IT1 Gene

No data available for Paralogs for CPS1-IT1 Gene

Variants for CPS1-IT1 Gene

Sequence variations from dbSNP and Humsavar for CPS1-IT1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs2287599 conflicting-interpretations-of-pathogenicity, benign, not specified, Congenital hyperammonemia, type I 210,616,533(+) C/G/T upstream_transcript_variant
rs1000268110 -- 210,617,812(+) T/C non_coding_transcript_variant
rs1000367622 -- 210,619,350(+) G/A non_coding_transcript_variant
rs1000870239 -- 210,616,015(+) A/T upstream_transcript_variant
rs1001608674 -- 210,618,806(+) G/A non_coding_transcript_variant

Additional Variant Information for CPS1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPS1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CPS1-IT1 Gene

Disorders for CPS1-IT1 Gene

Additional Disease Information for CPS1-IT1

No disorders were found for CPS1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPS1-IT1 Gene

Publications for CPS1-IT1 Gene

  1. Long Noncoding RNA CPS1-IT1 Suppresses Cell Proliferation and Metastasis in Human Lung Cancer. (PMID: 27662619) Xiaoguang Z … Xiaofeng T (Oncology research 2017) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  3. Long noncoding RNA CPS1-IT1 suppresses the metastasis of hepatocellular carcinoma by regulating HIF-1α activity and inhibiting epithelial-mesenchymal transition. (PMID: 27248828) Wang TH … Hsueh C (Oncotarget 2016) 3 58
  4. LncRna CPS1-IT1 Suppresses Cell Proliferation, Invasion and Metastasis in Colorectal Cancer. (PMID: 29145177) Zhang W … Gu X (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2017) 3

Products for CPS1-IT1 Gene

Sources for CPS1-IT1 Gene

Content
Loading form....