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Aliases for CPS1-IT1 Gene

Subcategory (RNA class) for CPS1-IT1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CPS1-IT1 Gene

  • CPS1 Intronic Transcript 1 2 3 5
  • CPS1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • CPS1 Intronic Transcript (Non-Protein Coding) 3
  • CPS1-IT 3
  • CPS1IT1 3
  • PRO0132 3
  • CPS1IT 3

External Ids for CPS1-IT1 Gene

ORGUL Members for CPS1-IT1 Gene

Previous HGNC Symbols for CPS1-IT1 Gene

  • CPS1IT

Previous GeneCards Identifiers for CPS1-IT1 Gene

  • GC02P211485

Summaries for CPS1-IT1 Gene

Entrez Gene Summary for CPS1-IT1 Gene

  • This gene does not encode a protein, and it is located within an intron of the gene encoding carbamoyl-phosphate synthetase 1. [provided by RefSeq, Jul 2008]

GeneCards Summary for CPS1-IT1 Gene

CPS1-IT1 (CPS1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPS1-IT1 Gene

Genomics for CPS1-IT1 Gene

Regulatory Elements for CPS1-IT1 Gene

Enhancers for CPS1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G210620 0.5 ENCODE 0.7 +3.2 3181 0.2 BCL11A HLF TEAD4 CEBPB NR3C1 CPS1 CPS1-IT1 GC02P210656
GH02G210627 0.6 Ensembl 0.4 +9.5 9530 0.2 MTA2 EED NR2F1 IKZF1 JUNB DPF2 IKZF2 SPI1 CPS1-IT1 GC02P210656
GH02G210576 0.8 ENCODE 0.3 -39.7 -39697 2.3 CTCF TEAD4 CEBPG CHD7 RAD21 TEAD3 ZNF316 RERE ZNF143 SMC3 CPS1 GC02P210573 CPS1-IT1
GH02G210580 0.3 FANTOM5 0.3 -36.7 -36686 0.1 CPS1 GC02P210573 CPS1-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CPS1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CPS1-IT1 Gene

Chromosome:
2
Start:
210,617,571 bp from pter
End:
210,619,876 bp from pter
Size:
2,306 bases
Orientation:
Plus strand

Genomic View for CPS1-IT1 Gene

Genes around CPS1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPS1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPS1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPS1-IT1 Gene

Proteins for CPS1-IT1 Gene

Post-translational modifications for CPS1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CPS1-IT1 Gene

Domains & Families for CPS1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CPS1-IT1 Gene

Function for CPS1-IT1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPS1-IT1 Gene

Localization for CPS1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CPS1-IT1 Gene

Pathways & Interactions for CPS1-IT1 Gene

SuperPathways for CPS1-IT1 Gene

No Data Available

Interacting Proteins for CPS1-IT1 Gene

Gene Ontology (GO) - Biological Process for CPS1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CPS1-IT1 Gene

Drugs & Compounds for CPS1-IT1 Gene

No Compound Related Data Available

Transcripts for CPS1-IT1 Gene

mRNA/cDNA for CPS1-IT1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CPS1-IT1 Gene

CPS1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CPS1-IT1 Gene

No ASD Table

Relevant External Links for CPS1-IT1 Gene

GeneLoc Exon Structure for
CPS1-IT1
ECgene alternative splicing isoforms for
CPS1-IT1

Expression for CPS1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CPS1-IT1 Gene

SOURCE GeneReport for Unigene cluster for CPS1-IT1 Gene:

Hs.658398
genes like me logo Genes that share expression patterns with CPS1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CPS1-IT1 Gene

Orthologs for CPS1-IT1 Gene

Evolution for CPS1-IT1 Gene

ENSEMBL:
Gene Tree for CPS1-IT1 (if available)
TreeFam:
Gene Tree for CPS1-IT1 (if available)

No data available for Orthologs for CPS1-IT1 Gene

Paralogs for CPS1-IT1 Gene

No data available for Paralogs for CPS1-IT1 Gene

Variants for CPS1-IT1 Gene

Sequence variations from dbSNP and Humsavar for CPS1-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs2287599 other 210,616,533(-) TTGAG(A/C/G)CCTTT upstream-variant-2KB, reference, synonymous-codon
rs1000268110 -- 210,617,812(+) TCCCT(C/T)TCTTG intron-variant, nc-transcript-variant
rs1000367622 -- 210,619,350(+) TTTTT(A/G)TGAAG intron-variant, nc-transcript-variant
rs1000870239 -- 210,616,015(+) TCAAC(A/T)CTACA intron-variant, upstream-variant-2KB
rs1001608674 -- 210,618,806(+) CCAGG(A/G)AGGCT intron-variant, nc-transcript-variant

Relevant External Links for CPS1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPS1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CPS1-IT1 Gene

Disorders for CPS1-IT1 Gene

Relevant External Links for CPS1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CPS1-IT1

No disorders were found for CPS1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPS1-IT1 Gene

Publications for CPS1-IT1 Gene

  1. Long Noncoding RNA CPS1-IT1 Suppresses Cell Proliferation and Metastasis in Human Lung Cancer. (PMID: 27662619) Xiaoguang Z. … Xiaofeng T. (Oncol. Res. 2017) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for CPS1-IT1 Gene

Sources for CPS1-IT1 Gene

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